Strain Fitness in Sphingobium sp. HT1-2 around GFF2663

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,679,919	+		GFF2661	0.42	-0.3
2,679,919	+		GFF2661	0.42	+0.2
2,679,921	-		GFF2661	0.42	-1.8
2,679,932	-		GFF2661	0.45	-1.7
2,679,932	-		GFF2661	0.45	+0.3
2,679,932	-		GFF2661	0.45	+0.7
2,679,935	+		GFF2661	0.46	+1.4
2,679,937	-		GFF2661	0.47	+0.2
2,679,951	-		GFF2661	0.51	+1.1
2,679,980	-		GFF2661	0.60	-1.3
2,679,983	+		GFF2661	0.60	-0.5
2,679,983	+		GFF2661	0.60	-1.0
2,679,989	+		GFF2661	0.62	-0.7
2,679,991	-		GFF2661	0.63	-0.3
2,679,997	-		GFF2661	0.65	-1.1
2,679,998	+		GFF2661	0.65	-1.2
2,679,998	+		GFF2661	0.65	+0.4
2,680,003	+		GFF2661	0.66	+0.2
2,680,003	+		GFF2661	0.66	-1.7
2,680,006	-		GFF2661	0.67	-0.9
2,680,011	-		GFF2661	0.69	-0.8
2,680,011	-		GFF2661	0.69	+1.0
2,680,011	-		GFF2661	0.69	-1.1
2,680,011	-		GFF2661	0.69	-0.3
2,680,024	-		GFF2661	0.73	-0.9
2,680,028	-		GFF2661	0.74	-1.3
2,680,038	+		GFF2661	0.77	+0.5
2,680,038	+		GFF2661	0.77	-0.6
2,680,049	+		GFF2661	0.80	-1.7
2,680,058	-		GFF2661	0.83	+0.6
2,680,088	-				-2.0
2,680,101	-				-1.1
2,680,101	-				-0.8
2,680,112	+				-0.2
2,680,118	-				-0.5
2,680,120	+				-0.1
2,680,120	-				-0.3
2,680,123	-				+0.5
2,680,133	+				+0.1
2,680,133	-				-1.0
2,680,148	-				+0.4
2,680,171	+				-0.5
2,680,171	+				-1.5
2,680,188	+				+1.7
2,680,196	-				+0.2
2,680,223	-				-0.1
2,680,235	-				-1.5
2,680,245	-				-1.4
2,680,247	-				+0.7
2,680,256	-				-1.7
2,680,256	-				+0.6
2,680,256	-				+0.4
2,680,256	-				-1.1
2,680,256	-				-1.6
2,680,256	-				+0.4
2,680,256	-				-0.6
2,680,256	-				-0.3
2,680,256	-				+0.5
2,680,256	-				-0.3
2,680,256	-				-0.5
2,680,256	-				+0.8
2,680,256	-				-1.4
2,680,256	-				-1.9
2,680,256	-				-1.0
2,680,263	-				+0.5
2,680,268	+				-1.8
2,680,312	+				+0.6
2,680,312	+				+0.9
2,680,337	+				-1.1
2,680,343	-				+0.1
2,680,345	-				-1.1
2,680,345	-				+0.3
2,680,347	+				+0.2
2,680,348	-				+1.5
2,680,353	-				-0.8
2,680,380	-				-1.5
2,680,394	-				-1.1
2,680,399	+				-0.1
2,680,407	-				-0.3
2,680,407	-				-0.4
2,680,407	-				-0.8
2,680,413	+				-0.6
2,680,425	-				-0.3
2,680,432	+				-1.0
2,680,432	+				-1.1
2,680,452	+				-0.6
2,680,452	-				-2.2
2,680,460	+				+0.3
2,680,460	+				-1.6
2,680,468	-				-1.1
2,680,481	+				+0.9
2,680,481	+				-0.3
2,680,481	+				-0.9
2,680,491	+				-0.7
2,680,499	-				-0.8
2,680,544	+				-2.2
2,680,556	+				+0.5
2,680,561	+				-0.6
2,680,561	+				-1.5
2,680,561	+				+0.6
2,680,568	+				-1.2
2,680,568	+				+0.6
2,680,568	+				-1.6
2,680,568	+				+0.5
2,680,568	+				-0.1
2,680,568	+				-0.2
2,680,568	+				-0.7
2,680,568	+				-0.7
2,680,575	-		GFF2662	0.13	-0.2
2,680,576	-		GFF2662	0.14	+0.7
2,680,576	-		GFF2662	0.14	-1.6
2,680,576	-		GFF2662	0.14	-1.2
2,680,576	-		GFF2662	0.14	-1.1
2,680,576	-		GFF2662	0.14	+0.7
2,680,576	-		GFF2662	0.14	+0.1
2,680,576	-		GFF2662	0.14	-0.3
2,680,576	-		GFF2662	0.14	-0.0
2,680,578	+		GFF2662	0.16	+0.2
2,680,601	-		GFF2662	0.32	-0.5
2,680,603	+		GFF2662	0.33	-0.1
2,680,612	-		GFF2662	0.40	+0.8
2,680,625	+		GFF2662	0.49	-0.2
2,680,661	+		GFF2662	0.74	-0.6
2,680,661	+		GFF2662	0.74	-0.6
2,680,665	+		GFF2662	0.77	-0.9
2,680,671	+		GFF2662	0.82	-0.1
2,680,673	-		GFF2662	0.83	+0.6
2,680,673	-		GFF2662	0.83	-1.4
2,680,673	-		GFF2662	0.83	+1.3
2,680,675	+		GFF2662	0.84	-0.9
2,680,675	+		GFF2662	0.84	+0.4
2,680,675	+		GFF2662	0.84	-0.5
2,680,675	+		GFF2662	0.84	-0.1
2,680,675	+		GFF2662	0.84	-0.1
2,680,675	+		GFF2662	0.84	-0.9
2,680,675	+		GFF2662	0.84	+1.4
2,680,675	+		GFF2662	0.84	+0.2
2,680,675	+		GFF2662	0.84	-0.4
2,680,675	+		GFF2662	0.84	+0.8
2,680,675	+		GFF2662	0.84	+0.6
2,680,675	+		GFF2662	0.84	-0.3
2,680,675	+		GFF2662	0.84	-0.7
2,680,675	+		GFF2662	0.84	+0.0
2,680,677	+		GFF2662	0.86	+0.4
2,680,678	-		GFF2662	0.87	+0.1
2,680,678	-		GFF2662	0.87	-0.6
2,680,683	-				+0.3
2,680,683	-				+0.4
2,680,683	-				-1.3
2,680,683	-				-0.1
2,680,683	-				+1.7
2,680,683	-				-1.9
2,680,683	-				+0.2
2,680,683	-				-1.1
2,680,683	-				+0.7
2,680,683	-				-0.4
2,680,683	-				-0.3
2,680,683	-				-0.8
2,680,695	+				-0.7
2,680,695	+				-0.4
2,680,695	+				+1.6
2,680,698	+				-0.1
2,680,703	-				-0.7
2,680,722	+				-0.5
2,680,722	+				-0.9
2,680,724	-				-1.7
2,680,730	+				-0.3
2,680,730	+				-1.2
2,680,730	-				-1.5
2,680,738	-				-1.7
2,680,738	-				-0.5
2,680,738	-				-2.7
2,680,738	-				-1.3
2,680,741	+				+1.2
2,680,741	+				-2.1
2,680,741	+				-2.4
2,680,741	+				+1.1
2,680,749	-				-0.1
2,680,749	-				+0.2
2,680,749	-				-1.7
2,680,749	-				-0.2
2,680,749	-				+0.5
2,680,749	-				-1.0
2,680,754	+				-1.3
2,680,754	+				-0.7
2,680,761	+				+1.3
2,680,762	-				-1.1
2,680,762	-				-0.3
2,680,762	-				+0.4
2,680,762	-				-1.1
2,680,769	-				-0.3
2,680,769	-				+0.4
2,680,785	+				-0.3
2,680,793	-				-1.1
2,680,802	+				-0.1
2,680,815	-				-1.6
2,680,829	+				+1.1
2,680,831	+				-0.5
2,680,837	-				-0.5
2,680,839	-				-1.6
2,680,839	-				-1.8
2,680,850	+				-0.7
2,680,856	+				-0.4
2,680,882	-				-1.4
2,680,904	+				-1.4
2,680,904	+				-0.6
2,680,904	+				-1.6
2,680,904	+				-0.2
2,680,904	+				+0.8
2,680,904	+				-0.5
2,680,904	+				-0.7
2,680,904	+				-0.4
2,680,904	+				-1.4
2,680,904	+				+0.5
2,680,904	+				+0.7
2,680,904	+				-0.5
2,680,904	+				-0.3
2,680,904	+				-0.8
2,680,904	+				-0.5
2,680,904	+				-2.0
2,680,912	-				+0.8
2,680,912	-				-0.1
2,680,912	-				+1.6
2,680,912	-				+0.3
2,680,912	-				-1.6
2,680,912	-				+0.3
2,680,912	-				-0.4
2,680,912	-				+0.5
2,680,912	-				-1.5
2,680,917	+				+0.7
2,680,917	+				-0.5
2,680,925	-				+1.4
2,680,925	-				-1.3
2,680,930	-				-1.1
2,680,930	-				-1.4
2,680,947	+				+0.4
2,680,947	+				+1.2
2,680,951	+				-0.7
2,680,955	-				-0.8
2,680,955	-				-0.8
2,680,955	-				+0.3
2,680,955	-				-1.2
2,680,955	-				+0.8
2,680,955	-				-0.5
2,680,960	-				+0.9
2,680,964	-				+0.4
2,680,966	+				-0.1
2,680,966	+				-0.6
2,680,966	+				+0.3
2,680,974	-				-0.5
2,680,974	-				+0.7
2,680,974	-				-1.1
2,680,984	-		GFF2663	0.11	-0.5
2,681,001	+		GFF2663	0.14	-0.7
2,681,013	-		GFF2663	0.16	-0.1
2,681,066	+		GFF2663	0.25	-1.6
2,681,066	+		GFF2663	0.25	+0.3
2,681,074	-		GFF2663	0.26	+0.7
2,681,074	-		GFF2663	0.26	-1.9
2,681,074	-		GFF2663	0.26	-1.1
2,681,080	+		GFF2663	0.27	-0.8
2,681,082	-		GFF2663	0.27	-0.3
2,681,083	-		GFF2663	0.27	-2.2
2,681,093	+		GFF2663	0.29	+0.4
2,681,093	+		GFF2663	0.29	-1.0
2,681,098	+		GFF2663	0.30	-0.2
2,681,121	+		GFF2663	0.34	-0.8
2,681,121	+		GFF2663	0.34	-2.5
2,681,121	+		GFF2663	0.34	-0.7
2,681,121	+		GFF2663	0.34	-0.0
2,681,129	-		GFF2663	0.35	-0.3
2,681,129	-		GFF2663	0.35	-0.3
2,681,129	-		GFF2663	0.35	-0.2
2,681,129	-		GFF2663	0.35	-0.3
2,681,130	+		GFF2663	0.35	-0.8
2,681,145	+		GFF2663	0.38	+0.7
2,681,148	+		GFF2663	0.38	+1.4
2,681,153	+		GFF2663	0.39	-0.7
2,681,158	-		GFF2663	0.40	-0.5
2,681,172	+		GFF2663	0.42	+0.4
2,681,174	+		GFF2663	0.43	-1.1
2,681,174	+		GFF2663	0.43	-0.7
2,681,177	-		GFF2663	0.43	+0.1
2,681,200	+		GFF2663	0.47	-0.7
2,681,208	-		GFF2663	0.48	-0.2
2,681,208	-		GFF2663	0.48	-0.6
2,681,211	-		GFF2663	0.49	-0.6
2,681,229	+		GFF2663	0.52	-0.6
2,681,229	+		GFF2663	0.52	+0.1
2,681,241	+		GFF2663	0.54	-0.6
2,681,241	+		GFF2663	0.54	+0.2
2,681,249	-		GFF2663	0.55	+0.0
2,681,249	-		GFF2663	0.55	+0.5
2,681,249	-		GFF2663	0.55	+0.5
2,681,249	-		GFF2663	0.55	+1.3
2,681,249	-		GFF2663	0.55	-0.5
2,681,258	+		GFF2663	0.57	-0.1
2,681,263	+		GFF2663	0.58	-1.7
2,681,275	+		GFF2663	0.60	+0.2
2,681,283	-		GFF2663	0.61	+1.7
2,681,296	+		GFF2663	0.63	-1.9
2,681,296	+		GFF2663	0.63	+0.1
2,681,304	-		GFF2663	0.64	-1.5
2,681,304	-		GFF2663	0.64	-0.6
2,681,304	-		GFF2663	0.64	-1.5
2,681,325	-		GFF2663	0.68	-0.3
2,681,337	+		GFF2663	0.70	-1.0
2,681,337	+		GFF2663	0.70	-0.2
2,681,349	-		GFF2663	0.72	-0.5
2,681,395	+		GFF2663	0.80	-1.3
2,681,395	+		GFF2663	0.80	-0.3
2,681,395	+		GFF2663	0.80	-2.2
2,681,403	-		GFF2663	0.81	+0.4
2,681,414	-		GFF2663	0.83	-0.1
2,681,414	-		GFF2663	0.83	+1.0
2,681,423	-		GFF2663	0.84	-0.5
2,681,425	-		GFF2663	0.85	+0.2
2,681,426	+		GFF2663	0.85	-0.3
2,681,426	+		GFF2663	0.85	+1.4
2,681,426	+		GFF2663	0.85	-1.4
2,681,426	+		GFF2663	0.85	+0.4
2,681,434	-		GFF2663	0.86	+0.5
2,681,434	-		GFF2663	0.86	-0.2
2,681,434	-		GFF2663	0.86	-1.8
2,681,434	-		GFF2663	0.86	+0.5
2,681,434	-		GFF2663	0.86	+0.5
2,681,434	-		GFF2663	0.86	-0.9
2,681,434	-		GFF2663	0.86	-1.2
2,681,455	+		GFF2663	0.90	+0.1
2,681,460	+				+0.3
2,681,461	+				-0.2
2,681,463	-				-1.4
2,681,463	-				-1.1
2,681,463	-				-1.6
2,681,463	-				+0.2
2,681,463	-				-1.4
2,681,468	-				-0.5
2,681,508	-				-0.1
2,681,520	-				-1.3
2,681,531	-				+0.9
2,681,531	-				+1.1
2,681,531	-				+0.1
2,681,589	+				+1.1
2,681,597	-				-1.8
2,681,613	+				+0.2
2,681,629	+				-0.5
2,681,634	+				-2.2
2,681,641	+				-0.9
2,681,643	+				-1.9
2,681,643	+				-0.5
2,681,643	+				-2.2
2,681,643	+				-0.1
2,681,649	+				-1.1
2,681,649	+				+0.6
2,681,651	-				-0.0
2,681,651	-				+0.0
2,681,662	+				-0.4
2,681,674	+				+0.7