Strain Fitness in Sphingobium sp. HT1-2 around GFF2648

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,666,692	-		GFF2646	0.86	-0.9
2,666,697	-		GFF2646	0.86	-0.4
2,666,712	-		GFF2646	0.88	-0.5
2,666,712	-		GFF2646	0.88	+0.5
2,666,718	+		GFF2646	0.88	+1.1
2,666,736	+				-0.7
2,666,744	-				+1.0
2,666,755	+				+1.3
2,666,758	-				+0.1
2,666,759	+				-1.0
2,666,759	+				+0.6
2,666,759	+				-1.7
2,666,759	+				-0.2
2,666,763	-				-1.8
2,666,767	-				-0.3
2,666,767	-				+0.9
2,666,767	-				-1.3
2,666,769	+				-1.5
2,666,782	-				-0.5
2,666,791	+				-1.3
2,666,801	+				+0.1
2,666,801	+				+1.2
2,666,801	+				-1.5
2,666,808	+				+1.0
2,666,808	+				+1.3
2,666,808	+				+0.6
2,666,808	+				-0.4
2,666,808	+				-0.6
2,666,809	-				-0.1
2,666,816	-				+0.4
2,666,816	-				+1.0
2,666,816	-				+0.7
2,666,816	-				-0.8
2,666,816	-				+0.0
2,666,831	+				-0.4
2,666,831	+				-1.7
2,666,831	+				-0.4
2,666,851	+				-0.3
2,666,854	+				-0.8
2,666,860	-				+0.1
2,666,860	-				+0.5
2,666,860	-				-0.4
2,666,882	-				-0.8
2,666,923	+		GFF2647	0.11	-1.4
2,666,936	+		GFF2647	0.12	-0.3
2,666,945	+		GFF2647	0.13	-0.3
2,666,945	+		GFF2647	0.13	+0.5
2,666,953	-		GFF2647	0.14	-1.6
2,666,953	-		GFF2647	0.14	-0.9
2,666,953	-		GFF2647	0.14	-0.7
2,666,960	+		GFF2647	0.15	+1.0
2,666,975	+		GFF2647	0.17	-0.7
2,666,980	+		GFF2647	0.17	+0.3
2,666,980	+		GFF2647	0.17	-1.2
2,666,988	-		GFF2647	0.18	+0.6
2,666,989	+		GFF2647	0.18	-0.6
2,666,995	+		GFF2647	0.19	-1.6
2,666,997	+		GFF2647	0.19	+0.7
2,667,000	+		GFF2647	0.20	+0.1
2,667,003	-		GFF2647	0.20	-0.7
2,667,008	-		GFF2647	0.21	+0.8
2,667,087	-		GFF2647	0.30	-0.2
2,667,119	+		GFF2647	0.33	-0.1
2,667,126	-		GFF2647	0.34	-1.9
2,667,133	-		GFF2647	0.35	-1.3
2,667,137	+		GFF2647	0.36	+0.2
2,667,145	-		GFF2647	0.36	+1.7
2,667,149	+		GFF2647	0.37	+0.8
2,667,172	-		GFF2647	0.40	+0.6
2,667,172	-		GFF2647	0.40	-2.2
2,667,194	+		GFF2647	0.42	-0.4
2,667,199	+		GFF2647	0.43	+0.1
2,667,226	+		GFF2647	0.46	+0.3
2,667,231	+		GFF2647	0.46	-0.4
2,667,234	-		GFF2647	0.47	-0.1
2,667,234	-		GFF2647	0.47	+1.3
2,667,234	-		GFF2647	0.47	-0.5
2,667,234	-		GFF2647	0.47	-0.5
2,667,234	-		GFF2647	0.47	+1.3
2,667,239	+		GFF2647	0.47	-2.4
2,667,248	+		GFF2647	0.48	-1.4
2,667,256	-		GFF2647	0.49	-0.9
2,667,258	+		GFF2647	0.50	+1.0
2,667,266	-		GFF2647	0.50	-1.6
2,667,266	-		GFF2647	0.50	+0.6
2,667,276	+		GFF2647	0.52	-0.6
2,667,287	-		GFF2647	0.53	+0.6
2,667,351	+		GFF2647	0.60	+0.1
2,667,366	+		GFF2647	0.62	-0.5
2,667,385	+		GFF2647	0.64	-0.6
2,667,393	-		GFF2647	0.65	-0.9
2,667,401	+		GFF2647	0.66	-0.0
2,667,414	-		GFF2647	0.68	-0.7
2,667,423	+		GFF2647	0.69	+0.9
2,667,431	-		GFF2647	0.70	-0.2
2,667,452	+		GFF2647	0.72	-0.7
2,667,460	-		GFF2647	0.73	+0.1
2,667,464	-		GFF2647	0.73	-1.9
2,667,466	+		GFF2647	0.74	+0.2
2,667,474	-		GFF2647	0.75	+0.6
2,667,486	+		GFF2647	0.76	-1.0
2,667,486	+		GFF2647	0.76	+0.3
2,667,486	+		GFF2647	0.76	+2.3
2,667,486	+		GFF2647	0.76	-0.0
2,667,489	-		GFF2647	0.76	-0.8
2,667,489	-		GFF2647	0.76	-0.8
2,667,489	-		GFF2647	0.76	+1.3
2,667,494	-		GFF2647	0.77	+0.6
2,667,494	-		GFF2647	0.77	-1.3
2,667,516	+		GFF2647	0.79	-1.3
2,667,524	-		GFF2647	0.80	-0.7
2,667,524	-		GFF2647	0.80	+0.8
2,667,524	-		GFF2647	0.80	-1.4
2,667,524	-		GFF2647	0.80	-1.3
2,667,524	-		GFF2647	0.80	-0.4
2,667,524	-		GFF2647	0.80	-0.8
2,667,526	+		GFF2647	0.81	-0.4
2,667,526	+		GFF2647	0.81	-0.8
2,667,526	+		GFF2647	0.81	-1.1
2,667,531	+		GFF2647	0.81	-0.2
2,667,534	-		GFF2647	0.81	+0.1
2,667,534	-		GFF2647	0.81	-1.0
2,667,534	-		GFF2647	0.81	+0.8
2,667,534	-		GFF2647	0.81	+0.5
2,667,534	-		GFF2647	0.81	-0.3
2,667,534	-		GFF2647	0.81	+0.2
2,667,534	-		GFF2647	0.81	+0.3
2,667,536	+		GFF2647	0.82	+0.0
2,667,539	-		GFF2647	0.82	+0.3
2,667,539	-		GFF2647	0.82	+0.2
2,667,539	-		GFF2647	0.82	-1.4
2,667,539	-		GFF2647	0.82	-0.3
2,667,539	-		GFF2647	0.82	+0.2
2,667,539	-		GFF2647	0.82	+0.8
2,667,544	-		GFF2647	0.83	+0.6
2,667,544	-		GFF2647	0.83	-2.3
2,667,544	-		GFF2647	0.83	-0.4
2,667,549	-		GFF2647	0.83	-1.0
2,667,607	-				+0.2
2,667,608	+				+0.9
2,667,608	+				-0.6
2,667,616	-				+0.5
2,667,618	-				+0.1
2,667,628	-				-0.1
2,667,636	+				-0.8
2,667,637	+				-0.3
2,667,637	+				-0.1
2,667,670	+				+0.6
2,667,675	+				+0.7
2,667,675	+				-0.6
2,667,675	+				+0.5
2,667,675	+				-1.0
2,667,675	+				-1.3
2,667,675	+				-1.1
2,667,675	+				-1.1
2,667,675	+				+0.5
2,667,675	+				+1.1
2,667,681	+				-1.6
2,667,682	+				-1.4
2,667,682	+				+0.4
2,667,683	-				+0.6
2,667,683	-				-1.1
2,667,683	-				-0.3
2,667,683	-				+0.6
2,667,683	-				+1.1
2,667,683	-				+0.2
2,667,683	-				-1.4
2,667,683	-				+0.5
2,667,683	-				+0.3
2,667,683	-				+0.5
2,667,683	-				-1.0
2,667,683	-				+0.1
2,667,683	-				+0.0
2,667,683	-				-1.1
2,667,685	+				-2.1
2,667,687	+				-0.4
2,667,688	-				-0.0
2,667,705	-				-1.2
2,667,706	+				-1.0
2,667,706	+				+0.4
2,667,706	+				-0.1
2,667,714	-				+0.0
2,667,716	+				-3.1
2,667,724	-		GFF2648	0.12	-0.9
2,667,765	+		GFF2648	0.26	+0.9
2,667,772	+		GFF2648	0.29	-0.8
2,667,772	+		GFF2648	0.29	-2.2
2,667,772	+		GFF2648	0.29	-0.1
2,667,777	+		GFF2648	0.31	-2.7
2,667,777	+		GFF2648	0.31	-0.8
2,667,780	-		GFF2648	0.32	-0.2
2,667,780	-		GFF2648	0.32	+0.6
2,667,780	-		GFF2648	0.32	-1.5
2,667,780	-		GFF2648	0.32	-1.1
2,667,785	-		GFF2648	0.33	-0.7
2,667,790	-		GFF2648	0.35	-1.4
2,667,795	+		GFF2648	0.37	+0.6
2,667,813	+		GFF2648	0.43	-0.7
2,667,846	+		GFF2648	0.55	+0.6
2,667,854	-		GFF2648	0.58	+0.3
2,667,854	-		GFF2648	0.58	-1.5
2,667,854	-		GFF2648	0.58	-0.6
2,667,856	+		GFF2648	0.58	+0.1
2,667,856	+		GFF2648	0.58	-0.7
2,667,856	+		GFF2648	0.58	-1.1
2,667,866	+		GFF2648	0.62	+0.5
2,667,866	+		GFF2648	0.62	-1.2
2,667,873	+		GFF2648	0.64	+0.8
2,667,873	+		GFF2648	0.64	+0.5
2,667,873	+		GFF2648	0.64	-1.8
2,667,873	+		GFF2648	0.64	+0.0
2,667,873	+		GFF2648	0.64	+0.4
2,667,873	+		GFF2648	0.64	+0.6
2,667,873	+		GFF2648	0.64	+0.2
2,667,873	+		GFF2648	0.64	+0.6
2,667,873	+		GFF2648	0.64	-1.7
2,667,874	-		GFF2648	0.65	-0.1
2,667,874	-		GFF2648	0.65	-0.9
2,667,874	-		GFF2648	0.65	-2.2
2,667,881	-		GFF2648	0.67	+0.1
2,667,881	-		GFF2648	0.67	+0.2
2,667,881	-		GFF2648	0.67	-0.8
2,667,881	-		GFF2648	0.67	+0.5
2,667,881	-		GFF2648	0.67	+0.7
2,667,886	-		GFF2648	0.69	-0.5
2,667,887	+		GFF2648	0.69	-0.6
2,667,887	+		GFF2648	0.69	+0.9
2,667,887	+		GFF2648	0.69	-0.5
2,667,887	+		GFF2648	0.69	-0.1
2,667,892	+		GFF2648	0.71	+0.6
2,667,895	-		GFF2648	0.72	-1.5
2,667,902	+		GFF2648	0.74	-1.4
2,667,905	-		GFF2648	0.75	-0.1
2,667,915	-		GFF2648	0.79	-0.8
2,667,915	-		GFF2648	0.79	+0.6
2,667,928	-		GFF2648	0.84	-1.0
2,667,935	+		GFF2648	0.86	-0.2
2,667,935	+		GFF2648	0.86	-1.4
2,667,944	+		GFF2648	0.89	-1.3
2,667,947	-				+0.8
2,667,967	-				+0.2
2,667,967	-				-0.9
2,667,986	+				-1.0
2,667,988	+				+0.1
2,668,006	-				+0.0
2,668,012	+				-0.3
2,668,019	+				+0.4
2,668,032	-				+0.6
2,668,044	+				-0.3
2,668,044	+				-0.7
2,668,050	+				+1.3
2,668,052	-				+0.9
2,668,058	+				-0.5
2,668,058	+				-0.6
2,668,058	+				+0.4
2,668,058	+				+1.4
2,668,058	+				+0.8
2,668,058	+				-1.7
2,668,058	+				-1.4
2,668,058	+				-1.6
2,668,058	-				-1.6
2,668,061	-				-1.4
2,668,066	-				+0.6
2,668,066	-				-0.2
2,668,066	-				-0.5
2,668,066	-				-0.2
2,668,066	-				-0.1
2,668,066	-				-0.2
2,668,071	-				-0.6
2,668,078	-				+1.0
2,668,090	+				-0.7
2,668,090	+				-0.4
2,668,098	-				-1.2
2,668,098	-				-0.0
2,668,105	+				+0.6
2,668,107	+				+0.4
2,668,107	+				-1.1
2,668,114	-				+0.6
2,668,121	-				-0.3
2,668,121	-				-1.2
2,668,128	+				-0.8
2,668,128	+				-1.4
2,668,128	+				-0.7
2,668,128	+				-1.1
2,668,133	+				-1.6
2,668,136	-				+0.4
2,668,136	-				+0.2
2,668,141	-				-0.6
2,668,177	+		GFF2649	0.12	-1.1
2,668,180	-		GFF2649	0.12	-0.3
2,668,182	+		GFF2649	0.12	-0.7
2,668,182	+		GFF2649	0.12	-0.6
2,668,182	+		GFF2649	0.12	-2.0
2,668,185	-		GFF2649	0.12	-0.9
2,668,187	+		GFF2649	0.12	-2.6
2,668,190	-		GFF2649	0.13	+0.6
2,668,190	-		GFF2649	0.13	+1.0
2,668,190	-		GFF2649	0.13	-0.9
2,668,190	-		GFF2649	0.13	-0.3
2,668,190	-		GFF2649	0.13	+0.5
2,668,206	+		GFF2649	0.14	+0.0
2,668,222	-		GFF2649	0.15	+0.5
2,668,227	+		GFF2649	0.16	+0.6
2,668,245	-		GFF2649	0.17	-0.2
2,668,270	-		GFF2649	0.19	+0.9
2,668,307	+		GFF2649	0.23	+0.5
2,668,307	+		GFF2649	0.23	+0.1
2,668,309	+		GFF2649	0.23	+1.3
2,668,309	+		GFF2649	0.23	-0.3
2,668,312	+		GFF2649	0.23	-0.4
2,668,314	+		GFF2649	0.23	-1.2
2,668,317	-		GFF2649	0.23	+0.1
2,668,322	-		GFF2649	0.24	+0.6
2,668,333	+		GFF2649	0.25	+0.1
2,668,343	+		GFF2649	0.26	-1.6
2,668,343	+		GFF2649	0.26	+0.9
2,668,343	+		GFF2649	0.26	+0.3
2,668,343	+		GFF2649	0.26	-0.2
2,668,346	-		GFF2649	0.26	-0.8
2,668,346	-		GFF2649	0.26	-0.4
2,668,346	-		GFF2649	0.26	+0.4
2,668,351	-		GFF2649	0.26	-0.4
2,668,367	-		GFF2649	0.28	+1.2
2,668,368	+		GFF2649	0.28	+0.6
2,668,368	+		GFF2649	0.28	+0.6
2,668,376	-		GFF2649	0.28	-1.3
2,668,376	-		GFF2649	0.28	-0.4
2,668,396	+		GFF2649	0.30	-0.7
2,668,397	-		GFF2649	0.30	+0.6
2,668,404	+		GFF2649	0.31	+0.5
2,668,429	+		GFF2649	0.33	-1.6
2,668,439	+		GFF2649	0.34	-1.2
2,668,447	-		GFF2649	0.34	+0.1
2,668,449	+		GFF2649	0.35	-0.6
2,668,457	-		GFF2649	0.35	-1.0
2,668,494	+		GFF2649	0.38	-0.5
2,668,504	-		GFF2649	0.39	-0.3
2,668,511	+		GFF2649	0.40	-1.2
2,668,511	+		GFF2649	0.40	-0.3
2,668,558	-		GFF2649	0.44	+0.1
2,668,574	-		GFF2649	0.45	+1.1
2,668,621	-		GFF2649	0.49	-0.7
2,668,639	+		GFF2649	0.51	-1.4
2,668,639	+		GFF2649	0.51	-0.7
2,668,639	+		GFF2649	0.51	-0.2
2,668,644	+		GFF2649	0.51	-0.9
2,668,647	-		GFF2649	0.51	+0.4
2,668,647	-		GFF2649	0.51	-1.0
2,668,647	-		GFF2649	0.51	-0.5
2,668,647	-		GFF2649	0.51	-0.5
2,668,647	-		GFF2649	0.51	+0.7
2,668,652	-		GFF2649	0.52	-0.2
2,668,652	-		GFF2649	0.52	+0.3
2,668,656	-		GFF2649	0.52	-0.9
2,668,658	+		GFF2649	0.52	-0.2
2,668,669	-		GFF2649	0.53	+0.7
2,668,691	+		GFF2649	0.55	+0.3
2,668,699	-		GFF2649	0.56	-1.4
2,668,712	-		GFF2649	0.57	+0.3
2,668,714	+		GFF2649	0.57	+0.2
2,668,737	+		GFF2649	0.59	-0.9
2,668,738	+		GFF2649	0.59	+0.2
2,668,761	+		GFF2649	0.61	+0.1
2,668,762	+		GFF2649	0.61	-0.5
2,668,770	-		GFF2649	0.62	-1.3
2,668,770	-		GFF2649	0.62	+0.7
2,668,785	+		GFF2649	0.63	-0.4
2,668,812	-		GFF2649	0.65	-0.9
2,668,814	-		GFF2649	0.66	-1.0
2,668,818	+		GFF2649	0.66	-0.7
2,668,821	-		GFF2649	0.66	+1.3
2,668,826	-		GFF2649	0.67	-0.8
2,668,826	-		GFF2649	0.67	+0.8
2,668,841	+		GFF2649	0.68	+0.1
2,668,865	+		GFF2649	0.70	-0.2
2,668,866	+		GFF2649	0.70	+0.3
2,668,866	+		GFF2649	0.70	-0.4
2,668,866	+		GFF2649	0.70	+0.3
2,668,866	+		GFF2649	0.70	+0.3
2,668,866	+		GFF2649	0.70	-0.1
2,668,866	+		GFF2649	0.70	-1.2
2,668,866	+		GFF2649	0.70	-1.4
2,668,874	-		GFF2649	0.71	+1.1
2,668,874	-		GFF2649	0.71	-0.8
2,668,874	-		GFF2649	0.71	-0.1
2,668,874	-		GFF2649	0.71	-1.1
2,668,874	-		GFF2649	0.71	-0.8
2,668,874	-		GFF2649	0.71	-0.3
2,668,874	-		GFF2649	0.71	-0.7
2,668,874	-		GFF2649	0.71	-1.0
2,668,900	+		GFF2649	0.73	-0.3
2,668,931	+		GFF2649	0.75	-0.6
2,668,939	-		GFF2649	0.76	-0.6
2,668,952	-		GFF2649	0.77	-0.2
2,668,952	-		GFF2649	0.77	-2.1