Strain Fitness in Sphingobium sp. HT1-2 around GFF2633

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,650,090	+				+1.1
2,650,092	-				+0.4
2,650,111	+				+0.9
2,650,130	-				-1.1
2,650,132	+				-0.9
2,650,132	-				-2.0
2,650,136	-				-0.6
2,650,139	+				-1.8
2,650,139	+				-0.1
2,650,139	+				-0.7
2,650,139	+				+0.8
2,650,183	+				+0.1
2,650,203	-				+0.4
2,650,222	-				-1.2
2,650,234	+				-2.1
2,650,241	-				+0.6
2,650,241	-				-0.9
2,650,243	+				+0.2
2,650,243	+				+0.4
2,650,251	-				+0.2
2,650,261	-				-0.2
2,650,267	+				+0.8
2,650,275	-				-0.5
2,650,277	+				-1.4
2,650,277	+				-1.6
2,650,290	+				-0.8
2,650,290	+				+2.0
2,650,290	+				+1.4
2,650,292	+				-2.4
2,650,313	+				+0.0
2,650,313	+				+0.4
2,650,321	-				+0.8
2,650,321	-				+0.5
2,650,321	-				+0.9
2,650,321	-				+0.5
2,650,329	+				-1.4
2,650,337	-				-1.9
2,650,337	-				-0.4
2,650,361	-				-1.5
2,650,363	+				-1.0
2,650,363	+				-1.1
2,650,363	+				+1.8
2,650,363	+				+0.3
2,650,363	+				-0.4
2,650,363	+				+1.1
2,650,363	+				-1.0
2,650,363	+				-0.1
2,650,371	-				+0.2
2,650,371	-				+0.5
2,650,371	-				+0.3
2,650,371	-				-0.7
2,650,373	+				-0.1
2,650,374	+				-0.8
2,650,374	+				-0.7
2,650,374	+				-0.1
2,650,391	+				+1.0
2,650,392	-				-0.1
2,650,396	+				-0.5
2,650,404	-				+0.2
2,650,412	-				-0.7
2,650,427	+				-1.7
2,650,470	-				-0.3
2,650,480	-				+0.8
2,650,508	+				-0.5
2,650,508	+				-0.5
2,650,526	+				-0.8
2,650,526	+				-2.4
2,650,526	+				+1.1
2,650,526	+				-1.4
2,650,526	+				-0.0
2,650,526	+				-0.7
2,650,526	+				+0.5
2,650,526	+				-1.2
2,650,526	+				-0.5
2,650,526	+				-0.9
2,650,526	+				-0.9
2,650,526	+				-0.8
2,650,526	+				-0.6
2,650,526	+				-0.7
2,650,526	+				-0.2
2,650,526	+				-0.4
2,650,526	+				-1.8
2,650,526	+				-1.8
2,650,532	-				-1.0
2,650,532	-				-0.1
2,650,534	-				-1.6
2,650,534	-				-1.2
2,650,534	-				-0.5
2,650,534	-				-1.1
2,650,534	-				+1.7
2,650,534	-				-0.0
2,650,534	-				-0.8
2,650,534	-				-0.6
2,650,534	-				-0.9
2,650,534	-				-0.9
2,650,534	-				+0.1
2,650,536	+				+0.3
2,650,537	+				-1.9
2,650,543	-		GFF2632	0.11	-1.6
2,650,544	-		GFF2632	0.11	-0.1
2,650,545	-		GFF2632	0.12	-1.9
2,650,545	-		GFF2632	0.12	-0.4
2,650,545	-		GFF2632	0.12	-1.0
2,650,545	-		GFF2632	0.12	-0.2
2,650,546	+		GFF2632	0.13	-1.2
2,650,560	-		GFF2632	0.21	-0.9
2,650,566	+		GFF2632	0.24	+0.5
2,650,574	-		GFF2632	0.29	+0.2
2,650,579	-		GFF2632	0.32	-0.1
2,650,579	-		GFF2632	0.32	-0.6
2,650,594	+		GFF2632	0.40	+1.0
2,650,600	-		GFF2632	0.44	+0.9
2,650,604	+		GFF2632	0.46	-1.4
2,650,612	-		GFF2632	0.51	-1.2
2,650,619	+		GFF2632	0.55	+0.4
2,650,627	-		GFF2632	0.59	-0.4
2,650,627	-		GFF2632	0.59	+0.8
2,650,627	-		GFF2632	0.59	-0.0
2,650,630	+		GFF2632	0.61	+1.1
2,650,632	-		GFF2632	0.62	-1.0
2,650,637	+		GFF2632	0.65	+0.4
2,650,637	-		GFF2632	0.65	+0.4
2,650,654	+		GFF2632	0.75	-1.5
2,650,659	+		GFF2632	0.78	-0.4
2,650,659	+		GFF2632	0.78	+0.6
2,650,659	+		GFF2632	0.78	-1.2
2,650,659	+		GFF2632	0.78	-0.6
2,650,664	+		GFF2632	0.80	-0.8
2,650,667	-		GFF2632	0.82	+0.5
2,650,667	-		GFF2632	0.82	+0.8
2,650,672	-		GFF2632	0.85	+0.9
2,650,684	+				-0.8
2,650,692	+				-1.6
2,650,692	+				+0.1
2,650,692	-				-0.9
2,650,700	-				+1.0
2,650,700	-				-2.3
2,650,700	-				-0.1
2,650,700	-				+0.3
2,650,767	+				-3.7
2,650,777	+				-2.1
2,650,777	+				-0.8
2,650,777	+				+0.5
2,650,778	-				-0.4
2,650,785	-				+0.3
2,650,785	-				-1.6
2,650,785	-				-0.6
2,650,785	-				-0.1
2,650,785	-				-0.8
2,650,785	-				+0.1
2,650,785	-				-1.1
2,650,785	-				-1.1
2,650,785	-				+1.3
2,650,793	+				+0.2
2,650,795	+				-1.8
2,650,795	+				-1.2
2,650,803	-				-0.9
2,650,803	-				-1.1
2,650,803	-				-0.2
2,650,813	-				+0.4
2,650,813	-				+0.4
2,650,839	-				-0.1
2,650,840	-				-1.4
2,650,847	+				-0.6
2,650,847	+				-0.4
2,650,847	+				-0.7
2,650,855	-				-0.1
2,650,855	-				+1.6
2,650,855	-				-0.6
2,650,858	+				-1.6
2,650,858	+				-0.7
2,650,866	-				-0.1
2,650,866	-				-0.2
2,650,881	+				+0.6
2,650,881	+				+0.0
2,650,881	+				+0.2
2,650,881	+				-1.0
2,650,881	+				-0.4
2,650,881	+				-2.3
2,650,881	+				+0.6
2,650,881	+				+1.2
2,650,881	+				-0.3
2,650,889	-				-1.3
2,650,889	-				+0.5
2,650,889	-				-1.6
2,650,889	-				-1.6
2,650,889	-				-1.3
2,650,899	-				-2.1
2,650,899	-				-0.7
2,650,899	-				-0.3
2,650,905	+				-1.5
2,650,964	+				-0.7
2,650,985	+				+1.0
2,650,985	+				-0.5
2,650,993	-				+0.7
2,650,997	+				+0.6
2,651,005	+				+0.0
2,651,005	-				-0.7
2,651,021	+				+0.8
2,651,021	+				-0.5
2,651,026	+				-1.1
2,651,026	+				+0.3
2,651,029	-				+0.6
2,651,032	-				-0.3
2,651,034	-				+0.2
2,651,034	-				-1.2
2,651,034	-				+0.2
2,651,034	-				-1.5
2,651,034	-				+1.1
2,651,039	-				-0.4
2,651,047	+				-2.4
2,651,047	+				-0.9
2,651,055	-				-1.1
2,651,055	-				+0.4
2,651,055	-				+0.9
2,651,055	-				-1.4
2,651,060	+				-1.1
2,651,064	+				-0.1
2,651,064	+				-1.3
2,651,068	-				-0.8
2,651,072	-				+0.4
2,651,072	-				-0.1
2,651,073	-				+0.8
2,651,078	-				-0.9
2,651,078	-				-1.6
2,651,098	+		GFF2633	0.12	-1.7
2,651,157	+		GFF2633	0.33	+0.5
2,651,157	+		GFF2633	0.33	-0.4
2,651,157	+		GFF2633	0.33	+0.3
2,651,157	+		GFF2633	0.33	-0.4
2,651,165	-		GFF2633	0.36	-0.3
2,651,165	-		GFF2633	0.36	-0.7
2,651,175	+		GFF2633	0.39	-0.8
2,651,190	+		GFF2633	0.44	-0.7
2,651,190	+		GFF2633	0.44	-2.0
2,651,198	-		GFF2633	0.47	-1.5
2,651,198	-		GFF2633	0.47	-2.1
2,651,198	-		GFF2633	0.47	-0.5
2,651,201	-		GFF2633	0.48	-1.5
2,651,210	-		GFF2633	0.51	-0.7
2,651,243	-		GFF2633	0.63	+0.7
2,651,256	-		GFF2633	0.67	+0.3
2,651,256	-		GFF2633	0.67	-0.6
2,651,257	-		GFF2633	0.68	-0.7
2,651,259	+		GFF2633	0.68	+1.1
2,651,272	-		GFF2633	0.73	+0.7
2,651,296	-		GFF2633	0.81	-0.7
2,651,340	-				+0.0
2,651,371	+				-0.5
2,651,371	+				+0.3
2,651,399	+				-0.4
2,651,404	+				-0.7
2,651,409	+				-1.2
2,651,412	-				+0.1
2,651,416	+				-0.7
2,651,417	-				-1.4
2,651,427	+				-0.6
2,651,435	-				+0.5
2,651,441	-				-1.0
2,651,451	+				+0.2
2,651,485	+				-0.5
2,651,501	+				+0.5
2,651,501	+				-0.2
2,651,502	-				+1.3
2,651,518	+				-1.0
2,651,527	+				-1.1
2,651,539	-				-1.1
2,651,577	-				+1.3
2,651,598	+				-0.6
2,651,607	-				-0.6
2,651,619	+				-1.3
2,651,619	+				-0.3
2,651,619	+				-0.1
2,651,619	+				+1.6
2,651,619	+				-1.1
2,651,627	-				-0.3
2,651,627	-				-0.6
2,651,627	-				-0.6
2,651,628	-				-1.8
2,651,628	-				-0.8
2,651,660	+				-0.7
2,651,661	+				-0.5
2,651,661	+				+0.4
2,651,661	+				-0.6
2,651,661	+				+1.0
2,651,661	+				-0.8
2,651,661	+				-1.6
2,651,661	+				-1.2
2,651,661	+				-1.1
2,651,661	+				-0.4
2,651,661	+				+0.0
2,651,661	+				-1.3
2,651,669	-				+0.2
2,651,669	-				+0.9
2,651,669	-				+0.1
2,651,669	-				-0.1
2,651,704	-				-1.2
2,651,721	+				-1.5
2,651,724	-				+0.4
2,651,734	-				-1.1
2,651,734	-				+0.7
2,651,734	-				+0.1
2,651,739	-				-1.1
2,651,746	+				-1.5
2,651,754	-				-0.6
2,651,754	-				-1.5
2,651,754	-				-0.4
2,651,754	-				-0.4
2,651,756	+				-0.5
2,651,766	+				+1.2
2,651,777	+				-1.9
2,651,795	-				-0.8
2,651,822	-				+1.1
2,651,824	+				-1.5
2,651,832	-				-0.3
2,651,832	-				-0.8
2,651,832	-				+0.3
2,651,842	+				-0.3
2,651,847	+				-0.4
2,651,849	+				-0.9
2,651,855	-				-1.4
2,651,855	-				-0.6
2,651,880	+		GFF2634	0.11	-1.9
2,651,885	+		GFF2634	0.11	-1.4
2,651,942	+		GFF2634	0.14	-0.9
2,651,949	-		GFF2634	0.15	-1.5
2,651,950	-		GFF2634	0.15	-0.1
2,651,950	-		GFF2634	0.15	+0.2
2,651,954	+		GFF2634	0.15	-0.4
2,651,954	-		GFF2634	0.15	+0.2
2,651,959	+		GFF2634	0.15	-0.4
2,651,966	-		GFF2634	0.16	-0.3
2,651,976	-		GFF2634	0.16	+1.5
2,651,998	+		GFF2634	0.17	-0.2
2,652,006	+		GFF2634	0.18	-0.1
2,652,006	-		GFF2634	0.18	+0.0
2,652,087	+		GFF2634	0.22	-1.6
2,652,087	+		GFF2634	0.22	+0.2
2,652,089	-		GFF2634	0.22	-0.6
2,652,089	-		GFF2634	0.22	-0.6
2,652,129	-		GFF2634	0.25	-0.9
2,652,138	+		GFF2634	0.25	-0.1
2,652,138	+		GFF2634	0.25	-0.6
2,652,139	-		GFF2634	0.25	+0.5
2,652,146	-		GFF2634	0.26	-0.6
2,652,146	-		GFF2634	0.26	-0.0
2,652,146	-		GFF2634	0.26	-1.2
2,652,148	+		GFF2634	0.26	+0.4
2,652,149	+		GFF2634	0.26	+0.6
2,652,151	-		GFF2634	0.26	+0.2
2,652,157	-		GFF2634	0.26	-0.9
2,652,188	+		GFF2634	0.28	+0.3
2,652,197	-		GFF2634	0.28	-0.5
2,652,202	-		GFF2634	0.29	+0.3
2,652,219	+		GFF2634	0.30	-1.0
2,652,238	-		GFF2634	0.31	+0.2
2,652,244	-		GFF2634	0.31	-1.1
2,652,244	-		GFF2634	0.31	+0.4
2,652,245	+		GFF2634	0.31	-2.1
2,652,246	+		GFF2634	0.31	+0.2
2,652,255	+		GFF2634	0.32	-0.8
2,652,259	-		GFF2634	0.32	-0.7
2,652,266	+		GFF2634	0.32	-0.6
2,652,273	+		GFF2634	0.33	-2.1
2,652,276	-		GFF2634	0.33	-0.9
2,652,293	+		GFF2634	0.34	-0.8
2,652,311	-		GFF2634	0.35	+0.1
2,652,331	-		GFF2634	0.36	-1.2
2,652,347	-		GFF2634	0.37	+0.6