Strain Fitness in Sphingobium sp. HT1-2 around GFF2620

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,639,919	+		GFF2618	0.67	-0.4
2,639,919	+		GFF2618	0.67	-1.0
2,639,919	+		GFF2618	0.67	-0.9
2,639,919	+		GFF2618	0.67	-0.5
2,639,919	+		GFF2618	0.67	-0.4
2,639,927	-		GFF2618	0.68	+0.9
2,639,945	+		GFF2618	0.71	+0.2
2,639,955	-		GFF2618	0.72	-0.1
2,639,958	+		GFF2618	0.73	-1.6
2,639,966	-		GFF2618	0.74	-1.3
2,639,968	+		GFF2618	0.74	+0.4
2,639,973	+		GFF2618	0.75	-1.4
2,639,973	+		GFF2618	0.75	-1.5
2,639,981	-		GFF2618	0.76	-1.4
2,639,990	+		GFF2618	0.78	-0.1
2,639,990	+		GFF2618	0.78	-0.3
2,639,990	+		GFF2618	0.78	-1.0
2,639,990	+		GFF2618	0.78	-0.9
2,640,018	+		GFF2618	0.82	+0.0
2,640,018	+		GFF2618	0.82	-1.7
2,640,026	-		GFF2618	0.83	-1.8
2,640,027	-		GFF2618	0.84	+0.4
2,640,033	-		GFF2618	0.85	+0.9
2,640,085	-				+0.3
2,640,098	+				+1.0
2,640,106	-				-1.4
2,640,106	-				-1.4
2,640,118	+				-0.6
2,640,126	-				-0.1
2,640,133	+				+0.5
2,640,133	+				-0.8
2,640,133	+				-0.9
2,640,141	-				+0.6
2,640,141	-				-0.8
2,640,141	-				+0.7
2,640,147	-				-1.1
2,640,154	+				-0.5
2,640,154	+				+0.1
2,640,154	+				-0.1
2,640,154	+				-1.3
2,640,154	+				+1.1
2,640,154	+				-2.8
2,640,162	-				-0.8
2,640,162	-				-1.3
2,640,162	-				-0.3
2,640,162	-				-2.1
2,640,167	-				-0.3
2,640,175	-				-0.1
2,640,186	-				+1.2
2,640,205	+				+1.8
2,640,206	-				-1.9
2,640,211	+				+0.5
2,640,211	-				-0.7
2,640,211	-				-1.7
2,640,219	-		GFF2619	0.10	+0.1
2,640,224	+		GFF2619	0.11	+0.2
2,640,232	-		GFF2619	0.12	-0.2
2,640,254	-		GFF2619	0.16	-1.0
2,640,254	-		GFF2619	0.16	-1.8
2,640,279	+		GFF2619	0.20	-0.8
2,640,300	+		GFF2619	0.23	-0.3
2,640,332	-		GFF2619	0.28	-0.6
2,640,332	-		GFF2619	0.28	+0.5
2,640,372	+		GFF2619	0.35	-1.1
2,640,396	+		GFF2619	0.38	-0.4
2,640,408	-		GFF2619	0.40	+0.2
2,640,422	-		GFF2619	0.43	-0.2
2,640,427	-		GFF2619	0.43	+0.4
2,640,437	+		GFF2619	0.45	-0.5
2,640,437	-		GFF2619	0.45	-1.4
2,640,437	-		GFF2619	0.45	-1.1
2,640,441	-		GFF2619	0.46	-2.4
2,640,458	-		GFF2619	0.48	-2.0
2,640,460	+		GFF2619	0.49	+0.7
2,640,460	+		GFF2619	0.49	-1.1
2,640,460	+		GFF2619	0.49	-1.5
2,640,460	+		GFF2619	0.49	+0.5
2,640,460	+		GFF2619	0.49	+0.4
2,640,468	-		GFF2619	0.50	-0.8
2,640,468	-		GFF2619	0.50	-0.9
2,640,473	-		GFF2619	0.51	+0.4
2,640,480	+		GFF2619	0.52	+0.7
2,640,492	+		GFF2619	0.54	+1.1
2,640,512	+		GFF2619	0.57	-0.8
2,640,517	+		GFF2619	0.58	-0.8
2,640,519	+		GFF2619	0.58	-0.4
2,640,527	-		GFF2619	0.60	-2.0
2,640,564	-		GFF2619	0.66	+0.0
2,640,571	+		GFF2619	0.67	+1.0
2,640,571	+		GFF2619	0.67	+0.4
2,640,576	+		GFF2619	0.67	+0.1
2,640,578	-		GFF2619	0.68	-0.9
2,640,578	-		GFF2619	0.68	-1.1
2,640,596	+		GFF2619	0.71	-1.3
2,640,612	+		GFF2619	0.73	-0.3
2,640,615	-		GFF2619	0.74	+0.5
2,640,615	-		GFF2619	0.74	-0.7
2,640,620	-		GFF2619	0.75	-1.1
2,640,627	-		GFF2619	0.76	-0.8
2,640,637	+		GFF2619	0.77	-1.1
2,640,655	-		GFF2619	0.80	-0.4
2,640,656	+		GFF2619	0.80	-2.4
2,640,659	-		GFF2619	0.81	-0.1
2,640,675	+		GFF2619	0.83	+0.0
2,640,675	+		GFF2619	0.83	-0.8
2,640,706	+		GFF2619	0.88	+0.4
2,640,709	-		GFF2619	0.89	-0.5
2,640,770	-				+0.5
2,640,814	+				+0.4
2,640,814	+				-0.6
2,640,814	+				-1.8
2,640,817	-				-0.4
2,640,822	-				+0.0
2,640,822	-				+0.4
2,640,827	-				-1.0
2,640,848	+				+1.2
2,640,854	+				-1.7
2,640,863	-				+0.3
2,640,864	+				-1.1
2,640,864	+				+0.4
2,640,874	+				-0.6
2,640,874	+				-0.5
2,640,882	-				-1.2
2,640,882	-				-0.5
2,640,943	-				-0.4
2,640,947	+				+0.6
2,640,955	-				-0.6
2,640,955	-				+0.6
2,640,965	-				-1.4
2,640,996	-		GFF2620	0.11	-0.2
2,641,006	+		GFF2620	0.12	-1.0
2,641,006	+		GFF2620	0.12	-1.6
2,641,007	-		GFF2620	0.12	-0.4
2,641,041	+		GFF2620	0.17	+0.6
2,641,041	+		GFF2620	0.17	-0.3
2,641,044	-		GFF2620	0.17	-0.2
2,641,049	-		GFF2620	0.18	+1.3
2,641,049	-		GFF2620	0.18	+1.2
2,641,049	-		GFF2620	0.18	-2.1
2,641,122	+		GFF2620	0.27	-1.0
2,641,124	+		GFF2620	0.28	-2.5
2,641,213	-		GFF2620	0.39	-1.6
2,641,216	+		GFF2620	0.40	-1.7
2,641,246	+		GFF2620	0.44	+0.2
2,641,246	+		GFF2620	0.44	-1.7
2,641,246	+		GFF2620	0.44	-0.6
2,641,249	-		GFF2620	0.44	+0.1
2,641,249	-		GFF2620	0.44	-0.2
2,641,281	+		GFF2620	0.48	+1.0
2,641,281	+		GFF2620	0.48	+1.6
2,641,289	-		GFF2620	0.49	-1.9
2,641,290	-		GFF2620	0.49	-0.1
2,641,295	-		GFF2620	0.50	-0.7
2,641,305	-		GFF2620	0.51	-0.8
2,641,306	+		GFF2620	0.52	+0.4
2,641,307	+		GFF2620	0.52	+0.1
2,641,312	+		GFF2620	0.52	-1.9
2,641,320	-		GFF2620	0.53	+0.9
2,641,332	-		GFF2620	0.55	+0.6
2,641,334	+		GFF2620	0.55	+1.0
2,641,334	+		GFF2620	0.55	+1.2
2,641,334	+		GFF2620	0.55	-0.5
2,641,334	+		GFF2620	0.55	+0.8
2,641,334	+		GFF2620	0.55	+1.0
2,641,334	+		GFF2620	0.55	-0.4
2,641,334	+		GFF2620	0.55	+0.4
2,641,334	+		GFF2620	0.55	-0.9
2,641,342	-		GFF2620	0.56	+0.6
2,641,365	-		GFF2620	0.59	-0.4
2,641,374	+		GFF2620	0.60	-0.8
2,641,382	-		GFF2620	0.61	+1.0
2,641,392	+		GFF2620	0.63	+0.8
2,641,394	+		GFF2620	0.63	-0.5
2,641,400	-		GFF2620	0.64	+0.6
2,641,405	-		GFF2620	0.64	+0.5
2,641,417	+		GFF2620	0.66	+0.8
2,641,417	+		GFF2620	0.66	-1.0
2,641,417	-		GFF2620	0.66	+0.0
2,641,425	-		GFF2620	0.67	-0.2
2,641,425	-		GFF2620	0.67	-0.9
2,641,427	+		GFF2620	0.67	-0.1
2,641,427	+		GFF2620	0.67	+0.3
2,641,435	-		GFF2620	0.68	+0.2
2,641,442	+		GFF2620	0.69	-1.1
2,641,458	+		GFF2620	0.71	-2.2
2,641,458	+		GFF2620	0.71	-1.0
2,641,458	+		GFF2620	0.71	-1.1
2,641,460	+		GFF2620	0.72	-0.1
2,641,461	-		GFF2620	0.72	-0.6
2,641,466	-		GFF2620	0.72	+1.4
2,641,468	+		GFF2620	0.73	+0.5
2,641,468	+		GFF2620	0.73	-0.4
2,641,468	+		GFF2620	0.73	+0.9
2,641,468	+		GFF2620	0.73	+1.0
2,641,468	+		GFF2620	0.73	+0.5
2,641,468	+		GFF2620	0.73	-0.3
2,641,468	+		GFF2620	0.73	-0.2
2,641,468	+		GFF2620	0.73	-0.6
2,641,468	+		GFF2620	0.73	-1.0
2,641,468	+		GFF2620	0.73	+0.6
2,641,473	+		GFF2620	0.73	-1.1
2,641,473	+		GFF2620	0.73	+0.4
2,641,473	+		GFF2620	0.73	+0.5
2,641,473	+		GFF2620	0.73	-0.2
2,641,473	+		GFF2620	0.73	+0.4
2,641,473	+		GFF2620	0.73	-0.2
2,641,476	-		GFF2620	0.74	+0.6
2,641,476	-		GFF2620	0.74	+0.4
2,641,476	-		GFF2620	0.74	-0.1
2,641,476	-		GFF2620	0.74	-0.1
2,641,476	-		GFF2620	0.74	-2.4
2,641,476	-		GFF2620	0.74	-2.1
2,641,476	-		GFF2620	0.74	+1.1
2,641,476	-		GFF2620	0.74	-1.4
2,641,476	-		GFF2620	0.74	-0.4
2,641,476	-		GFF2620	0.74	-1.1
2,641,481	-		GFF2620	0.74	+0.5
2,641,481	-		GFF2620	0.74	-1.4
2,641,481	-		GFF2620	0.74	-1.4
2,641,481	-		GFF2620	0.74	-1.0
2,641,481	-		GFF2620	0.74	-0.5
2,641,481	-		GFF2620	0.74	-2.4
2,641,481	-		GFF2620	0.74	-0.1
2,641,511	+		GFF2620	0.78	-1.1
2,641,519	+		GFF2620	0.79	+0.5
2,641,527	-		GFF2620	0.80	-0.4
2,641,527	-		GFF2620	0.80	-1.8
2,641,527	-		GFF2620	0.80	-0.7
2,641,565	-		GFF2620	0.85	+1.6
2,641,593	+		GFF2620	0.89	-2.5
2,641,602	-				-0.5
2,641,617	-				-1.2
2,641,636	-				+0.6
2,641,645	+				+0.9
2,641,653	-				-0.2
2,641,653	-				+0.3
2,641,660	-				-0.4
2,641,660	-				+0.0
2,641,696	-				-0.0
2,641,733	-				+0.0
2,641,745	+				-0.6
2,641,752	+				-1.4
2,641,752	-				+0.9
2,641,752	-				-0.8
2,641,754	+				-0.4
2,641,754	+				-0.7
2,641,762	-				-0.1
2,641,762	-				-1.1
2,641,762	-				-0.1
2,641,762	-				+0.9
2,641,762	-				+0.1
2,641,767	-				-1.0
2,641,791	+				+0.8
2,641,798	+				+0.2
2,641,798	+				+0.8
2,641,799	-				+0.6
2,641,800	-				-0.6
2,641,806	-				-0.8
2,641,853	+		GFF2621	0.17	-1.1
2,641,853	+		GFF2621	0.17	-1.8
2,641,853	+		GFF2621	0.17	-1.2
2,641,853	+		GFF2621	0.17	+0.0
2,641,853	+		GFF2621	0.17	+0.1
2,641,861	-		GFF2621	0.18	-0.1
2,641,861	-		GFF2621	0.18	+1.1
2,641,861	-		GFF2621	0.18	+1.0
2,641,861	-		GFF2621	0.18	-0.7
2,641,863	+		GFF2621	0.19	-1.4
2,641,876	-		GFF2621	0.21	-0.1
2,641,878	+		GFF2621	0.21	+0.5
2,641,878	+		GFF2621	0.21	+0.2
2,641,897	+		GFF2621	0.24	-0.8
2,641,899	+		GFF2621	0.25	+0.5
2,641,902	+		GFF2621	0.25	-1.3
2,641,902	+		GFF2621	0.25	-0.9
2,641,905	-		GFF2621	0.26	-0.2
2,641,907	-		GFF2621	0.26	+0.6
2,641,928	-		GFF2621	0.30	+0.4
2,641,952	-		GFF2621	0.34	+0.0
2,641,952	-		GFF2621	0.34	-0.9
2,641,971	-		GFF2621	0.37	-0.9
2,641,986	-		GFF2621	0.40	-2.1
2,641,994	+		GFF2621	0.41	-0.7
2,642,002	-		GFF2621	0.43	-1.7
2,642,014	+		GFF2621	0.45	-0.1
2,642,020	+		GFF2621	0.46	-0.6
2,642,026	+		GFF2621	0.47	+0.7
2,642,028	-		GFF2621	0.47	+0.5
2,642,030	+		GFF2621	0.48	-1.7
2,642,094	+		GFF2621	0.59	+0.2
2,642,097	-		GFF2621	0.59	-1.0
2,642,098	+		GFF2621	0.59	-0.7
2,642,106	-		GFF2621	0.61	+1.0
2,642,150	+		GFF2621	0.68	+0.9
2,642,150	+		GFF2621	0.68	-0.8
2,642,150	+		GFF2621	0.68	-0.8
2,642,150	+		GFF2621	0.68	+0.0
2,642,150	+		GFF2621	0.68	-0.3
2,642,150	+		GFF2621	0.68	+0.1
2,642,150	+		GFF2621	0.68	+0.5
2,642,150	+		GFF2621	0.68	+1.1
2,642,150	+		GFF2621	0.68	+1.1
2,642,150	+		GFF2621	0.68	+1.1
2,642,158	-		GFF2621	0.70	-1.3
2,642,158	-		GFF2621	0.70	-1.2
2,642,158	-		GFF2621	0.70	-0.0
2,642,158	-		GFF2621	0.70	-0.5
2,642,158	-		GFF2621	0.70	+0.5
2,642,158	-		GFF2621	0.70	-1.9
2,642,158	-		GFF2621	0.70	-1.0
2,642,158	-		GFF2621	0.70	-0.8
2,642,158	-		GFF2621	0.70	+0.0
2,642,158	-		GFF2621	0.70	-1.1
2,642,158	-		GFF2621	0.70	-0.6
2,642,158	-		GFF2621	0.70	-0.7
2,642,158	-		GFF2621	0.70	-0.7
2,642,158	-		GFF2621	0.70	+1.5
2,642,158	-		GFF2621	0.70	+0.6
2,642,165	+		GFF2621	0.71	-0.6
2,642,165	+		GFF2621	0.71	+0.3
2,642,168	-		GFF2621	0.72	-1.5
2,642,179	-		GFF2621	0.73	-0.4
2,642,197	-		GFF2621	0.77	+0.4
2,642,203	+		GFF2621	0.78	-0.4
2,642,203	+		GFF2621	0.78	-1.7
2,642,215	+		GFF2621	0.80	-0.4
2,642,218	-		GFF2621	0.80	+1.0
2,642,220	+		GFF2621	0.81	+0.6
2,642,223	-		GFF2621	0.81	+0.3
2,642,228	-		GFF2621	0.82	-0.1
2,642,268	+		GFF2621	0.89	-1.5
2,642,278	+				-1.4
2,642,306	+				-0.8
2,642,334	+				-0.6
2,642,334	+				-1.5
2,642,339	+				+0.6
2,642,342	-				+0.9
2,642,342	-				-1.0
2,642,342	-				+0.1
2,642,342	-				+0.1
2,642,362	-				-0.5
2,642,390	+				+0.3
2,642,412	-				-0.1
2,642,414	+				+1.1
2,642,426	+				+0.3
2,642,427	+				-1.4
2,642,433	+				-1.1
2,642,435	-				-0.6
2,642,441	-				+0.8
2,642,480	+				-1.0
2,642,506	+		GFF2622	0.10	+0.3
2,642,506	+		GFF2622	0.10	-0.5
2,642,511	+		GFF2622	0.11	-0.1
2,642,527	-		GFF2622	0.12	-0.8
2,642,534	-		GFF2622	0.13	+0.3
2,642,539	+		GFF2622	0.13	-0.9
2,642,545	-		GFF2622	0.14	+1.1
2,642,559	-		GFF2622	0.15	+0.3
2,642,584	+		GFF2622	0.17	+0.4
2,642,589	-		GFF2622	0.17	-0.4
2,642,666	+		GFF2622	0.24	+0.5
2,642,666	+		GFF2622	0.24	-0.5
2,642,674	-		GFF2622	0.25	-0.5