Strain Fitness in Sphingobium sp. HT1-2 around GFF2587

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,600,924	+		GFF2585	0.83	+1.7
2,600,930	+		GFF2585	0.83	-0.1
2,600,943	-		GFF2585	0.84	-1.4
2,600,956	+		GFF2585	0.84	+2.3
2,600,960	+		GFF2585	0.84	+0.2
2,600,964	-		GFF2585	0.85	-0.5
2,600,968	-		GFF2585	0.85	-0.1
2,601,005	-		GFF2585	0.87	+0.0
2,601,011	+		GFF2585	0.87	-0.7
2,601,019	-		GFF2585	0.87	+0.1
2,601,038	+		GFF2585	0.88	-0.7
2,601,049	+		GFF2585	0.89	-1.2
2,601,054	+		GFF2585	0.89	+0.8
2,601,057	-		GFF2585	0.89	-0.3
2,601,062	-		GFF2585	0.89	+0.1
2,601,067	-		GFF2585	0.90	-0.3
2,601,074	-				+0.5
2,601,074	-				+0.5
2,601,081	+				-1.0
2,601,081	+				-0.7
2,601,081	+				-0.0
2,601,089	-				-0.8
2,601,109	+				-0.7
2,601,113	-				-0.1
2,601,114	+				-0.7
2,601,117	-				+0.4
2,601,117	-				+0.1
2,601,122	-				-0.8
2,601,126	+				-0.5
2,601,128	+				-0.1
2,601,128	+				-0.3
2,601,128	+				-0.5
2,601,128	+				-0.9
2,601,128	+				-0.2
2,601,133	+				+0.2
2,601,136	-				+0.4
2,601,137	+				-0.0
2,601,138	+				-2.1
2,601,139	+				-1.2
2,601,146	-				+0.5
2,601,163	+				+0.3
2,601,171	-				-0.1
2,601,197	+				-0.3
2,601,206	-				-1.6
2,601,214	+				+0.6
2,601,214	+				-0.8
2,601,222	-				-0.9
2,601,222	-				+0.7
2,601,224	+				-1.1
2,601,243	+				+0.3
2,601,243	+				-1.2
2,601,251	-				-0.5
2,601,251	-				-0.6
2,601,279	+				+2.2
2,601,284	+				-0.5
2,601,287	-				-0.3
2,601,287	-				-0.1
2,601,287	-				+0.1
2,601,287	-				+0.4
2,601,287	-				-1.2
2,601,304	-				-0.9
2,601,306	-				+0.4
2,601,306	-				-0.8
2,601,313	+				-0.9
2,601,317	+				-1.1
2,601,385	+		GFF2586	0.16	-0.5
2,601,390	-		GFF2586	0.17	+0.5
2,601,429	+		GFF2586	0.23	+0.0
2,601,464	-		GFF2586	0.29	+1.2
2,601,464	-		GFF2586	0.29	+0.0
2,601,466	+		GFF2586	0.29	-0.4
2,601,474	-		GFF2586	0.30	-1.1
2,601,479	-		GFF2586	0.31	-0.6
2,601,481	+		GFF2586	0.32	+0.5
2,601,481	+		GFF2586	0.32	-0.6
2,601,489	-		GFF2586	0.33	-0.4
2,601,489	-		GFF2586	0.33	-0.3
2,601,505	+		GFF2586	0.35	+0.9
2,601,510	+		GFF2586	0.36	-1.1
2,601,528	-		GFF2586	0.39	-0.7
2,601,528	-		GFF2586	0.39	+1.3
2,601,535	+		GFF2586	0.40	-0.5
2,601,539	+		GFF2586	0.41	-0.3
2,601,539	+		GFF2586	0.41	-0.8
2,601,539	+		GFF2586	0.41	+1.9
2,601,547	-		GFF2586	0.42	+1.5
2,601,547	-		GFF2586	0.42	-1.2
2,601,570	+		GFF2586	0.46	-0.6
2,601,589	+		GFF2586	0.49	-0.3
2,601,597	-		GFF2586	0.50	-1.1
2,601,597	-		GFF2586	0.50	-0.6
2,601,597	-		GFF2586	0.50	+0.0
2,601,597	-		GFF2586	0.50	-1.6
2,601,597	-		GFF2586	0.50	-0.7
2,601,623	+		GFF2586	0.54	-0.5
2,601,645	+		GFF2586	0.58	+0.3
2,601,690	+		GFF2586	0.65	-0.9
2,601,690	+		GFF2586	0.65	-1.7
2,601,692	+		GFF2586	0.65	-0.6
2,601,692	+		GFF2586	0.65	-0.8
2,601,692	+		GFF2586	0.65	+0.0
2,601,693	-		GFF2586	0.65	-1.1
2,601,700	-		GFF2586	0.66	-1.1
2,601,716	-		GFF2586	0.69	-2.0
2,601,727	+		GFF2586	0.70	-0.9
2,601,758	+		GFF2586	0.75	-0.1
2,601,758	+		GFF2586	0.75	-0.5
2,601,779	+		GFF2586	0.79	+0.7
2,601,783	-		GFF2586	0.79	-0.5
2,601,807	+		GFF2586	0.83	-1.1
2,601,807	+		GFF2586	0.83	-0.5
2,601,812	+		GFF2586	0.84	-0.5
2,601,815	-		GFF2586	0.84	-0.3
2,601,859	+				-1.1
2,601,870	-				+0.7
2,601,870	-				-1.0
2,601,885	+				-0.5
2,601,928	-				-0.9
2,601,932	+				+0.4
2,601,932	+				-1.1
2,601,936	+				-2.3
2,601,940	-				+0.1
2,601,940	-				-1.1
2,601,940	-				+0.4
2,601,940	-				-0.3
2,601,950	-				+0.2
2,601,978	+				+0.9
2,601,978	+				-0.1
2,601,978	+				-0.4
2,601,986	-				+0.9
2,601,986	-				-0.3
2,601,986	-				-1.0
2,601,986	-				+0.8
2,601,986	-				+0.9
2,601,986	-				-1.5
2,602,011	-		GFF2587	0.10	-0.5
2,602,034	+		GFF2587	0.13	+0.5
2,602,042	-		GFF2587	0.14	-2.4
2,602,066	-		GFF2587	0.17	-1.2
2,602,068	-		GFF2587	0.17	-0.3
2,602,091	+		GFF2587	0.19	-2.1
2,602,103	+		GFF2587	0.21	-0.1
2,602,110	+		GFF2587	0.21	-0.6
2,602,111	-		GFF2587	0.21	+0.2
2,602,115	+		GFF2587	0.22	-1.0
2,602,115	+		GFF2587	0.22	-2.2
2,602,115	+		GFF2587	0.22	-0.1
2,602,115	+		GFF2587	0.22	+0.1
2,602,115	+		GFF2587	0.22	+0.2
2,602,115	+		GFF2587	0.22	-0.2
2,602,117	-		GFF2587	0.22	-0.3
2,602,123	-		GFF2587	0.23	-1.4
2,602,123	-		GFF2587	0.23	-0.5
2,602,189	-		GFF2587	0.30	-0.3
2,602,202	-		GFF2587	0.32	-2.0
2,602,205	+		GFF2587	0.32	-1.6
2,602,205	+		GFF2587	0.32	-1.6
2,602,207	-		GFF2587	0.32	+0.0
2,602,212	-		GFF2587	0.33	+0.4
2,602,213	-		GFF2587	0.33	+0.3
2,602,284	-		GFF2587	0.41	+0.1
2,602,292	+		GFF2587	0.42	+0.3
2,602,297	+		GFF2587	0.42	-0.7
2,602,306	-		GFF2587	0.43	-2.2
2,602,312	-		GFF2587	0.44	-0.6
2,602,313	+		GFF2587	0.44	-1.4
2,602,317	+		GFF2587	0.44	-1.8
2,602,321	-		GFF2587	0.45	-1.1
2,602,331	-		GFF2587	0.46	-0.7
2,602,331	-		GFF2587	0.46	-1.6
2,602,331	-		GFF2587	0.46	-1.0
2,602,331	-		GFF2587	0.46	+0.2
2,602,347	+		GFF2587	0.48	+1.2
2,602,347	+		GFF2587	0.48	+0.7
2,602,347	+		GFF2587	0.48	+0.9
2,602,355	-		GFF2587	0.49	-0.9
2,602,355	-		GFF2587	0.49	+0.3
2,602,355	-		GFF2587	0.49	-1.2
2,602,355	-		GFF2587	0.49	-1.7
2,602,355	-		GFF2587	0.49	-0.3
2,602,355	-		GFF2587	0.49	+0.5
2,602,355	-		GFF2587	0.49	-0.3
2,602,355	-		GFF2587	0.49	+1.6
2,602,355	-		GFF2587	0.49	+0.7
2,602,355	-		GFF2587	0.49	-1.2
2,602,355	-		GFF2587	0.49	-1.0
2,602,355	-		GFF2587	0.49	-1.0
2,602,374	+		GFF2587	0.51	-0.1
2,602,374	+		GFF2587	0.51	-1.3
2,602,374	+		GFF2587	0.51	-1.9
2,602,374	+		GFF2587	0.51	+0.7
2,602,374	-		GFF2587	0.51	-0.5
2,602,382	-		GFF2587	0.51	-0.9
2,602,382	-		GFF2587	0.51	+0.3
2,602,382	-		GFF2587	0.51	-1.3
2,602,382	-		GFF2587	0.51	-0.3
2,602,382	-		GFF2587	0.51	-0.6
2,602,401	-		GFF2587	0.54	-0.7
2,602,401	-		GFF2587	0.54	+1.5
2,602,401	-		GFF2587	0.54	-1.1
2,602,485	-		GFF2587	0.63	-1.1
2,602,488	+		GFF2587	0.63	-0.7
2,602,488	+		GFF2587	0.63	-1.7
2,602,488	+		GFF2587	0.63	-0.1
2,602,488	+		GFF2587	0.63	+1.4
2,602,488	+		GFF2587	0.63	+0.5
2,602,488	+		GFF2587	0.63	+0.2
2,602,488	+		GFF2587	0.63	+1.6
2,602,488	+		GFF2587	0.63	+0.6
2,602,493	+		GFF2587	0.64	+0.3
2,602,496	-		GFF2587	0.64	+0.2
2,602,496	-		GFF2587	0.64	-1.5
2,602,496	-		GFF2587	0.64	-1.6
2,602,496	-		GFF2587	0.64	-0.8
2,602,496	-		GFF2587	0.64	-1.1
2,602,496	-		GFF2587	0.64	-1.1
2,602,501	-		GFF2587	0.65	-0.6
2,602,501	-		GFF2587	0.65	-1.1
2,602,501	-		GFF2587	0.65	+0.2
2,602,501	-		GFF2587	0.65	-2.0
2,602,501	-		GFF2587	0.65	-0.1
2,602,501	-		GFF2587	0.65	-0.3
2,602,506	-		GFF2587	0.65	-1.5
2,602,511	+		GFF2587	0.66	+1.7
2,602,511	+		GFF2587	0.66	-0.3
2,602,511	+		GFF2587	0.66	-0.5
2,602,511	+		GFF2587	0.66	+0.0
2,602,516	+		GFF2587	0.66	+0.4
2,602,519	-		GFF2587	0.67	-1.4
2,602,524	-		GFF2587	0.67	-1.7
2,602,524	-		GFF2587	0.67	+1.3
2,602,524	-		GFF2587	0.67	-0.2
2,602,549	+		GFF2587	0.70	-1.5
2,602,549	+		GFF2587	0.70	-1.5
2,602,557	-		GFF2587	0.71	-0.8
2,602,567	-		GFF2587	0.72	+1.2
2,602,591	-		GFF2587	0.75	+0.2
2,602,597	-		GFF2587	0.75	-1.3
2,602,597	-		GFF2587	0.75	-1.3
2,602,601	-		GFF2587	0.76	+0.1
2,602,641	+		GFF2587	0.80	-2.2
2,602,641	+		GFF2587	0.80	-0.7
2,602,665	-		GFF2587	0.83	-1.1
2,602,679	-		GFF2587	0.84	-0.9
2,602,689	-		GFF2587	0.85	-1.1
2,602,745	+				+0.5
2,602,758	-				-1.3
2,602,761	+				-1.0
2,602,761	+				-0.3
2,602,761	+				-1.6
2,602,769	-				-1.0
2,602,787	-				-0.3
2,602,812	-				-0.8
2,602,819	+				-2.0
2,602,827	-				-0.1
2,602,827	-				+0.0
2,602,854	-				-1.1
2,602,856	+				-1.3
2,602,860	-				-0.2
2,602,872	-				-1.0
2,602,872	-				+0.3
2,602,906	+				-1.1
2,602,914	+				+0.9
2,602,914	-				-0.2
2,602,922	+				+0.2
2,602,930	-				-1.0
2,602,947	-				-0.5
2,602,947	-				+0.2
2,602,947	-				-0.8
2,602,949	+				+0.3
2,602,949	+				-0.6
2,602,957	-				-1.0
2,602,966	+				-1.3
2,602,974	-				-1.1
2,602,974	-				-1.0
2,602,974	-				+0.6
2,602,977	+				-2.1
2,602,977	+				-1.5
2,602,977	+				+0.2
2,602,977	+				+0.1
2,602,977	+				-1.1
2,602,979	-				-0.1
2,602,985	-				-0.8
2,602,985	-				-1.5
2,603,010	+				-1.9
2,603,023	+				-0.3
2,603,038	-				-0.9
2,603,048	-				-0.5
2,603,058	+				-0.7
2,603,059	-				-1.2
2,603,060	-				-0.5
2,603,070	+				-0.6
2,603,070	+				-1.2
2,603,078	-				+0.7
2,603,078	-				+0.2
2,603,086	-				+1.5
2,603,114	-				-0.5
2,603,119	-				-1.3
2,603,145	+		GFF2588	0.11	-1.1
2,603,150	+		GFF2588	0.11	-0.3
2,603,151	+		GFF2588	0.11	+0.7
2,603,173	-		GFF2588	0.12	-0.9
2,603,238	-		GFF2588	0.16	-0.2
2,603,253	-		GFF2588	0.17	-0.7
2,603,258	+		GFF2588	0.17	-0.8
2,603,264	+		GFF2588	0.17	-1.7
2,603,280	+		GFF2588	0.18	-0.3
2,603,280	+		GFF2588	0.18	-1.5
2,603,280	+		GFF2588	0.18	-0.6
2,603,280	+		GFF2588	0.18	-0.4
2,603,288	-		GFF2588	0.18	-1.1
2,603,288	-		GFF2588	0.18	+0.4
2,603,288	-		GFF2588	0.18	+0.5
2,603,288	-		GFF2588	0.18	+0.9
2,603,288	-		GFF2588	0.18	-0.1
2,603,288	-		GFF2588	0.18	-1.2
2,603,288	-		GFF2588	0.18	-3.0
2,603,288	-		GFF2588	0.18	-0.9
2,603,290	+		GFF2588	0.19	-0.8
2,603,298	-		GFF2588	0.19	-0.5
2,603,298	-		GFF2588	0.19	-0.8
2,603,298	-		GFF2588	0.19	-0.6
2,603,300	+		GFF2588	0.19	-1.0
2,603,300	+		GFF2588	0.19	-0.6
2,603,308	-		GFF2588	0.20	-0.1
2,603,308	-		GFF2588	0.20	-0.7
2,603,308	-		GFF2588	0.20	+0.2
2,603,320	-		GFF2588	0.20	-1.1
2,603,322	+		GFF2588	0.20	+0.2
2,603,322	+		GFF2588	0.20	+0.5
2,603,327	+		GFF2588	0.21	-1.8
2,603,327	+		GFF2588	0.21	-1.4
2,603,327	+		GFF2588	0.21	+0.7
2,603,330	-		GFF2588	0.21	-1.5
2,603,330	-		GFF2588	0.21	-1.4
2,603,330	-		GFF2588	0.21	-0.8
2,603,330	-		GFF2588	0.21	+0.1
2,603,330	-		GFF2588	0.21	+0.7
2,603,335	-		GFF2588	0.21	+0.3
2,603,335	-		GFF2588	0.21	-1.3
2,603,335	-		GFF2588	0.21	+0.3
2,603,335	-		GFF2588	0.21	-0.5
2,603,335	-		GFF2588	0.21	+0.9
2,603,345	+		GFF2588	0.22	-1.5
2,603,349	+		GFF2588	0.22	-0.5
2,603,350	+		GFF2588	0.22	-1.8
2,603,350	+		GFF2588	0.22	+1.3
2,603,353	-		GFF2588	0.22	+0.8
2,603,355	+		GFF2588	0.22	-0.6
2,603,363	+		GFF2588	0.23	-0.5
2,603,363	-		GFF2588	0.23	+0.5
2,603,365	+		GFF2588	0.23	-2.1
2,603,376	+		GFF2588	0.23	+0.8
2,603,381	+		GFF2588	0.24	-0.3
2,603,392	-		GFF2588	0.24	+1.7
2,603,405	+		GFF2588	0.25	-0.9
2,603,415	+		GFF2588	0.26	-0.9
2,603,423	-		GFF2588	0.26	-0.1
2,603,429	+		GFF2588	0.26	+0.0
2,603,430	-		GFF2588	0.26	-0.4
2,603,434	+		GFF2588	0.27	-1.2
2,603,434	+		GFF2588	0.27	+1.4
2,603,440	+		GFF2588	0.27	-0.3
2,603,441	+		GFF2588	0.27	-2.0
2,603,442	-		GFF2588	0.27	+0.4
2,603,442	-		GFF2588	0.27	+0.5
2,603,442	-		GFF2588	0.27	-0.3
2,603,442	-		GFF2588	0.27	-0.6
2,603,449	-		GFF2588	0.27	-0.9
2,603,462	-		GFF2588	0.28	-0.7
2,603,463	+		GFF2588	0.28	+1.0
2,603,466	-		GFF2588	0.28	-0.3
2,603,472	+		GFF2588	0.29	-1.2
2,603,528	-		GFF2588	0.32	-1.6
2,603,560	+		GFF2588	0.34	-0.6
2,603,560	+		GFF2588	0.34	+0.3
2,603,560	+		GFF2588	0.34	+1.2
2,603,567	+		GFF2588	0.34	+0.1
2,603,567	+		GFF2588	0.34	-0.6
2,603,568	-		GFF2588	0.34	-0.6
2,603,568	-		GFF2588	0.34	-0.8
2,603,575	-		GFF2588	0.34	-0.0
2,603,575	-		GFF2588	0.34	-1.2
2,603,594	+		GFF2588	0.35	-0.6
2,603,611	+		GFF2588	0.36	-0.7
2,603,611	+		GFF2588	0.36	+0.2
2,603,618	+		GFF2588	0.37	-1.1
2,603,619	-		GFF2588	0.37	-0.8
2,603,621	-		GFF2588	0.37	-0.5
2,603,623	+		GFF2588	0.37	-0.6
2,603,650	-		GFF2588	0.39	+0.5
2,603,651	+		GFF2588	0.39	-1.2
2,603,684	+		GFF2588	0.40	+0.1
2,603,705	+		GFF2588	0.42	+0.1
2,603,716	+		GFF2588	0.42	-0.1
2,603,716	+		GFF2588	0.42	-0.7
2,603,716	+		GFF2588	0.42	-0.6
2,603,724	-		GFF2588	0.43	-1.3
2,603,740	+		GFF2588	0.44	-0.3
2,603,755	-		GFF2588	0.44	+0.3
2,603,760	-		GFF2588	0.45	+1.2
2,603,777	+		GFF2588	0.46	-1.2
2,603,785	-		GFF2588	0.46	-0.6
2,603,794	-		GFF2588	0.47	-1.1