Strain Fitness in Sphingobium sp. HT1-2 around GFF2550

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,568,638	-		GFF2549	0.61	-1.1
2,568,638	-		GFF2549	0.61	+0.2
2,568,638	-		GFF2549	0.61	-0.8
2,568,638	-		GFF2549	0.61	+0.2
2,568,638	-		GFF2549	0.61	+1.1
2,568,638	-		GFF2549	0.61	-0.3
2,568,645	+		GFF2549	0.62	+1.1
2,568,656	-		GFF2549	0.62	+0.4
2,568,663	+		GFF2549	0.62	-1.7
2,568,663	+		GFF2549	0.62	-0.3
2,568,663	+		GFF2549	0.62	-0.7
2,568,667	+		GFF2549	0.63	-1.6
2,568,667	+		GFF2549	0.63	-1.0
2,568,671	-		GFF2549	0.63	-0.5
2,568,671	-		GFF2549	0.63	-0.6
2,568,675	-		GFF2549	0.63	-0.9
2,568,678	+		GFF2549	0.63	-1.2
2,568,697	+		GFF2549	0.64	+0.6
2,568,728	-		GFF2549	0.65	+0.1
2,568,827	-		GFF2549	0.70	+0.4
2,568,896	-		GFF2549	0.73	+0.1
2,568,908	-		GFF2549	0.73	-1.6
2,568,950	-		GFF2549	0.75	-0.5
2,568,999	+		GFF2549	0.78	+1.0
2,569,012	-		GFF2549	0.78	-0.4
2,569,017	-		GFF2549	0.78	+0.7
2,569,021	+		GFF2549	0.78	+1.1
2,569,023	+		GFF2549	0.79	-0.2
2,569,023	+		GFF2549	0.79	-1.6
2,569,029	-		GFF2549	0.79	-0.4
2,569,031	-		GFF2549	0.79	-0.3
2,569,041	-		GFF2549	0.79	-1.2
2,569,041	-		GFF2549	0.79	-0.7
2,569,052	+		GFF2549	0.80	-0.6
2,569,055	+		GFF2549	0.80	+0.4
2,569,060	+		GFF2549	0.80	+0.2
2,569,081	+		GFF2549	0.81	-0.5
2,569,083	+		GFF2549	0.81	-0.3
2,569,083	+		GFF2549	0.81	-0.2
2,569,084	-		GFF2549	0.81	-1.1
2,569,089	-		GFF2549	0.82	+0.3
2,569,111	+		GFF2549	0.83	-0.3
2,569,126	+		GFF2549	0.83	+0.5
2,569,126	+		GFF2549	0.83	-1.3
2,569,138	+		GFF2549	0.84	+1.2
2,569,141	-		GFF2549	0.84	-0.8
2,569,143	+		GFF2549	0.84	+0.7
2,569,146	-		GFF2549	0.84	-0.8
2,569,171	+		GFF2549	0.85	-1.2
2,569,177	+		GFF2549	0.86	-0.5
2,569,182	+		GFF2549	0.86	+0.4
2,569,185	+		GFF2549	0.86	-1.1
2,569,218	+		GFF2549	0.87	-0.1
2,569,219	+		GFF2549	0.87	-1.2
2,569,274	+		GFF2549	0.90	-0.7
2,569,274	+		GFF2549	0.90	+0.1
2,569,282	-				+0.7
2,569,282	-				-0.4
2,569,282	-				+0.5
2,569,282	-				-0.7
2,569,297	-				+0.1
2,569,307	-				-0.7
2,569,307	-				-1.4
2,569,307	-				-0.3
2,569,307	-				-0.3
2,569,307	-				-0.2
2,569,317	+				-0.7
2,569,322	+				-1.1
2,569,323	-				-0.5
2,569,341	-				-1.3
2,569,341	-				-0.2
2,569,343	+				-1.5
2,569,344	+				+0.5
2,569,344	+				-0.9
2,569,344	+				+0.7
2,569,351	-				-0.9
2,569,357	-				-0.6
2,569,363	+				-1.6
2,569,370	+				-0.0
2,569,370	+				+0.4
2,569,378	-				+0.9
2,569,378	-				-0.0
2,569,401	+				-0.6
2,569,401	+				-0.7
2,569,401	+				-0.6
2,569,409	-				+0.1
2,569,409	-				+0.2
2,569,409	-				-2.3
2,569,426	-				-0.3
2,569,441	+				-0.9
2,569,454	-				+0.8
2,569,454	-				+0.3
2,569,479	+				-0.8
2,569,489	+				+0.6
2,569,496	+				-0.3
2,569,513	-				+0.6
2,569,518	+				-1.5
2,569,620	+				-0.5
2,569,620	+				+0.4
2,569,620	+				+0.5
2,569,620	+				+1.1
2,569,628	-				-1.5
2,569,634	+				-1.5
2,569,639	+				+0.2
2,569,639	+				-0.3
2,569,659	-		GFF2550	0.17	+2.0
2,569,738	-		GFF2550	0.77	+0.1
2,569,772	-				-0.2
2,569,789	-				-1.8
2,569,878	+				+0.8
2,569,888	+				-0.7
2,569,888	+				-1.4
2,569,896	+				-0.7
2,569,896	+				-1.5
2,569,896	+				+1.4
2,569,896	+				-0.5
2,569,896	+				-1.1
2,569,896	+				-0.5
2,569,896	+				+0.0
2,569,896	+				-2.5
2,569,896	+				-0.3
2,569,896	+				+0.2
2,569,904	-				-1.5
2,569,904	-				-0.8
2,569,904	-				+0.4
2,569,904	-				-0.2
2,569,904	-				-1.1
2,569,904	-				-1.8
2,569,904	-				-1.0
2,569,904	-				-0.4
2,569,904	-				-0.3
2,569,904	-				-0.3
2,569,904	-				+0.5
2,569,904	-				-0.3
2,569,919	+				+1.1
2,569,919	+				+0.7
2,569,927	-		GFF2551	0.11	-1.0
2,569,937	-		GFF2551	0.12	+0.3
2,569,963	+		GFF2551	0.14	-1.5
2,569,963	+		GFF2551	0.14	+0.1
2,569,963	+		GFF2551	0.14	-2.0
2,569,963	+		GFF2551	0.14	+0.1
2,569,963	+		GFF2551	0.14	-1.1
2,569,963	+		GFF2551	0.14	+0.8
2,569,971	-		GFF2551	0.15	-0.6
2,569,971	-		GFF2551	0.15	-1.5
2,569,971	-		GFF2551	0.15	+0.9
2,569,973	+		GFF2551	0.15	-0.7
2,569,989	+		GFF2551	0.17	+0.5
2,569,989	+		GFF2551	0.17	+1.2
2,569,989	+		GFF2551	0.17	-2.3
2,569,989	+		GFF2551	0.17	-0.8
2,569,989	+		GFF2551	0.17	-0.9
2,569,997	-		GFF2551	0.18	-0.4
2,569,999	+		GFF2551	0.18	-1.9
2,570,007	-		GFF2551	0.19	+0.9
2,570,007	-		GFF2551	0.19	+0.3
2,570,010	+		GFF2551	0.19	-0.8
2,570,028	+		GFF2551	0.21	-1.1
2,570,036	+		GFF2551	0.22	-1.3
2,570,049	+		GFF2551	0.24	-1.7
2,570,056	-		GFF2551	0.24	-0.5
2,570,056	-		GFF2551	0.24	-1.1
2,570,056	-		GFF2551	0.24	+0.3
2,570,075	+		GFF2551	0.26	-0.2
2,570,080	+		GFF2551	0.27	+1.6
2,570,080	+		GFF2551	0.27	-0.6
2,570,103	-		GFF2551	0.29	-0.9
2,570,137	+		GFF2551	0.33	+1.0
2,570,138	+		GFF2551	0.33	-0.9
2,570,145	-		GFF2551	0.34	-0.3
2,570,146	-		GFF2551	0.34	-0.2
2,570,151	-		GFF2551	0.34	+1.1
2,570,169	+		GFF2551	0.36	+0.4
2,570,177	-		GFF2551	0.37	-0.6
2,570,187	-		GFF2551	0.38	-0.6
2,570,187	-		GFF2551	0.38	-1.4
2,570,195	-		GFF2551	0.39	-0.5
2,570,200	-		GFF2551	0.40	-2.2
2,570,214	+		GFF2551	0.41	+0.7
2,570,215	+		GFF2551	0.41	-0.3
2,570,242	-		GFF2551	0.44	-0.5
2,570,274	-		GFF2551	0.47	+1.5
2,570,280	-		GFF2551	0.48	-1.3
2,570,292	-		GFF2551	0.49	-0.7
2,570,314	+		GFF2551	0.52	-0.4
2,570,314	+		GFF2551	0.52	+0.0
2,570,322	-		GFF2551	0.53	-0.4
2,570,373	+		GFF2551	0.58	-1.6
2,570,380	+		GFF2551	0.59	+0.5
2,570,388	-		GFF2551	0.60	-0.7
2,570,390	+		GFF2551	0.60	-0.9
2,570,390	+		GFF2551	0.60	+1.3
2,570,456	+		GFF2551	0.67	-0.5
2,570,464	-		GFF2551	0.68	-2.2
2,570,466	+		GFF2551	0.68	-0.5
2,570,466	+		GFF2551	0.68	-0.2
2,570,466	+		GFF2551	0.68	-0.9
2,570,474	+		GFF2551	0.69	+0.4
2,570,474	-		GFF2551	0.69	-0.4
2,570,474	-		GFF2551	0.69	-1.0
2,570,477	-		GFF2551	0.69	+0.3
2,570,507	+		GFF2551	0.72	-1.5
2,570,507	+		GFF2551	0.72	-0.4
2,570,513	+		GFF2551	0.73	-1.4
2,570,515	-		GFF2551	0.73	-0.1
2,570,518	+		GFF2551	0.73	-1.1
2,570,526	-		GFF2551	0.74	+0.1
2,570,536	-		GFF2551	0.75	-0.8
2,570,541	+		GFF2551	0.76	-0.4
2,570,542	+		GFF2551	0.76	+0.7
2,570,542	+		GFF2551	0.76	+0.6
2,570,550	-		GFF2551	0.77	-0.1
2,570,550	-		GFF2551	0.77	-0.9
2,570,565	-		GFF2551	0.78	-0.6
2,570,565	-		GFF2551	0.78	-1.0
2,570,572	-		GFF2551	0.79	+0.5
2,570,592	+		GFF2551	0.81	+0.0
2,570,592	+		GFF2551	0.81	-0.9
2,570,604	+		GFF2551	0.83	+1.4
2,570,625	+		GFF2551	0.85	-1.9
2,570,625	+		GFF2551	0.85	-0.2
2,570,633	-		GFF2551	0.86	-1.0
2,570,633	-		GFF2551	0.86	-0.3
2,570,654	-		GFF2551	0.88	-0.1
2,570,660	-		GFF2551	0.89	+0.8
2,570,677	-				+1.2
2,570,707	+				-0.9
2,570,713	+				+0.0
2,570,715	-				+1.5
2,570,721	-				-0.3
2,570,733	-				+0.2
2,570,740	-				+0.7
2,570,746	+				-1.0
2,570,753	+				-0.3