Strain Fitness in Sphingobium sp. HT1-2 around GFF2531

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,547,487	+		GFF2529	0.45	-1.1
2,547,537	+		GFF2529	0.48	-0.4
2,547,544	+		GFF2529	0.49	-0.2
2,547,561	+		GFF2529	0.50	-0.2
2,547,572	+		GFF2529	0.51	-1.0
2,547,577	+		GFF2529	0.52	+0.9
2,547,583	+		GFF2529	0.52	+1.5
2,547,583	+		GFF2529	0.52	-2.5
2,547,583	+		GFF2529	0.52	-1.5
2,547,583	+		GFF2529	0.52	-0.5
2,547,583	+		GFF2529	0.52	+1.1
2,547,583	+		GFF2529	0.52	-0.7
2,547,583	+		GFF2529	0.52	+0.6
2,547,583	+		GFF2529	0.52	-1.0
2,547,583	+		GFF2529	0.52	-1.5
2,547,583	+		GFF2529	0.52	+1.4
2,547,583	+		GFF2529	0.52	-1.3
2,547,591	-		GFF2529	0.53	-1.8
2,547,591	-		GFF2529	0.53	-1.0
2,547,591	-		GFF2529	0.53	+0.3
2,547,591	-		GFF2529	0.53	-0.5
2,547,591	-		GFF2529	0.53	-0.9
2,547,591	-		GFF2529	0.53	-1.9
2,547,591	-		GFF2529	0.53	-0.6
2,547,591	-		GFF2529	0.53	-0.3
2,547,591	-		GFF2529	0.53	+0.4
2,547,605	+		GFF2529	0.54	-0.3
2,547,605	+		GFF2529	0.54	-0.6
2,547,605	+		GFF2529	0.54	+1.1
2,547,613	-		GFF2529	0.54	+0.5
2,547,639	+		GFF2529	0.56	-0.7
2,547,639	+		GFF2529	0.56	+0.3
2,547,666	+		GFF2529	0.59	+0.9
2,547,666	+		GFF2529	0.59	-1.5
2,547,674	-		GFF2529	0.59	+0.3
2,547,674	-		GFF2529	0.59	+0.9
2,547,674	-		GFF2529	0.59	-0.3
2,547,686	+		GFF2529	0.60	-0.3
2,547,687	+		GFF2529	0.60	+1.4
2,547,688	+		GFF2529	0.60	-0.3
2,547,692	+		GFF2529	0.61	-0.5
2,547,695	-		GFF2529	0.61	-1.1
2,547,754	+		GFF2529	0.65	-1.2
2,547,754	+		GFF2529	0.65	-0.5
2,547,754	+		GFF2529	0.65	-0.3
2,547,754	+		GFF2529	0.65	+0.1
2,547,754	+		GFF2529	0.65	+0.3
2,547,754	+		GFF2529	0.65	-1.0
2,547,754	+		GFF2529	0.65	-0.1
2,547,754	+		GFF2529	0.65	-0.3
2,547,754	+		GFF2529	0.65	-1.3
2,547,754	+		GFF2529	0.65	-0.2
2,547,762	-		GFF2529	0.66	-0.8
2,547,762	-		GFF2529	0.66	+0.0
2,547,762	-		GFF2529	0.66	+0.7
2,547,762	-		GFF2529	0.66	-0.6
2,547,762	-		GFF2529	0.66	-0.7
2,547,762	-		GFF2529	0.66	-0.9
2,547,792	+		GFF2529	0.68	+0.2
2,547,824	+		GFF2529	0.71	+1.0
2,547,831	-		GFF2529	0.71	-1.7
2,547,842	+		GFF2529	0.72	+0.6
2,547,844	+		GFF2529	0.72	+0.6
2,547,849	+		GFF2529	0.73	-1.0
2,547,849	+		GFF2529	0.73	-0.5
2,547,866	+		GFF2529	0.74	+0.3
2,547,868	+		GFF2529	0.74	+0.9
2,547,870	-		GFF2529	0.74	-0.9
2,547,876	+		GFF2529	0.75	-1.1
2,547,876	+		GFF2529	0.75	+0.4
2,547,884	-		GFF2529	0.76	+0.2
2,547,884	-		GFF2529	0.76	-0.7
2,547,884	-		GFF2529	0.76	+0.4
2,547,884	-		GFF2529	0.76	-0.8
2,547,884	-		GFF2529	0.76	-0.3
2,547,885	+		GFF2529	0.76	+0.5
2,547,924	+		GFF2529	0.79	-1.8
2,547,924	+		GFF2529	0.79	+1.3
2,547,932	-		GFF2529	0.79	-0.7
2,547,932	-		GFF2529	0.79	-1.0
2,547,966	+		GFF2529	0.82	+0.7
2,547,981	+		GFF2529	0.83	-1.0
2,547,983	-		GFF2529	0.83	+0.6
2,547,984	-		GFF2529	0.83	-0.7
2,547,991	+		GFF2529	0.84	-0.8
2,547,991	+		GFF2529	0.84	-1.2
2,547,991	+		GFF2529	0.84	-2.0
2,547,991	+		GFF2529	0.84	-1.0
2,547,999	-		GFF2529	0.85	+0.1
2,547,999	-		GFF2529	0.85	-1.3
2,547,999	-		GFF2529	0.85	+0.3
2,547,999	-		GFF2529	0.85	-1.4
2,547,999	-		GFF2529	0.85	-2.2
2,547,999	-		GFF2529	0.85	-0.6
2,547,999	-		GFF2529	0.85	-0.2
2,547,999	-		GFF2529	0.85	-0.5
2,547,999	-		GFF2529	0.85	+0.2
2,547,999	-		GFF2529	0.85	+0.4
2,547,999	-		GFF2529	0.85	+0.3
2,548,011	-		GFF2529	0.85	+1.8
2,548,029	-		GFF2529	0.87	-0.5
2,548,037	+		GFF2529	0.88	-0.7
2,548,037	+		GFF2529	0.88	+0.4
2,548,037	+		GFF2529	0.88	+0.5
2,548,045	-		GFF2529	0.88	-0.3
2,548,045	-		GFF2529	0.88	+0.8
2,548,045	-		GFF2529	0.88	-1.5
2,548,057	+		GFF2529	0.89	+0.2
2,548,065	-		GFF2529	0.90	-0.8
2,548,103	+				-0.2
2,548,109	+				-1.3
2,548,123	+				-0.4
2,548,130	+				+0.1
2,548,171	-				-1.2
2,548,205	+				-0.4
2,548,206	-				-1.5
2,548,213	-				-0.3
2,548,213	-				+0.1
2,548,223	-				-0.3
2,548,234	-				+1.5
2,548,254	+				-1.8
2,548,254	+				+0.7
2,548,254	+				+0.2
2,548,254	+				+0.3
2,548,254	+				-0.6
2,548,256	+				+0.4
2,548,256	+				+0.0
2,548,256	+				-0.6
2,548,256	+				-2.1
2,548,256	+				+0.8
2,548,256	+				-1.0
2,548,256	+				+0.4
2,548,256	+				-0.3
2,548,262	-				-2.2
2,548,262	-				+0.1
2,548,262	-				-0.9
2,548,262	-				+1.0
2,548,262	-				-0.3
2,548,262	-				+0.0
2,548,262	-				-1.6
2,548,264	-				-1.6
2,548,264	-				-1.2
2,548,264	-				-1.1
2,548,264	-				-1.5
2,548,264	-				+0.6
2,548,279	+				+1.3
2,548,279	+				-1.5
2,548,282	-				-0.3
2,548,287	-				-0.9
2,548,318	-				-0.7
2,548,345	-				-0.3
2,548,454	-				+1.0
2,548,493	-				-0.3
2,548,517	+				+0.8
2,548,528	-				+0.9
2,548,535	+				-1.2
2,548,535	+				-0.1
2,548,545	+		GFF2531	0.12	+0.1
2,548,557	+		GFF2531	0.14	-0.4
2,548,557	+		GFF2531	0.14	-0.1
2,548,562	+		GFF2531	0.15	+0.8
2,548,563	+		GFF2531	0.16	+0.2
2,548,569	+		GFF2531	0.17	+0.0
2,548,575	-		GFF2531	0.18	+0.5
2,548,576	-		GFF2531	0.18	-0.3
2,548,596	+		GFF2531	0.22	-1.2
2,548,596	+		GFF2531	0.22	-0.5
2,548,596	+		GFF2531	0.22	-1.1
2,548,596	+		GFF2531	0.22	+0.5
2,548,604	-		GFF2531	0.24	-1.3
2,548,604	-		GFF2531	0.24	+1.3
2,548,611	+		GFF2531	0.26	-0.6
2,548,611	+		GFF2531	0.26	+0.3
2,548,617	-		GFF2531	0.27	-1.2
2,548,619	-		GFF2531	0.27	-1.0
2,548,636	+		GFF2531	0.31	-1.3
2,548,644	-		GFF2531	0.32	+1.4
2,548,644	-		GFF2531	0.32	-1.5
2,548,658	+		GFF2531	0.35	-1.0
2,548,658	+		GFF2531	0.35	+0.7
2,548,661	-		GFF2531	0.36	-0.5
2,548,665	-		GFF2531	0.37	+1.1
2,548,665	-		GFF2531	0.37	+1.3
2,548,666	-		GFF2531	0.37	+0.4
2,548,674	+		GFF2531	0.38	-1.2
2,548,675	+		GFF2531	0.39	-0.6
2,548,675	+		GFF2531	0.39	-0.0
2,548,698	+		GFF2531	0.43	+1.0
2,548,698	+		GFF2531	0.43	-0.7
2,548,698	+		GFF2531	0.43	-0.9
2,548,698	+		GFF2531	0.43	+1.3
2,548,698	+		GFF2531	0.43	+0.9
2,548,698	+		GFF2531	0.43	+0.7
2,548,706	-		GFF2531	0.45	-0.6
2,548,706	-		GFF2531	0.45	-0.7
2,548,723	-		GFF2531	0.49	-1.3
2,548,727	+		GFF2531	0.49	-2.3
2,548,734	-		GFF2531	0.51	+0.7
2,548,734	-		GFF2531	0.51	+0.5
2,548,735	-		GFF2531	0.51	-0.6
2,548,737	+		GFF2531	0.51	+0.7
2,548,740	-		GFF2531	0.52	-1.3
2,548,844	-		GFF2531	0.73	-1.8
2,548,844	-		GFF2531	0.73	-1.3
2,548,868	+		GFF2531	0.78	-1.0
2,548,869	-		GFF2531	0.79	+0.1
2,548,869	-		GFF2531	0.79	-1.6
2,548,874	-		GFF2531	0.80	-0.4
2,548,876	-		GFF2531	0.80	-0.9
2,548,876	-		GFF2531	0.80	-1.6
2,548,876	-		GFF2531	0.80	+0.3
2,548,885	-		GFF2531	0.82	+0.2
2,548,901	+		GFF2531	0.85	-0.2
2,548,909	-		GFF2531	0.87	-0.3
2,548,923	+		GFF2531	0.90	-2.2
2,548,931	-				+1.2
2,548,931	-				+0.6
2,548,936	+				+0.8
2,548,937	+				+0.1
2,548,937	+				-0.6
2,548,937	+				+0.4
2,548,937	+				-0.1
2,548,937	+				-1.3
2,548,937	+				-0.5
2,548,937	+				-0.7
2,548,937	+				-0.0
2,548,937	+				+0.3
2,548,937	+				-1.0
2,548,937	+				+0.1
2,548,937	+				-1.6
2,548,937	+				-0.6
2,548,937	+				+0.3
2,548,937	+				-1.0
2,548,937	+				-0.2
2,548,937	+				-0.2
2,548,937	+				+0.6
2,548,937	+				-0.5
2,548,937	+				+0.1
2,548,940	-				+1.0
2,548,945	-				+1.3
2,548,945	-				-0.7
2,548,945	-				+0.0
2,548,945	-				+0.3
2,548,945	-				+0.0
2,548,945	-				-0.7
2,548,945	-				-1.1
2,548,945	-				-1.3
2,548,945	-				+0.7
2,548,945	-				-0.6
2,548,945	-				-0.7
2,548,945	-				-0.6
2,548,945	-				-0.8
2,548,945	-				+0.0
2,548,945	-				-0.0
2,548,945	-				-0.6
2,548,945	-				-1.3
2,548,945	-				-0.9
2,548,945	-				-0.1
2,548,945	-				-1.7
2,548,945	-				-0.0
2,548,945	-				-0.2
2,548,945	-				-0.5
2,548,945	-				-1.0
2,548,945	-				+0.3
2,548,945	-				-0.8
2,548,945	-				-0.3
2,548,945	-				+0.8
2,548,945	-				+1.4
2,548,945	-				-1.2
2,548,945	-				-1.1
2,548,945	-				-0.3
2,548,945	-				-0.4
2,548,970	+				-0.3
2,548,970	+				-0.5
2,548,978	-				-0.6
2,548,978	-				-0.5
2,549,002	-				-1.5
2,549,014	+				+0.7
2,549,022	+				+0.3
2,549,026	+				-1.3
2,549,026	+				-0.4
2,549,026	+				-1.7
2,549,034	-				+0.0
2,549,034	-				-1.1
2,549,037	+				-1.9
2,549,042	+				+0.3
2,549,042	+				-0.5
2,549,047	+				+1.7
2,549,052	+		GFF2532	0.10	+0.5
2,549,052	+		GFF2532	0.10	-0.3
2,549,055	-		GFF2532	0.11	+0.2
2,549,060	-		GFF2532	0.11	-0.7
2,549,060	-		GFF2532	0.11	-1.4
2,549,060	-		GFF2532	0.11	-0.2
2,549,060	-		GFF2532	0.11	-1.0
2,549,067	+		GFF2532	0.12	+0.5
2,549,068	+		GFF2532	0.12	-0.9
2,549,068	+		GFF2532	0.12	+0.5
2,549,068	+		GFF2532	0.12	+1.3
2,549,068	+		GFF2532	0.12	+0.1
2,549,076	-		GFF2532	0.13	-0.5
2,549,076	-		GFF2532	0.13	-1.6
2,549,076	-		GFF2532	0.13	-0.5
2,549,076	-		GFF2532	0.13	+0.7
2,549,076	-		GFF2532	0.13	-1.0
2,549,076	-		GFF2532	0.13	+0.0
2,549,081	+		GFF2532	0.14	+0.4
2,549,081	-		GFF2532	0.14	-0.6
2,549,089	-		GFF2532	0.15	+0.2
2,549,093	-		GFF2532	0.15	+1.0
2,549,095	-		GFF2532	0.16	-0.1
2,549,098	-		GFF2532	0.16	-0.8
2,549,133	+		GFF2532	0.20	-0.7
2,549,135	-		GFF2532	0.20	-0.7
2,549,135	-		GFF2532	0.20	+1.6
2,549,135	-		GFF2532	0.20	+0.5
2,549,141	-		GFF2532	0.21	-0.9
2,549,141	-		GFF2532	0.21	-1.3
2,549,142	-		GFF2532	0.21	+1.6
2,549,162	+		GFF2532	0.24	+0.4
2,549,167	+		GFF2532	0.24	-0.5
2,549,170	-		GFF2532	0.25	+0.8
2,549,180	-		GFF2532	0.26	-0.7
2,549,180	-		GFF2532	0.26	-2.2
2,549,193	+		GFF2532	0.28	-1.0
2,549,198	+		GFF2532	0.28	-0.4
2,549,198	+		GFF2532	0.28	-0.5
2,549,213	+		GFF2532	0.30	+0.4
2,549,218	+		GFF2532	0.31	-0.3
2,549,218	+		GFF2532	0.31	-1.8
2,549,223	+		GFF2532	0.31	+0.4
2,549,231	-		GFF2532	0.32	-0.6
2,549,244	-		GFF2532	0.34	+0.7
2,549,286	+		GFF2532	0.39	+1.5
2,549,289	-		GFF2532	0.40	-0.7
2,549,291	+		GFF2532	0.40	-0.5
2,549,291	+		GFF2532	0.40	+0.6
2,549,296	+		GFF2532	0.40	-1.7
2,549,301	+		GFF2532	0.41	+0.8
2,549,314	-		GFF2532	0.43	+2.0
2,549,316	-		GFF2532	0.43	-0.1
2,549,370	-		GFF2532	0.50	+0.0
2,549,419	+		GFF2532	0.56	-0.8
2,549,441	+		GFF2532	0.58	-0.3
2,549,449	-		GFF2532	0.59	+0.2
2,549,451	+		GFF2532	0.60	+0.0
2,549,477	+		GFF2532	0.63	-0.7
2,549,485	-		GFF2532	0.64	-2.0
2,549,485	-		GFF2532	0.64	-1.3
2,549,496	+		GFF2532	0.65	-0.6
2,549,508	+		GFF2532	0.67	-0.3
2,549,508	+		GFF2532	0.67	-0.1
2,549,526	-		GFF2532	0.69	-0.5
2,549,537	+		GFF2532	0.70	+0.7
2,549,540	-		GFF2532	0.70	-1.3
2,549,545	-		GFF2532	0.71	-2.8
2,549,620	-		GFF2532	0.80	+1.3
2,549,634	+		GFF2532	0.82	-2.4
2,549,661	+		GFF2532	0.85	-1.7
2,549,669	-		GFF2532	0.86	-0.7
2,549,669	-		GFF2532	0.86	+0.3
2,549,687	+		GFF2532	0.89	+0.3
2,549,698	+				+0.4
2,549,700	-				-1.5
2,549,713	-				-0.7
2,549,713	-				-1.8
2,549,733	+				-1.4
2,549,768	-				+0.3
2,549,771	+				-0.8
2,549,771	+				+0.7
2,549,784	+				-1.7
2,549,791	+				+0.7
2,549,797	+				-2.3
2,549,799	+				-0.1
2,549,801	+				-1.0
2,549,801	+				+1.0
2,549,806	+				-0.6
2,549,827	+				-1.3
2,549,828	+				+0.1
2,549,828	+				-0.9
2,549,834	+		GFF2533	0.11	+1.2
2,549,835	-		GFF2533	0.11	-1.0
2,549,836	-		GFF2533	0.12	-0.5
2,549,850	-		GFF2533	0.17	+1.2
2,549,850	-		GFF2533	0.17	-0.6
2,549,901	-		GFF2533	0.37	-0.4
2,549,914	-		GFF2533	0.42	-0.3
2,549,914	-		GFF2533	0.42	-1.0
2,549,916	-		GFF2533	0.43	-0.8
2,549,934	-		GFF2533	0.50	-0.5