Strain Fitness in Sphingobium sp. HT1-2 around GFF2501

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,523,746	+		GFF2500	0.13	-0.4
2,523,754	-		GFF2500	0.14	+1.0
2,523,802	+		GFF2500	0.19	-0.2
2,523,810	-		GFF2500	0.19	-0.2
2,523,810	-		GFF2500	0.19	-0.3
2,523,883	+		GFF2500	0.27	-0.4
2,523,889	-		GFF2500	0.27	-1.0
2,523,891	-		GFF2500	0.27	-0.5
2,523,894	+		GFF2500	0.28	+2.1
2,523,902	-		GFF2500	0.29	+0.9
2,523,904	-		GFF2500	0.29	-0.3
2,523,923	+		GFF2500	0.31	-0.3
2,523,923	+		GFF2500	0.31	-0.6
2,523,923	-		GFF2500	0.31	-0.2
2,523,926	+		GFF2500	0.31	-0.0
2,523,934	-		GFF2500	0.32	-0.9
2,523,935	-		GFF2500	0.32	+0.5
2,523,977	-		GFF2500	0.36	-0.4
2,523,987	+		GFF2500	0.37	+0.3
2,524,008	-		GFF2500	0.39	-1.7
2,524,074	+		GFF2500	0.46	+0.5
2,524,087	+		GFF2500	0.47	-0.1
2,524,100	-		GFF2500	0.48	+1.6
2,524,101	+		GFF2500	0.48	+0.8
2,524,134	+		GFF2500	0.52	-0.8
2,524,144	-		GFF2500	0.53	+0.1
2,524,148	-		GFF2500	0.53	+0.1
2,524,150	+		GFF2500	0.53	+1.0
2,524,150	+		GFF2500	0.53	+0.4
2,524,150	+		GFF2500	0.53	+0.9
2,524,150	+		GFF2500	0.53	+1.1
2,524,150	+		GFF2500	0.53	-0.2
2,524,156	-		GFF2500	0.54	-0.4
2,524,158	-		GFF2500	0.54	-1.5
2,524,158	-		GFF2500	0.54	-0.2
2,524,161	+		GFF2500	0.54	-0.4
2,524,161	+		GFF2500	0.54	+0.5
2,524,161	+		GFF2500	0.54	-1.7
2,524,161	+		GFF2500	0.54	-0.7
2,524,169	-		GFF2500	0.55	+0.8
2,524,169	-		GFF2500	0.55	-1.8
2,524,195	-		GFF2500	0.58	+0.1
2,524,211	+		GFF2500	0.59	-1.4
2,524,213	+		GFF2500	0.60	-1.5
2,524,219	-		GFF2500	0.60	-0.7
2,524,221	-		GFF2500	0.60	-1.7
2,524,221	-		GFF2500	0.60	-2.5
2,524,233	-		GFF2500	0.62	+1.2
2,524,240	+		GFF2500	0.62	-1.5
2,524,256	+		GFF2500	0.64	+0.3
2,524,256	+		GFF2500	0.64	+0.4
2,524,295	+		GFF2500	0.68	-0.3
2,524,303	-		GFF2500	0.69	-0.1
2,524,304	-		GFF2500	0.69	-0.3
2,524,310	+		GFF2500	0.69	-0.6
2,524,318	-		GFF2500	0.70	-1.3
2,524,318	-		GFF2500	0.70	-1.4
2,524,318	-		GFF2500	0.70	+0.3
2,524,320	+		GFF2500	0.70	-0.3
2,524,320	+		GFF2500	0.70	-0.4
2,524,320	+		GFF2500	0.70	-1.3
2,524,325	+		GFF2500	0.71	+0.1
2,524,330	+		GFF2500	0.71	-0.7
2,524,330	+		GFF2500	0.71	-0.1
2,524,333	-		GFF2500	0.72	-0.6
2,524,333	-		GFF2500	0.72	+0.3
2,524,335	+		GFF2500	0.72	-0.5
2,524,338	-		GFF2500	0.72	+2.0
2,524,338	-		GFF2500	0.72	-1.3
2,524,348	+		GFF2500	0.73	-0.9
2,524,357	+		GFF2500	0.74	-1.5
2,524,357	+		GFF2500	0.74	-1.5
2,524,358	+		GFF2500	0.74	-0.8
2,524,360	+		GFF2500	0.74	-1.3
2,524,376	+		GFF2500	0.76	-0.1
2,524,384	-		GFF2500	0.77	-0.4
2,524,406	-		GFF2500	0.79	-0.2
2,524,408	+		GFF2500	0.79	+0.2
2,524,408	+		GFF2500	0.79	-1.1
2,524,413	+		GFF2500	0.80	-1.6
2,524,421	-		GFF2500	0.80	+0.2
2,524,436	+		GFF2500	0.82	-0.6
2,524,441	+		GFF2500	0.82	-1.6
2,524,444	-		GFF2500	0.83	-0.9
2,524,444	-		GFF2500	0.83	-0.5
2,524,444	-		GFF2500	0.83	-0.0
2,524,444	-		GFF2500	0.83	-0.9
2,524,459	-		GFF2500	0.84	-0.4
2,524,459	-		GFF2500	0.84	+1.3
2,524,493	+		GFF2500	0.88	-1.4
2,524,518	-				-0.4
2,524,518	-				+0.0
2,524,526	-				+0.4
2,524,552	+				-0.4
2,524,552	+				+0.7
2,524,552	-				-0.3
2,524,561	-				-1.4
2,524,567	+				+1.0
2,524,570	-				+0.4
2,524,572	+				-0.2
2,524,572	+				+0.6
2,524,572	+				-0.9
2,524,572	+				+0.6
2,524,575	-				-2.5
2,524,575	-				-1.1
2,524,580	-				-1.7
2,524,587	+				-0.7
2,524,587	+				+1.1
2,524,587	+				-1.7
2,524,589	+				-2.0
2,524,589	+				+0.6
2,524,590	-				+1.0
2,524,595	-				-0.4
2,524,595	-				-1.9
2,524,597	-				-0.9
2,524,599	+				+0.2
2,524,599	+				-0.6
2,524,599	+				-1.1
2,524,618	+				+0.8
2,524,619	+				-0.9
2,524,621	-				-0.3
2,524,626	+				-1.9
2,524,626	+				-1.1
2,524,634	-				-2.3
2,524,653	+				-2.0
2,524,661	-				-0.3
2,524,661	-				-0.3
2,524,663	+				-0.9
2,524,666	-				+0.3
2,524,671	+				-0.9
2,524,679	-				-1.0
2,524,679	-				-1.8
2,524,679	-				-0.6
2,524,731	+				-0.7
2,524,731	+				-0.6
2,524,736	+				-0.8
2,524,736	+				-1.1
2,524,739	-				+1.1
2,524,739	-				+0.2
2,524,739	-				-1.7
2,524,752	-				-0.1
2,524,754	+				+0.8
2,524,754	+				+0.9
2,524,754	+				-0.3
2,524,754	+				+0.6
2,524,759	+				+0.2
2,524,762	-				-1.1
2,524,762	-				+0.5
2,524,762	-				+0.6
2,524,765	+				+0.1
2,524,767	-				-1.9
2,524,798	-				+0.7
2,524,815	-				-1.0
2,524,844	-				-0.5
2,524,850	+				-0.3
2,524,856	+				+0.3
2,524,856	+				+0.3
2,524,856	+				-1.0
2,524,859	-				+0.1
2,524,861	+				+0.6
2,524,861	+				-0.7
2,524,863	-				+0.8
2,524,864	-				+0.2
2,524,864	-				-0.6
2,524,864	-				-1.6
2,524,904	+		GFF2501	0.13	+0.6
2,524,911	+		GFF2501	0.13	-0.8
2,524,911	+		GFF2501	0.13	-0.9
2,524,911	+		GFF2501	0.13	-2.0
2,524,911	+		GFF2501	0.13	+0.2
2,524,919	-		GFF2501	0.14	-1.2
2,524,919	-		GFF2501	0.14	-0.3
2,524,919	-		GFF2501	0.14	+0.2
2,524,919	-		GFF2501	0.14	-0.6
2,524,931	-		GFF2501	0.15	-1.0
2,524,932	-		GFF2501	0.15	+0.5
2,524,954	-		GFF2501	0.17	-0.1
2,524,968	+		GFF2501	0.18	-0.7
2,524,970	+		GFF2501	0.18	-0.4
2,524,970	+		GFF2501	0.18	-1.7
2,524,970	+		GFF2501	0.18	+0.1
2,524,970	+		GFF2501	0.18	-2.6
2,524,970	+		GFF2501	0.18	+0.7
2,524,970	+		GFF2501	0.18	-1.2
2,524,970	+		GFF2501	0.18	+0.4
2,524,978	+		GFF2501	0.18	-0.1
2,524,978	+		GFF2501	0.18	-0.9
2,524,978	+		GFF2501	0.18	-1.7
2,524,978	-		GFF2501	0.18	+0.7
2,524,986	-		GFF2501	0.19	+0.1
2,524,993	+		GFF2501	0.19	+0.4
2,524,998	+		GFF2501	0.20	-0.2
2,524,998	+		GFF2501	0.20	-1.6
2,524,998	+		GFF2501	0.20	-1.6
2,524,998	+		GFF2501	0.20	-2.1
2,525,001	-		GFF2501	0.20	-2.2
2,525,001	-		GFF2501	0.20	+1.3
2,525,006	-		GFF2501	0.20	+0.3
2,525,006	-		GFF2501	0.20	+1.7
2,525,006	-		GFF2501	0.20	+1.3
2,525,006	-		GFF2501	0.20	-0.6
2,525,006	-		GFF2501	0.20	-3.3
2,525,017	+		GFF2501	0.21	-1.8
2,525,017	+		GFF2501	0.21	-1.2
2,525,019	+		GFF2501	0.21	+0.4
2,525,019	+		GFF2501	0.21	-0.2
2,525,019	+		GFF2501	0.21	-0.9
2,525,019	+		GFF2501	0.21	+0.7
2,525,025	-		GFF2501	0.22	-1.1
2,525,025	-		GFF2501	0.22	+2.0
2,525,025	-		GFF2501	0.22	-0.8
2,525,027	-		GFF2501	0.22	+0.8
2,525,027	-		GFF2501	0.22	+0.1
2,525,027	-		GFF2501	0.22	-0.7
2,525,027	-		GFF2501	0.22	-1.2
2,525,027	-		GFF2501	0.22	-1.9
2,525,037	-		GFF2501	0.23	+0.4
2,525,045	+		GFF2501	0.23	+0.7
2,525,045	+		GFF2501	0.23	-0.7
2,525,046	-		GFF2501	0.23	-1.6
2,525,053	-		GFF2501	0.24	+0.4
2,525,053	-		GFF2501	0.24	+0.3
2,525,114	-		GFF2501	0.29	+0.4
2,525,139	-		GFF2501	0.30	-1.6
2,525,147	-		GFF2501	0.31	-2.2
2,525,147	-		GFF2501	0.31	+0.2
2,525,169	+		GFF2501	0.33	+0.6
2,525,182	-		GFF2501	0.34	-0.3
2,525,182	-		GFF2501	0.34	-1.7
2,525,216	+		GFF2501	0.36	-0.9
2,525,224	-		GFF2501	0.37	-0.9
2,525,224	-		GFF2501	0.37	-1.9
2,525,228	+		GFF2501	0.37	+0.9
2,525,229	-		GFF2501	0.37	-0.7
2,525,254	+		GFF2501	0.39	-1.3
2,525,278	+		GFF2501	0.41	-1.7
2,525,278	+		GFF2501	0.41	+1.6
2,525,286	-		GFF2501	0.41	-0.8
2,525,333	-		GFF2501	0.45	-0.6
2,525,335	+		GFF2501	0.45	-0.9
2,525,335	+		GFF2501	0.45	+0.6
2,525,343	-		GFF2501	0.46	-1.2
2,525,343	-		GFF2501	0.46	-1.2
2,525,343	-		GFF2501	0.46	+0.1
2,525,343	-		GFF2501	0.46	-1.0
2,525,343	-		GFF2501	0.46	-0.4
2,525,346	+		GFF2501	0.46	+0.7
2,525,393	+		GFF2501	0.49	+1.3
2,525,393	+		GFF2501	0.49	-2.2
2,525,394	-		GFF2501	0.50	-0.0
2,525,396	-		GFF2501	0.50	+0.3
2,525,401	-		GFF2501	0.50	-1.9
2,525,401	-		GFF2501	0.50	+0.9
2,525,404	+		GFF2501	0.50	-0.6
2,525,416	+		GFF2501	0.51	+0.1
2,525,426	-		GFF2501	0.52	-0.3
2,525,431	+		GFF2501	0.52	+0.1
2,525,431	+		GFF2501	0.52	-1.2
2,525,431	+		GFF2501	0.52	-0.1
2,525,431	+		GFF2501	0.52	+0.7
2,525,431	+		GFF2501	0.52	-1.2
2,525,431	+		GFF2501	0.52	-0.2
2,525,431	+		GFF2501	0.52	+0.4
2,525,435	+		GFF2501	0.53	-1.3
2,525,439	-		GFF2501	0.53	-1.0
2,525,439	-		GFF2501	0.53	-2.1
2,525,439	-		GFF2501	0.53	+0.5
2,525,439	-		GFF2501	0.53	-0.8
2,525,439	-		GFF2501	0.53	-1.2
2,525,439	-		GFF2501	0.53	-0.9
2,525,439	-		GFF2501	0.53	-1.4
2,525,439	-		GFF2501	0.53	-1.6
2,525,439	-		GFF2501	0.53	-1.2
2,525,439	-		GFF2501	0.53	+1.4
2,525,455	+		GFF2501	0.54	+0.6
2,525,467	+		GFF2501	0.55	+0.7
2,525,467	+		GFF2501	0.55	+0.7
2,525,502	-		GFF2501	0.58	-0.6
2,525,512	+		GFF2501	0.58	-0.3
2,525,514	+		GFF2501	0.59	-0.9
2,525,520	-		GFF2501	0.59	+1.7
2,525,528	+		GFF2501	0.60	-0.6
2,525,536	-		GFF2501	0.60	+0.1
2,525,536	-		GFF2501	0.60	-1.0
2,525,567	+		GFF2501	0.62	-0.4
2,525,577	+		GFF2501	0.63	-0.7
2,525,580	-		GFF2501	0.63	-1.5
2,525,587	+		GFF2501	0.64	+0.2
2,525,593	+		GFF2501	0.64	-1.8
2,525,594	+		GFF2501	0.64	-0.7
2,525,594	+		GFF2501	0.64	+0.9
2,525,595	-		GFF2501	0.65	-1.2
2,525,603	+		GFF2501	0.65	-0.7
2,525,656	+		GFF2501	0.69	-0.7
2,525,667	+		GFF2501	0.70	-1.0
2,525,674	+		GFF2501	0.70	-1.9
2,525,675	-		GFF2501	0.71	-0.7
2,525,675	-		GFF2501	0.71	-1.7
2,525,728	+		GFF2501	0.75	-1.4
2,525,742	-		GFF2501	0.76	-0.2
2,525,758	-		GFF2501	0.77	+1.6
2,525,758	-		GFF2501	0.77	-2.2
2,525,778	-		GFF2501	0.78	+0.6
2,525,811	+		GFF2501	0.81	+0.0
2,525,816	-		GFF2501	0.81	+0.6
2,525,832	+		GFF2501	0.82	-0.6
2,525,832	+		GFF2501	0.82	-0.0
2,525,832	+		GFF2501	0.82	-0.6
2,525,835	-		GFF2501	0.83	-2.5
2,525,844	+		GFF2501	0.83	-0.7
2,525,849	+		GFF2501	0.84	-0.4
2,525,861	-		GFF2501	0.84	+0.1
2,525,874	+		GFF2501	0.85	-1.1
2,525,887	+		GFF2501	0.86	-0.9
2,525,887	-		GFF2501	0.86	-1.1
2,525,921	-		GFF2501	0.89	-0.2
2,525,962	+				+0.6
2,526,027	-				+0.9
2,526,053	+				-0.8
2,526,060	+				-1.9
2,526,060	+				-0.6
2,526,060	+				+1.1
2,526,062	+				+0.4
2,526,062	+				+1.3
2,526,068	-				-1.7
2,526,068	-				-1.2
2,526,091	+				-0.0
2,526,099	-				-2.4
2,526,101	+				+0.2
2,526,101	+				+0.6
2,526,104	-				-1.5
2,526,109	-				-1.0
2,526,113	+				-0.7
2,526,119	-				-0.5
2,526,121	-				+0.2
2,526,121	-				-0.8
2,526,128	+				+0.2
2,526,131	-				+0.4
2,526,133	+				-1.3
2,526,141	-		GFF2502	0.11	+0.6
2,526,148	-		GFF2502	0.12	-1.6
2,526,148	-		GFF2502	0.12	-0.6
2,526,161	+		GFF2502	0.14	+0.1
2,526,174	+		GFF2502	0.15	+0.5
2,526,193	+		GFF2502	0.18	+0.5
2,526,201	-		GFF2502	0.19	+0.5
2,526,201	-		GFF2502	0.19	-0.9
2,526,236	+		GFF2502	0.24	-0.2
2,526,269	+		GFF2502	0.29	-0.3
2,526,271	+		GFF2502	0.29	-0.1
2,526,277	-		GFF2502	0.30	-0.2
2,526,277	-		GFF2502	0.30	-1.8
2,526,279	+		GFF2502	0.30	+0.2
2,526,279	-		GFF2502	0.30	-0.2
2,526,279	-		GFF2502	0.30	+0.4
2,526,290	+		GFF2502	0.32	-1.0
2,526,307	+		GFF2502	0.34	-0.3
2,526,352	+		GFF2502	0.41	-0.4
2,526,403	-		GFF2502	0.48	-2.0
2,526,416	-		GFF2502	0.50	-0.7
2,526,418	+		GFF2502	0.50	-0.5
2,526,418	+		GFF2502	0.50	+0.2
2,526,418	+		GFF2502	0.50	-1.1
2,526,418	+		GFF2502	0.50	-0.6
2,526,426	-		GFF2502	0.51	+0.7
2,526,426	-		GFF2502	0.51	-0.6
2,526,426	-		GFF2502	0.51	-1.3
2,526,426	-		GFF2502	0.51	+1.7
2,526,426	-		GFF2502	0.51	+0.7
2,526,426	-		GFF2502	0.51	-1.2
2,526,464	+		GFF2502	0.56	-0.5
2,526,472	-		GFF2502	0.57	-0.6
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