Strain Fitness in Sphingobium sp. HT1-2 around GFF2390

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,411,071	+		GFF2389	0.44	-1.2
2,411,079	-		GFF2389	0.44	-0.3
2,411,085	-		GFF2389	0.45	+0.6
2,411,092	-		GFF2389	0.45	-0.3
2,411,138	+		GFF2389	0.48	-0.6
2,411,138	+		GFF2389	0.48	-0.0
2,411,138	+		GFF2389	0.48	-0.8
2,411,138	+		GFF2389	0.48	+0.2
2,411,138	+		GFF2389	0.48	-0.8
2,411,138	+		GFF2389	0.48	+1.0
2,411,138	+		GFF2389	0.48	+1.3
2,411,138	+		GFF2389	0.48	-0.3
2,411,138	+		GFF2389	0.48	-1.6
2,411,138	+		GFF2389	0.48	-0.3
2,411,138	+		GFF2389	0.48	+0.3
2,411,146	-		GFF2389	0.49	-0.6
2,411,146	-		GFF2389	0.49	+0.3
2,411,146	-		GFF2389	0.49	-0.3
2,411,146	-		GFF2389	0.49	-0.3
2,411,146	-		GFF2389	0.49	-1.1
2,411,146	-		GFF2389	0.49	+0.7
2,411,146	-		GFF2389	0.49	+0.9
2,411,148	+		GFF2389	0.49	+1.6
2,411,163	-		GFF2389	0.50	-0.5
2,411,234	+		GFF2389	0.54	-0.8
2,411,289	-		GFF2389	0.57	+0.5
2,411,289	-		GFF2389	0.57	+0.9
2,411,310	-		GFF2389	0.59	-0.5
2,411,371	-		GFF2389	0.63	-0.5
2,411,372	-		GFF2389	0.63	-1.8
2,411,434	-		GFF2389	0.67	+0.4
2,411,434	-		GFF2389	0.67	-1.0
2,411,437	+		GFF2389	0.67	-0.9
2,411,472	+		GFF2389	0.69	-1.4
2,411,511	+		GFF2389	0.71	+1.1
2,411,516	+		GFF2389	0.72	-1.5
2,411,516	+		GFF2389	0.72	+0.6
2,411,524	-		GFF2389	0.72	-0.3
2,411,538	-		GFF2389	0.73	-0.9
2,411,540	+		GFF2389	0.73	-0.5
2,411,545	+		GFF2389	0.73	+0.1
2,411,548	-		GFF2389	0.74	-0.0
2,411,548	-		GFF2389	0.74	+1.5
2,411,552	-		GFF2389	0.74	-0.6
2,411,553	-		GFF2389	0.74	-2.1
2,411,622	+		GFF2389	0.78	+0.9
2,411,628	-		GFF2389	0.79	-0.7
2,411,650	+		GFF2389	0.80	-1.1
2,411,664	+		GFF2389	0.81	-1.3
2,411,665	-		GFF2389	0.81	-1.7
2,411,779	+		GFF2389	0.88	+0.4
2,411,794	+		GFF2389	0.89	+0.0
2,411,794	+		GFF2389	0.89	+0.7
2,411,802	-		GFF2389	0.90	-0.6
2,411,815	+				+1.0
2,411,855	-				-1.1
2,411,881	+				-1.2
2,411,896	+				-0.1
2,411,898	+				-1.7
2,411,901	+				+0.9
2,411,906	-				+0.1
2,411,909	-				-0.7
2,411,916	-				-1.8
2,411,919	+				-0.3
2,411,943	-				+1.0
2,411,949	+				+1.9
2,411,949	+				+0.3
2,411,949	+				-1.5
2,411,954	+				-0.7
2,411,957	-				+0.7
2,411,964	+				-0.6
2,411,965	+				-0.7
2,411,972	-				-0.9
2,411,972	-				-1.6
2,411,973	-				-0.3
2,411,973	-				-0.3
2,411,973	-				-1.6
2,411,979	-				+0.1
2,411,996	+				-0.3
2,411,996	+				-0.3
2,411,999	-				+0.4
2,412,006	+				-1.2
2,412,006	+				-0.0
2,412,009	-				-0.9
2,412,014	-				-0.5
2,412,016	+				-0.6
2,412,024	-				+0.6
2,412,033	-				-1.0
2,412,033	-				-1.5
2,412,034	+				-0.5
2,412,034	+				-0.5
2,412,034	+				-0.5
2,412,042	-				+0.1
2,412,042	-				-0.9
2,412,044	+		GFF2390	0.10	+0.7
2,412,044	+		GFF2390	0.10	-1.0
2,412,044	+		GFF2390	0.10	-1.5
2,412,052	-		GFF2390	0.13	-0.2
2,412,071	+		GFF2390	0.18	-1.0
2,412,079	-		GFF2390	0.21	-0.6
2,412,079	-		GFF2390	0.21	-0.5
2,412,121	+		GFF2390	0.33	+0.2
2,412,131	-		GFF2390	0.36	+0.1
2,412,157	+		GFF2390	0.44	-1.1
2,412,165	+		GFF2390	0.46	+0.5
2,412,172	+		GFF2390	0.48	-0.4
2,412,172	+		GFF2390	0.48	+1.0
2,412,177	+		GFF2390	0.50	-0.3
2,412,185	-		GFF2390	0.52	+0.1
2,412,191	-		GFF2390	0.54	-0.5
2,412,200	+		GFF2390	0.56	+0.5
2,412,200	+		GFF2390	0.56	-0.0
2,412,200	+		GFF2390	0.56	-1.4
2,412,208	-		GFF2390	0.59	-0.0
2,412,208	-		GFF2390	0.59	-0.2
2,412,208	-		GFF2390	0.59	-1.3
2,412,219	+		GFF2390	0.62	+0.4
2,412,258	+		GFF2390	0.73	-0.5
2,412,266	-		GFF2390	0.76	-0.4
2,412,270	+		GFF2390	0.77	-0.4
2,412,396	-				-1.5
2,412,401	-				-0.6
2,412,420	+				+1.1
2,412,428	-				-1.9
2,412,450	+				+0.3
2,412,456	+				+0.5
2,412,457	-				+0.3
2,412,460	+				-0.1
2,412,460	+				+0.5
2,412,461	+				-0.0
2,412,468	-		GFF2391	0.10	-1.2
2,412,468	-		GFF2391	0.10	-0.7
2,412,470	+		GFF2391	0.11	+0.1
2,412,480	+		GFF2391	0.11	-0.6
2,412,484	-		GFF2391	0.12	-0.6
2,412,521	-		GFF2391	0.15	+0.3
2,412,531	+		GFF2391	0.16	-0.2
2,412,531	+		GFF2391	0.16	-0.8
2,412,531	+		GFF2391	0.16	+0.7
2,412,531	-		GFF2391	0.16	+1.2
2,412,539	-		GFF2391	0.17	-1.8
2,412,539	-		GFF2391	0.17	+0.3
2,412,539	-		GFF2391	0.17	-1.0
2,412,543	-		GFF2391	0.17	+0.5
2,412,555	+		GFF2391	0.18	+0.2
2,412,580	-		GFF2391	0.20	-0.2
2,412,594	+		GFF2391	0.21	-2.3
2,412,611	+		GFF2391	0.23	-1.5
2,412,619	-		GFF2391	0.24	+0.1
2,412,621	-		GFF2391	0.24	+1.0
2,412,623	+		GFF2391	0.24	-1.2
2,412,623	+		GFF2391	0.24	-0.2
2,412,623	+		GFF2391	0.24	+1.0
2,412,631	-		GFF2391	0.25	-1.3
2,412,631	-		GFF2391	0.25	-0.1
2,412,638	+		GFF2391	0.25	+0.5
2,412,638	+		GFF2391	0.25	+0.6
2,412,638	+		GFF2391	0.25	+1.3
2,412,646	-		GFF2391	0.26	+0.4
2,412,646	-		GFF2391	0.26	-0.1
2,412,646	-		GFF2391	0.26	-0.4
2,412,646	-		GFF2391	0.26	-1.1
2,412,651	-		GFF2391	0.26	-1.0
2,412,693	+		GFF2391	0.30	-1.5
2,412,701	-		GFF2391	0.31	-0.3
2,412,703	+		GFF2391	0.31	+0.8
2,412,703	+		GFF2391	0.31	-0.3
2,412,703	+		GFF2391	0.31	-1.3
2,412,703	+		GFF2391	0.31	-0.1
2,412,703	+		GFF2391	0.31	+0.1
2,412,709	-		GFF2391	0.31	+0.2
2,412,711	-		GFF2391	0.32	-2.2
2,412,711	-		GFF2391	0.32	+0.2
2,412,716	-		GFF2391	0.32	-0.5
2,412,716	-		GFF2391	0.32	+0.2
2,412,724	+		GFF2391	0.33	+0.4
2,412,724	+		GFF2391	0.33	-0.4
2,412,724	+		GFF2391	0.33	+0.5
2,412,732	-		GFF2391	0.33	-0.2
2,412,751	+		GFF2391	0.35	+0.4
2,412,780	-		GFF2391	0.38	+0.1
2,412,795	-		GFF2391	0.39	-1.7
2,412,800	-		GFF2391	0.39	-0.5
2,412,855	+		GFF2391	0.44	+0.5
2,412,873	-		GFF2391	0.46	+1.6
2,412,889	-		GFF2391	0.47	-1.7
2,412,954	+		GFF2391	0.53	+0.7
2,412,954	+		GFF2391	0.53	-0.1
2,412,954	+		GFF2391	0.53	-0.4
2,413,038	+		GFF2391	0.60	+0.0
2,413,041	-		GFF2391	0.60	+0.5
2,413,052	+		GFF2391	0.61	-0.6
2,413,064	+		GFF2391	0.62	-1.2
2,413,064	+		GFF2391	0.62	-1.7
2,413,072	-		GFF2391	0.63	+0.3
2,413,072	-		GFF2391	0.63	-1.0
2,413,072	-		GFF2391	0.63	+1.2
2,413,094	-		GFF2391	0.65	+0.3
2,413,103	+		GFF2391	0.66	+0.1
2,413,104	+		GFF2391	0.66	-0.7
2,413,113	+		GFF2391	0.67	-0.1
2,413,113	+		GFF2391	0.67	-2.1
2,413,121	-		GFF2391	0.67	+0.4
2,413,168	-		GFF2391	0.71	-0.3
2,413,192	+		GFF2391	0.74	+0.5
2,413,197	+		GFF2391	0.74	-1.0
2,413,200	-		GFF2391	0.74	-1.7
2,413,200	-		GFF2391	0.74	+0.5
2,413,202	+		GFF2391	0.74	+0.3
2,413,203	+		GFF2391	0.75	-1.8
2,413,205	-		GFF2391	0.75	+1.8
2,413,217	-		GFF2391	0.76	+0.4
2,413,228	+		GFF2391	0.77	-0.4
2,413,236	+		GFF2391	0.77	+0.3
2,413,241	-		GFF2391	0.78	-1.3
2,413,259	+		GFF2391	0.79	-0.5
2,413,259	+		GFF2391	0.79	-1.5
2,413,259	+		GFF2391	0.79	-0.3
2,413,264	+		GFF2391	0.80	-1.0
2,413,264	+		GFF2391	0.80	-0.8
2,413,267	-		GFF2391	0.80	-0.1
2,413,281	+		GFF2391	0.81	-0.3
2,413,281	+		GFF2391	0.81	-1.8
2,413,282	-		GFF2391	0.81	-0.4
2,413,286	+		GFF2391	0.82	-0.1
2,413,286	+		GFF2391	0.82	-0.3
2,413,289	-		GFF2391	0.82	-0.7
2,413,289	-		GFF2391	0.82	+0.8
2,413,289	-		GFF2391	0.82	+0.6
2,413,291	+		GFF2391	0.82	-1.1
2,413,291	+		GFF2391	0.82	-0.8
2,413,291	+		GFF2391	0.82	+0.9
2,413,291	+		GFF2391	0.82	-1.5
2,413,294	-		GFF2391	0.82	+0.6
2,413,296	+		GFF2391	0.83	+0.6
2,413,297	+		GFF2391	0.83	-1.0
2,413,299	-		GFF2391	0.83	+0.1
2,413,299	-		GFF2391	0.83	+0.3
2,413,299	-		GFF2391	0.83	+0.2
2,413,299	-		GFF2391	0.83	-1.8
2,413,299	-		GFF2391	0.83	+0.2
2,413,299	-		GFF2391	0.83	+0.3
2,413,304	-		GFF2391	0.83	-0.4
2,413,304	-		GFF2391	0.83	+0.3
2,413,305	-		GFF2391	0.83	-1.5
2,413,318	+		GFF2391	0.85	-0.6
2,413,325	-		GFF2391	0.85	-1.6
2,413,331	-		GFF2391	0.86	-1.4