Strain Fitness in Sphingobium sp. HT1-2 around GFF2309

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,333,178	-		GFF2308	0.28	-0.1
2,333,186	+		GFF2308	0.29	+1.8
2,333,191	+		GFF2308	0.29	+0.6
2,333,194	-		GFF2308	0.30	-0.5
2,333,205	+		GFF2308	0.30	-0.4
2,333,205	+		GFF2308	0.30	-0.5
2,333,213	-		GFF2308	0.31	-0.6
2,333,258	+		GFF2308	0.34	+1.0
2,333,258	+		GFF2308	0.34	+1.5
2,333,258	+		GFF2308	0.34	-0.7
2,333,258	+		GFF2308	0.34	+0.9
2,333,266	-		GFF2308	0.35	-0.9
2,333,273	+		GFF2308	0.35	-0.7
2,333,279	+		GFF2308	0.36	+0.6
2,333,281	-		GFF2308	0.36	-0.3
2,333,287	+		GFF2308	0.36	-0.6
2,333,287	+		GFF2308	0.36	-1.2
2,333,288	+		GFF2308	0.36	-0.5
2,333,294	+		GFF2308	0.37	+1.6
2,333,294	+		GFF2308	0.37	-0.5
2,333,295	-		GFF2308	0.37	-1.1
2,333,295	-		GFF2308	0.37	-0.4
2,333,317	-		GFF2308	0.38	-0.9
2,333,327	-		GFF2308	0.39	+0.2
2,333,332	-		GFF2308	0.39	-0.1
2,333,360	-		GFF2308	0.41	-1.7
2,333,363	+		GFF2308	0.42	+0.6
2,333,363	+		GFF2308	0.42	-1.1
2,333,367	-		GFF2308	0.42	+0.1
2,333,379	+		GFF2308	0.43	+0.5
2,333,394	+		GFF2308	0.44	-1.5
2,333,401	-		GFF2308	0.44	-0.7
2,333,404	+		GFF2308	0.45	+1.2
2,333,404	+		GFF2308	0.45	-0.0
2,333,404	+		GFF2308	0.45	+0.2
2,333,404	+		GFF2308	0.45	-0.2
2,333,411	+		GFF2308	0.45	-0.4
2,333,411	+		GFF2308	0.45	-1.1
2,333,411	+		GFF2308	0.45	-2.1
2,333,411	+		GFF2308	0.45	-1.2
2,333,411	+		GFF2308	0.45	+0.0
2,333,411	+		GFF2308	0.45	+0.1
2,333,411	+		GFF2308	0.45	-0.0
2,333,412	-		GFF2308	0.45	-0.7
2,333,419	-		GFF2308	0.46	-1.0
2,333,419	-		GFF2308	0.46	-1.1
2,333,419	-		GFF2308	0.46	-1.0
2,333,419	-		GFF2308	0.46	-0.6
2,333,419	-		GFF2308	0.46	-1.8
2,333,455	+		GFF2308	0.48	+0.2
2,333,455	+		GFF2308	0.48	-1.3
2,333,463	-		GFF2308	0.49	+0.3
2,333,463	-		GFF2308	0.49	+0.4
2,333,467	-		GFF2308	0.49	+0.1
2,333,498	+		GFF2308	0.51	-0.3
2,333,508	+		GFF2308	0.52	-0.4
2,333,512	-		GFF2308	0.52	-1.3
2,333,515	+		GFF2308	0.52	-1.8
2,333,516	-		GFF2308	0.53	-0.1
2,333,532	+		GFF2308	0.54	-0.4
2,333,558	+		GFF2308	0.56	+0.2
2,333,566	-		GFF2308	0.56	+0.4
2,333,566	-		GFF2308	0.56	+0.8
2,333,601	+		GFF2308	0.59	+0.2
2,333,601	+		GFF2308	0.59	-0.7
2,333,606	+		GFF2308	0.59	-1.4
2,333,606	+		GFF2308	0.59	-0.0
2,333,606	+		GFF2308	0.59	+0.2
2,333,609	-		GFF2308	0.59	+0.3
2,333,609	-		GFF2308	0.59	-0.9
2,333,609	-		GFF2308	0.59	-0.7
2,333,609	-		GFF2308	0.59	-0.4
2,333,614	-		GFF2308	0.60	-2.1
2,333,614	-		GFF2308	0.60	-0.5
2,333,614	-		GFF2308	0.60	+0.4
2,333,614	-		GFF2308	0.60	-0.6
2,333,655	-		GFF2308	0.62	-1.5
2,333,666	+		GFF2308	0.63	+1.8
2,333,674	-		GFF2308	0.64	-2.1
2,333,705	+		GFF2308	0.66	-0.3
2,333,729	+		GFF2308	0.68	-0.5
2,333,737	+		GFF2308	0.68	-0.7
2,333,737	-		GFF2308	0.68	-1.7
2,333,745	-		GFF2308	0.69	-0.1
2,333,747	+		GFF2308	0.69	-0.4
2,333,747	+		GFF2308	0.69	+0.8
2,333,750	-		GFF2308	0.69	+0.3
2,333,750	-		GFF2308	0.69	-0.7
2,333,750	-		GFF2308	0.69	-0.2
2,333,755	-		GFF2308	0.70	+0.1
2,333,755	-		GFF2308	0.70	-1.1
2,333,755	-		GFF2308	0.70	-1.1
2,333,757	-		GFF2308	0.70	-0.2
2,333,757	-		GFF2308	0.70	-1.4
2,333,757	-		GFF2308	0.70	-1.7
2,333,762	-		GFF2308	0.70	+0.6
2,333,811	+		GFF2308	0.74	-1.0
2,333,813	-		GFF2308	0.74	+0.1
2,333,818	-		GFF2308	0.74	+0.7
2,333,871	+		GFF2308	0.78	-1.3
2,333,873	+		GFF2308	0.78	-0.7
2,333,881	-		GFF2308	0.79	-0.5
2,333,896	+		GFF2308	0.80	-0.4
2,333,905	+		GFF2308	0.80	+1.1
2,333,923	+		GFF2308	0.82	-1.1
2,333,972	+		GFF2308	0.85	-0.7
2,333,980	-		GFF2308	0.86	+1.0
2,333,980	-		GFF2308	0.86	-1.1
2,333,987	-		GFF2308	0.86	-1.6
2,334,016	+		GFF2308	0.88	+0.6
2,334,024	-		GFF2308	0.89	-0.9
2,334,026	+		GFF2308	0.89	-1.6
2,334,042	+				-1.2
2,334,042	+				+0.5
2,334,043	+				-0.1
2,334,043	+				+0.1
2,334,050	-				-0.5
2,334,050	-				+0.2
2,334,071	+				-1.5
2,334,079	-				-1.2
2,334,079	-				-0.6
2,334,079	-				+0.2
2,334,084	+				-0.4
2,334,092	-				-0.1
2,334,098	-				-0.4
2,334,134	-				-0.9
2,334,150	+				-1.3
2,334,150	+				-0.3
2,334,153	-				-1.2
2,334,153	-				-0.9
2,334,153	-				-0.4
2,334,162	+				+2.5
2,334,176	+				-1.2
2,334,184	-				-0.8
2,334,239	+				-0.6
2,334,255	-				+0.1
2,334,255	-				+0.3
2,334,260	-				-1.2
2,334,312	+				+1.6
2,334,320	-				-0.5
2,334,394	-		GFF2309	0.14	-0.1
2,334,419	-		GFF2309	0.16	+0.1
2,334,485	+		GFF2309	0.20	+1.1
2,334,485	+		GFF2309	0.20	-0.3
2,334,485	+		GFF2309	0.20	-0.7
2,334,493	-		GFF2309	0.21	+0.3
2,334,524	+		GFF2309	0.23	-0.3
2,334,532	-		GFF2309	0.23	-0.9
2,334,585	+		GFF2309	0.27	-0.5
2,334,585	+		GFF2309	0.27	+1.0
2,334,593	-		GFF2309	0.27	-1.1
2,334,593	-		GFF2309	0.27	-0.7
2,334,593	-		GFF2309	0.27	+1.2
2,334,594	-		GFF2309	0.27	+0.1
2,334,629	-		GFF2309	0.29	-0.6
2,334,647	+		GFF2309	0.31	+0.7
2,334,647	+		GFF2309	0.31	+1.1
2,334,647	+		GFF2309	0.31	-0.3
2,334,655	-		GFF2309	0.31	-0.6
2,334,655	-		GFF2309	0.31	-0.9
2,334,678	+		GFF2309	0.33	-0.5
2,334,686	-		GFF2309	0.33	-1.1
2,334,709	-		GFF2309	0.35	-0.5
2,334,725	+		GFF2309	0.36	-0.5
2,334,730	+		GFF2309	0.36	-1.4
2,334,733	-		GFF2309	0.36	-0.5
2,334,738	-		GFF2309	0.37	+0.5
2,334,738	-		GFF2309	0.37	+0.5
2,334,757	-		GFF2309	0.38	-0.5
2,334,757	-		GFF2309	0.38	-1.1
2,334,779	+		GFF2309	0.39	-0.2
2,334,785	-		GFF2309	0.40	-0.8
2,334,798	+		GFF2309	0.41	+0.4
2,334,800	+		GFF2309	0.41	+0.1
2,334,800	+		GFF2309	0.41	-0.6
2,334,821	-		GFF2309	0.42	+0.7
2,334,865	+		GFF2309	0.45	+1.0
2,334,873	-		GFF2309	0.45	+0.2
2,334,873	-		GFF2309	0.45	-0.7
2,334,873	-		GFF2309	0.45	-0.6
2,334,873	-		GFF2309	0.45	+0.3
2,334,873	-		GFF2309	0.45	-0.5
2,334,881	-		GFF2309	0.46	+0.3
2,334,909	+		GFF2309	0.48	-0.7
2,334,914	+		GFF2309	0.48	-0.8
2,334,917	-		GFF2309	0.48	-0.5
2,334,917	-		GFF2309	0.48	+0.4
2,334,929	+		GFF2309	0.49	-0.2
2,334,935	-		GFF2309	0.49	+0.3
2,334,937	-		GFF2309	0.50	-0.7
2,334,937	-		GFF2309	0.50	-0.6
2,334,942	-		GFF2309	0.50	-0.3
2,334,960	-		GFF2309	0.51	-0.5
2,334,960	-		GFF2309	0.51	+1.0
2,334,972	+		GFF2309	0.52	-0.9
2,335,002	-		GFF2309	0.54	-0.3
2,335,067	+		GFF2309	0.58	+0.4
2,335,075	-		GFF2309	0.59	-1.3
2,335,075	-		GFF2309	0.59	-0.5
2,335,228	-		GFF2309	0.69	-0.3
2,335,244	-		GFF2309	0.70	-0.5
2,335,272	-		GFF2309	0.72	-0.5
2,335,282	-		GFF2309	0.72	-0.5
2,335,364	-		GFF2309	0.78	-0.6
2,335,369	-		GFF2309	0.78	-0.5
2,335,423	-		GFF2309	0.81	+0.5
2,335,493	+		GFF2309	0.86	-0.7
2,335,496	+		GFF2309	0.86	+0.8
2,335,499	-		GFF2309	0.86	-0.2
2,335,504	-		GFF2309	0.87	-1.1
2,335,535	+		GFF2309	0.89	-0.5
2,335,543	-		GFF2309	0.89	+0.0
2,335,638	+				+0.2
2,335,669	-				-1.0
2,335,674	-				-0.4
2,335,723	-				+1.1
2,335,742	+				+0.6
2,335,747	-				-1.0
2,335,755	+				+1.0
2,335,763	-				-1.0
2,335,770	+				-0.1
2,335,777	+				-0.4
2,335,778	-				+0.2
2,335,778	-				+0.9
2,335,778	-				-2.1
2,335,785	-				+0.4
2,335,794	+				-0.4
2,335,811	-				-0.3
2,335,811	-				-1.7
2,335,813	+				+0.5
2,335,820	+				-1.4
2,335,826	+				-1.7
2,335,834	-				-0.3
2,335,876	+				-0.8
2,335,881	+				+1.6
2,335,889	-				-1.0
2,335,893	+				+0.0
2,335,894	+				-1.7
2,335,894	+				-0.5
2,335,894	+				-0.7
2,335,894	+				+0.8
2,335,894	+				-0.1
2,335,894	+				-0.9
2,335,894	+				+0.0
2,335,902	-				-1.5
2,335,902	-				-1.7
2,335,902	-				-1.4
2,335,904	+				+0.0
2,335,904	+				+1.3
2,335,910	+				+0.6
2,335,926	-				-0.8
2,335,951	+		GFF2310	0.14	-0.5
2,335,960	+		GFF2310	0.15	+0.4
2,335,960	+		GFF2310	0.15	+0.2
2,335,968	-		GFF2310	0.17	+0.0
2,335,968	-		GFF2310	0.17	-0.7
2,335,970	+		GFF2310	0.17	-1.1
2,335,978	-		GFF2310	0.18	+0.5
2,335,992	-		GFF2310	0.21	-1.4
2,335,994	+		GFF2310	0.21	-0.3
2,336,002	-		GFF2310	0.22	+0.2
2,336,002	-		GFF2310	0.22	+0.4
2,336,002	-		GFF2310	0.22	-1.4
2,336,002	-		GFF2310	0.22	-0.4
2,336,007	-		GFF2310	0.23	+1.1
2,336,007	-		GFF2310	0.23	+0.1
2,336,051	-		GFF2310	0.31	+0.3
2,336,064	-		GFF2310	0.33	+1.3
2,336,102	+		GFF2310	0.40	-0.9
2,336,169	-		GFF2310	0.51	-1.7
2,336,177	+		GFF2310	0.53	-1.4
2,336,177	+		GFF2310	0.53	-1.1
2,336,177	+		GFF2310	0.53	+0.3
2,336,177	+		GFF2310	0.53	-0.3
2,336,177	+		GFF2310	0.53	+1.4
2,336,177	+		GFF2310	0.53	-0.7
2,336,177	+		GFF2310	0.53	-0.1
2,336,177	+		GFF2310	0.53	-0.1
2,336,177	+		GFF2310	0.53	+0.6
2,336,177	+		GFF2310	0.53	+0.1
2,336,177	+		GFF2310	0.53	+0.2
2,336,177	+		GFF2310	0.53	-1.7
2,336,177	+		GFF2310	0.53	-0.7
2,336,177	+		GFF2310	0.53	-0.8
2,336,177	+		GFF2310	0.53	+0.6
2,336,177	+		GFF2310	0.53	-1.6
2,336,177	+		GFF2310	0.53	+0.4
2,336,177	+		GFF2310	0.53	-1.4
2,336,177	+		GFF2310	0.53	+0.1
2,336,177	+		GFF2310	0.53	-0.7
2,336,183	-		GFF2310	0.54	-1.2
2,336,185	-		GFF2310	0.54	-0.5
2,336,185	-		GFF2310	0.54	+0.5
2,336,185	-		GFF2310	0.54	-0.6
2,336,185	-		GFF2310	0.54	-2.0
2,336,185	-		GFF2310	0.54	+0.5
2,336,185	-		GFF2310	0.54	+0.4
2,336,185	-		GFF2310	0.54	-0.7
2,336,185	-		GFF2310	0.54	-1.1
2,336,185	-		GFF2310	0.54	-1.6
2,336,185	-		GFF2310	0.54	+1.3
2,336,185	-		GFF2310	0.54	+0.2
2,336,250	+		GFF2310	0.65	-1.1
2,336,250	+		GFF2310	0.65	-1.0
2,336,252	+		GFF2310	0.66	-1.0
2,336,252	+		GFF2310	0.66	-0.1
2,336,256	-		GFF2310	0.66	-1.8
2,336,263	+		GFF2310	0.68	-1.5
2,336,271	-		GFF2310	0.69	+0.5
2,336,281	-		GFF2310	0.71	-1.1
2,336,310	-		GFF2310	0.76	-1.4
2,336,331	+		GFF2310	0.79	-2.5
2,336,331	+		GFF2310	0.79	+0.7
2,336,381	+		GFF2310	0.88	-1.8
2,336,400	-				+0.6
2,336,535	+				-0.8
2,336,543	-				-1.9
2,336,543	-				-0.9
2,336,543	-				-0.5
2,336,543	-				-2.1
2,336,545	+				+1.3
2,336,557	-				+0.7
2,336,557	-				-0.6
2,336,568	-		GFF2311	0.13	-0.8
2,336,581	+		GFF2311	0.17	-1.1
2,336,623	+		GFF2311	0.29	-1.4
2,336,685	-		GFF2311	0.47	-1.8