Strain Fitness in Sphingobium sp. HT1-2 around GFF2270

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,297,658	-		GFF2268	0.68	-1.4
2,297,715	+		GFF2268	0.82	-0.1
2,297,752	-				-0.2
2,297,754	+				+0.1
2,297,759	+				+0.4
2,297,759	+				-0.1
2,297,759	+				-1.1
2,297,759	+				-0.3
2,297,759	+				+0.3
2,297,759	+				+0.2
2,297,759	+				-0.6
2,297,759	+				-1.3
2,297,759	+				-0.8
2,297,767	-				+0.3
2,297,767	-				-0.8
2,297,767	-				-1.5
2,297,767	-				-1.7
2,297,767	-				-0.2
2,297,767	-				+1.2
2,297,767	-				-2.0
2,297,767	-				-0.5
2,297,767	-				-1.0
2,297,767	-				+0.2
2,297,767	-				-0.6
2,297,767	-				-0.3
2,297,767	-				+0.6
2,297,767	-				-1.6
2,297,823	-				-1.2
2,297,823	-				-1.4
2,297,823	-				-1.4
2,297,875	-		GFF2269	0.14	-0.7
2,297,916	+		GFF2269	0.18	-0.2
2,297,924	-		GFF2269	0.19	-0.7
2,297,929	-		GFF2269	0.20	-1.1
2,297,939	-		GFF2269	0.21	-0.3
2,297,959	-		GFF2269	0.23	-1.6
2,297,959	-		GFF2269	0.23	-0.5
2,297,976	-		GFF2269	0.25	-0.7
2,298,077	-		GFF2269	0.36	+0.0
2,298,123	+		GFF2269	0.41	-0.5
2,298,146	-		GFF2269	0.44	-1.8
2,298,151	-		GFF2269	0.44	+0.8
2,298,151	-		GFF2269	0.44	-1.1
2,298,151	-		GFF2269	0.44	-1.0
2,298,213	+		GFF2269	0.51	+0.5
2,298,304	-		GFF2269	0.61	+0.3
2,298,316	+		GFF2269	0.62	-1.4
2,298,316	+		GFF2269	0.62	-0.4
2,298,316	+		GFF2269	0.62	+0.3
2,298,316	+		GFF2269	0.62	-1.2
2,298,316	+		GFF2269	0.62	+0.0
2,298,316	+		GFF2269	0.62	-0.5
2,298,319	-		GFF2269	0.63	+0.5
2,298,324	-		GFF2269	0.63	-0.5
2,298,324	-		GFF2269	0.63	-2.9
2,298,324	-		GFF2269	0.63	-0.2
2,298,324	-		GFF2269	0.63	-0.4
2,298,324	-		GFF2269	0.63	-1.2
2,298,324	-		GFF2269	0.63	-1.5
2,298,326	+		GFF2269	0.64	-0.7
2,298,326	+		GFF2269	0.64	-0.9
2,298,327	+		GFF2269	0.64	-0.0
2,298,334	-		GFF2269	0.64	-0.4
2,298,334	-		GFF2269	0.64	-0.9
2,298,334	-		GFF2269	0.64	-0.4
2,298,334	-		GFF2269	0.64	+0.5
2,298,343	+		GFF2269	0.65	-0.8
2,298,343	+		GFF2269	0.65	-0.8
2,298,351	-		GFF2269	0.66	-0.5
2,298,356	-		GFF2269	0.67	-1.2
2,298,375	-		GFF2269	0.69	-0.6
2,298,375	-		GFF2269	0.69	-1.5
2,298,375	-		GFF2269	0.69	-1.1
2,298,375	-		GFF2269	0.69	-0.6
2,298,377	+		GFF2269	0.69	+1.2
2,298,382	+		GFF2269	0.70	+0.5
2,298,385	-		GFF2269	0.70	-1.5
2,298,387	+		GFF2269	0.70	-0.6
2,298,390	-		GFF2269	0.71	-0.8
2,298,426	+		GFF2269	0.75	-1.3
2,298,434	+		GFF2269	0.75	-0.3
2,298,434	+		GFF2269	0.75	-0.6
2,298,434	-		GFF2269	0.75	-0.5
2,298,444	-		GFF2269	0.77	-1.0
2,298,471	+		GFF2269	0.80	+0.5
2,298,471	+		GFF2269	0.80	-1.4
2,298,532	+		GFF2269	0.86	-1.8
2,298,540	+		GFF2269	0.87	-0.7
2,298,540	+		GFF2269	0.87	+1.8
2,298,540	-		GFF2269	0.87	-0.7
2,298,540	-		GFF2269	0.87	-0.4
2,298,540	-		GFF2269	0.87	+0.6
2,298,545	+		GFF2269	0.88	-1.2
2,298,545	+		GFF2269	0.88	+0.6
2,298,553	-		GFF2269	0.89	-0.7
2,298,553	-		GFF2269	0.89	-0.4
2,298,586	+				-1.4
2,298,602	+				+0.5
2,298,610	-				+0.6
2,298,613	+				-0.1
2,298,613	+				-1.7
2,298,613	+				-0.6
2,298,621	-				-2.2
2,298,621	-				-0.1
2,298,636	+				-1.0
2,298,638	+				-0.6
2,298,643	+				+1.3
2,298,643	+				+0.0
2,298,643	+				-1.7
2,298,646	-				-1.8
2,298,651	-				+0.3
2,298,651	-				+0.2
2,298,688	-				-1.8
2,298,688	-				-1.4
2,298,718	+				-1.2
2,298,726	+				-1.0
2,298,726	+				-0.8
2,298,727	+				-1.9
2,298,734	-				-0.8
2,298,734	-				-3.3
2,298,734	-				-1.0
2,298,742	+				-1.5
2,298,755	-		GFF2270	0.11	-1.1
2,298,764	+		GFF2270	0.12	-1.3
2,298,764	+		GFF2270	0.12	-1.0
2,298,809	+		GFF2270	0.17	-0.4
2,298,817	-		GFF2270	0.17	-1.6
2,298,820	+		GFF2270	0.18	-2.6
2,298,824	-		GFF2270	0.18	-1.6
2,298,824	-		GFF2270	0.18	-1.2
2,298,833	-		GFF2270	0.19	-0.5
2,298,869	+		GFF2270	0.23	-0.6
2,298,869	+		GFF2270	0.23	-0.4
2,298,877	-		GFF2270	0.24	-1.0
2,298,877	-		GFF2270	0.24	-0.6
2,298,904	-		GFF2270	0.27	-1.5
2,298,918	+		GFF2270	0.28	-0.6
2,298,923	+		GFF2270	0.29	-1.5
2,298,923	+		GFF2270	0.29	-1.7
2,298,923	+		GFF2270	0.29	-0.6
2,299,024	+		GFF2270	0.39	-0.3
2,299,045	-		GFF2270	0.41	-1.9
2,299,059	-		GFF2270	0.43	-1.7
2,299,090	+		GFF2270	0.46	-2.2
2,299,103	-		GFF2270	0.48	-1.2
2,299,122	+		GFF2270	0.50	-1.0
2,299,133	+		GFF2270	0.51	-1.1
2,299,164	+		GFF2270	0.54	-1.3
2,299,164	+		GFF2270	0.54	-1.2
2,299,164	+		GFF2270	0.54	-2.0
2,299,164	+		GFF2270	0.54	-1.3
2,299,164	+		GFF2270	0.54	-0.5
2,299,169	+		GFF2270	0.55	-1.2
2,299,172	-		GFF2270	0.55	-1.3
2,299,172	-		GFF2270	0.55	-1.2
2,299,172	-		GFF2270	0.55	-1.5
2,299,172	-		GFF2270	0.55	-0.7
2,299,212	+		GFF2270	0.59	-2.7
2,299,212	+		GFF2270	0.59	-1.8
2,299,212	+		GFF2270	0.59	-0.5
2,299,217	+		GFF2270	0.60	-1.2
2,299,217	+		GFF2270	0.60	-2.6
2,299,217	+		GFF2270	0.60	-0.9
2,299,220	-		GFF2270	0.60	-1.6
2,299,222	+		GFF2270	0.60	-0.8
2,299,225	-		GFF2270	0.61	-0.4
2,299,301	+		GFF2270	0.69	-0.8
2,299,330	+		GFF2270	0.72	-1.4
2,299,338	-		GFF2270	0.72	-0.4
2,299,364	-		GFF2270	0.75	-1.2
2,299,377	+		GFF2270	0.77	-1.7
2,299,404	+		GFF2270	0.79	-2.2
2,299,414	+		GFF2270	0.81	-1.0
2,299,414	+		GFF2270	0.81	-1.2
2,299,414	+		GFF2270	0.81	-1.5
2,299,414	+		GFF2270	0.81	-0.5
2,299,414	+		GFF2270	0.81	-1.3
2,299,414	+		GFF2270	0.81	-0.1
2,299,422	-		GFF2270	0.81	-1.9
2,299,422	-		GFF2270	0.81	-2.3
2,299,422	-		GFF2270	0.81	-1.3
2,299,422	-		GFF2270	0.81	-1.4
2,299,422	-		GFF2270	0.81	-0.5
2,299,422	-		GFF2270	0.81	-0.7
2,299,456	+		GFF2270	0.85	+0.1
2,299,460	+		GFF2270	0.85	-2.7
2,299,460	+		GFF2270	0.85	-0.6
2,299,460	+		GFF2270	0.85	-1.4
2,299,464	-		GFF2270	0.86	-1.0
2,299,468	-		GFF2270	0.86	-0.8
2,299,480	-		GFF2270	0.88	-0.8
2,299,489	-		GFF2270	0.88	-1.6
2,299,516	+				-1.7
2,299,524	-				-0.1
2,299,546	+				-1.4
2,299,591	+				+0.6
2,299,599	-				+0.3
2,299,599	-				-0.2
2,299,610	-				-1.1
2,299,614	-				-1.6
2,299,644	+				+1.0
2,299,652	-				-0.5
2,299,652	-				+0.8
2,299,678	+				-1.2
2,299,687	-				-0.8
2,299,688	+				-1.8
2,299,692	+		GFF2271	0.11	-2.0
2,299,700	-		GFF2271	0.15	-1.8
2,299,761	+		GFF2271	0.44	-0.2
2,299,761	+		GFF2271	0.44	+0.7
2,299,769	-		GFF2271	0.48	+0.3
2,299,790	+		GFF2271	0.58	-1.2
2,299,832	+		GFF2271	0.78	-0.4
2,299,833	-		GFF2271	0.78	+0.6
2,299,835	-		GFF2271	0.79	-0.0
2,299,839	+		GFF2271	0.81	+0.8
2,299,848	-		GFF2271	0.85	-2.0
2,299,857	-		GFF2271	0.90	-0.2
2,299,863	+				-0.7
2,299,871	-				-1.1
2,299,871	-				-1.4
2,299,871	-				-1.2
2,299,871	-				+1.1
2,299,873	+				+0.8
2,299,900	+				-0.3
2,299,900	+				+0.5
2,299,900	+				-0.9
2,299,904	+				-0.3
2,299,908	-				-0.5
2,299,919	-				-0.4
2,299,919	-				-1.5
2,299,922	+				-2.3
2,299,953	+				-0.7
2,299,964	+				-0.9
2,299,982	+				-1.3
2,300,001	-				+0.3
2,300,028	+				-0.5
2,300,036	-				-1.5
2,300,036	-				-1.1
2,300,039	+				-0.8
2,300,044	+				+1.6
2,300,044	+				-0.4
2,300,044	+				+0.8
2,300,045	+				-0.1
2,300,047	-				+0.4
2,300,047	-				-0.6
2,300,052	-				-0.8
2,300,052	-				-1.5
2,300,055	+				+1.2
2,300,069	+				-0.1
2,300,069	+				-1.4
2,300,070	+				-0.5
2,300,077	-				+0.5
2,300,090	-				+1.4
2,300,092	-				-1.4
2,300,100	+				-1.3
2,300,102	-				-1.3
2,300,113	-				-0.1
2,300,161	-		GFF2272	0.34	+0.9
2,300,173	+		GFF2272	0.41	-1.0
2,300,181	+		GFF2272	0.46	-1.7
2,300,181	-		GFF2272	0.46	-0.9
2,300,190	-		GFF2272	0.51	-0.5
2,300,192	+		GFF2272	0.52	-1.8
2,300,192	+		GFF2272	0.52	+1.3
2,300,192	+		GFF2272	0.52	-0.8
2,300,192	+		GFF2272	0.52	-0.3
2,300,192	+		GFF2272	0.52	-0.4
2,300,194	-		GFF2272	0.53	-0.1
2,300,197	+		GFF2272	0.55	-0.1
2,300,200	-		GFF2272	0.57	-0.2
2,300,200	-		GFF2272	0.57	-0.7
2,300,200	-		GFF2272	0.57	+0.2
2,300,205	-		GFF2272	0.60	-0.5
2,300,205	-		GFF2272	0.60	-1.0
2,300,221	+		GFF2272	0.69	+0.0
2,300,223	-		GFF2272	0.70	-1.5
2,300,239	+		GFF2272	0.80	-0.0
2,300,247	-		GFF2272	0.84	-0.7
2,300,249	-		GFF2272	0.85	-0.9
2,300,306	+				-0.4
2,300,319	+				-1.1
2,300,332	-				-0.4
2,300,332	-				+1.0
2,300,356	+				-0.6
2,300,373	+				-0.1
2,300,373	+				+0.0
2,300,394	+				-0.7
2,300,399	+				-1.6
2,300,407	-				+0.7
2,300,409	+				+1.3
2,300,409	+				+0.7
2,300,409	+				-0.5
2,300,409	+				+0.0
2,300,417	-				-0.5
2,300,417	-				-1.3
2,300,417	-				+0.8
2,300,417	-				+0.9
2,300,419	+				-0.9
2,300,435	+				-1.4
2,300,443	-				-0.7
2,300,462	+				+1.0
2,300,470	-		GFF2273	0.10	-1.4
2,300,494	+		GFF2273	0.12	+0.3
2,300,550	+		GFF2273	0.16	+0.4
2,300,551	+		GFF2273	0.16	+0.0
2,300,551	+		GFF2273	0.16	+0.2
2,300,560	+		GFF2273	0.17	-1.8
2,300,575	-		GFF2273	0.18	+0.9
2,300,578	+		GFF2273	0.18	-1.4
2,300,578	+		GFF2273	0.18	-1.2
2,300,586	-		GFF2273	0.19	+0.1
2,300,586	-		GFF2273	0.19	+0.5
2,300,586	-		GFF2273	0.19	-0.5
2,300,586	-		GFF2273	0.19	+0.4
2,300,586	-		GFF2273	0.19	-0.5