Strain Fitness in Sphingobium sp. HT1-2 around GFF2258

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,284,985	-		GFF2255	0.65	+1.1
2,284,987	+		GFF2255	0.65	+0.0
2,284,995	-		GFF2255	0.66	+0.5
2,284,995	-		GFF2255	0.66	-0.7
2,285,031	+		GFF2255	0.72	+0.2
2,285,046	-		GFF2255	0.75	-0.3
2,285,049	+		GFF2255	0.75	-1.4
2,285,059	+		GFF2255	0.77	-0.7
2,285,059	+		GFF2255	0.77	+1.5
2,285,082	+		GFF2255	0.81	-1.8
2,285,095	+		GFF2255	0.83	+0.1
2,285,103	-		GFF2255	0.84	-0.5
2,285,103	-		GFF2255	0.84	-1.0
2,285,136	-		GFF2255	0.90	-0.9
2,285,141	-				+1.2
2,285,141	-				-2.5
2,285,150	-				-0.2
2,285,155	+				+0.3
2,285,163	-				+0.5
2,285,258	+				+0.3
2,285,266	-		GFF2256	0.14	-2.5
2,285,282	+		GFF2256	0.26	+0.2
2,285,282	+		GFF2256	0.26	+0.2
2,285,290	-		GFF2256	0.32	-1.4
2,285,347	+		GFF2256	0.74	+0.7
2,285,347	+		GFF2256	0.74	-1.2
2,285,350	-		GFF2256	0.76	-1.2
2,285,370	+				+0.9
2,285,397	+				-1.1
2,285,403	+				-0.6
2,285,408	+				-0.7
2,285,428	+				-1.2
2,285,484	+		GFF2257	0.10	+0.4
2,285,485	+		GFF2257	0.10	-0.2
2,285,492	-		GFF2257	0.12	-1.2
2,285,493	-		GFF2257	0.12	-1.1
2,285,512	+		GFF2257	0.17	+0.6
2,285,512	+		GFF2257	0.17	+1.9
2,285,516	-		GFF2257	0.17	-0.9
2,285,517	+		GFF2257	0.18	-1.2
2,285,517	+		GFF2257	0.18	+0.2
2,285,525	-		GFF2257	0.20	+1.6
2,285,525	-		GFF2257	0.20	+0.5
2,285,525	-		GFF2257	0.20	+1.0
2,285,525	-		GFF2257	0.20	-0.4
2,285,525	-		GFF2257	0.20	+0.4
2,285,525	-		GFF2257	0.20	+0.2
2,285,533	-		GFF2257	0.21	+0.4
2,285,540	-		GFF2257	0.23	-0.7
2,285,583	-		GFF2257	0.33	+0.9
2,285,588	-		GFF2257	0.34	+0.2
2,285,591	+		GFF2257	0.34	+0.5
2,285,595	+		GFF2257	0.35	-1.5
2,285,598	-		GFF2257	0.36	-1.3
2,285,608	-		GFF2257	0.38	-0.7
2,285,616	+		GFF2257	0.40	+0.0
2,285,624	+		GFF2257	0.42	+0.7
2,285,624	+		GFF2257	0.42	+0.7
2,285,624	+		GFF2257	0.42	-0.6
2,285,632	-		GFF2257	0.44	-1.1
2,285,632	-		GFF2257	0.44	+1.3
2,285,632	-		GFF2257	0.44	-0.7
2,285,654	+		GFF2257	0.49	+0.4
2,285,663	-		GFF2257	0.51	+0.0
2,285,678	+		GFF2257	0.54	+0.5
2,285,678	+		GFF2257	0.54	+0.4
2,285,678	+		GFF2257	0.54	+0.4
2,285,678	+		GFF2257	0.54	+0.4
2,285,678	+		GFF2257	0.54	+0.0
2,285,678	+		GFF2257	0.54	+0.4
2,285,678	+		GFF2257	0.54	+0.1
2,285,678	+		GFF2257	0.54	-2.2
2,285,678	+		GFF2257	0.54	-1.0
2,285,678	+		GFF2257	0.54	+0.5
2,285,678	+		GFF2257	0.54	+0.5
2,285,678	+		GFF2257	0.54	-0.7
2,285,678	+		GFF2257	0.54	+0.8
2,285,686	+		GFF2257	0.56	+0.9
2,285,686	-		GFF2257	0.56	-0.6
2,285,686	-		GFF2257	0.56	+0.6
2,285,686	-		GFF2257	0.56	+0.6
2,285,686	-		GFF2257	0.56	-1.4
2,285,688	+		GFF2257	0.56	-1.1
2,285,696	-		GFF2257	0.58	-2.0
2,285,714	+		GFF2257	0.62	+0.0
2,285,737	+		GFF2257	0.68	+0.1
2,285,739	-		GFF2257	0.68	-0.3
2,285,745	-		GFF2257	0.69	+1.4
2,285,755	+		GFF2257	0.72	-0.7
2,285,755	+		GFF2257	0.72	-0.6
2,285,755	+		GFF2257	0.72	+0.4
2,285,755	+		GFF2257	0.72	-0.6
2,285,755	+		GFF2257	0.72	-2.0
2,285,760	+		GFF2257	0.73	-1.0
2,285,760	+		GFF2257	0.73	-1.2
2,285,767	+		GFF2257	0.74	-1.4
2,285,768	+		GFF2257	0.75	-0.6
2,285,768	-		GFF2257	0.75	-0.8
2,285,768	-		GFF2257	0.75	-0.9
2,285,776	-		GFF2257	0.76	-0.2
2,285,776	-		GFF2257	0.76	-0.9
2,285,785	-		GFF2257	0.78	+0.6
2,285,790	-		GFF2257	0.80	-0.2
2,285,791	-		GFF2257	0.80	+0.1
2,285,792	+		GFF2257	0.80	-0.7
2,285,792	+		GFF2257	0.80	-0.3
2,285,792	+		GFF2257	0.80	-0.2
2,285,797	-		GFF2257	0.81	-2.2
2,285,881	+				-0.0
2,285,913	-				-0.2
2,285,920	+				-1.4
2,285,920	+				-1.2
2,285,923	+				+1.5
2,285,924	-				-1.3
2,285,925	+				+0.3
2,285,928	-				+1.2
2,285,930	+				+0.6
2,285,930	+				+0.4
2,285,930	+				+0.9
2,285,930	+				+1.3
2,285,930	+				-0.5
2,285,930	+				+0.8
2,285,930	+				+0.1
2,285,930	+				-0.9
2,285,930	+				-3.0
2,285,930	+				-0.4
2,285,930	+				-0.7
2,285,930	+				+0.3
2,285,930	+				-1.0
2,285,933	-				+0.9
2,285,938	-				-0.5
2,285,938	-				-0.4
2,285,938	-				-2.4
2,285,938	-				-0.0
2,285,938	-				-1.2
2,285,955	+				+0.5
2,285,955	+				-0.1
2,285,955	+				-1.1
2,285,955	+				-0.7
2,285,963	-				+0.7
2,287,276	-				-0.6
2,287,276	-				-0.7
2,287,279	+				-0.6
2,287,283	-				-0.4
2,287,283	-				+0.4
2,287,326	+				-2.0
2,287,334	-				-2.0
2,287,334	-				-1.2
2,287,335	+				-1.5
2,287,365	+		GFF2259	0.14	-1.0
2,287,373	+		GFF2259	0.15	+0.5
2,287,373	-		GFF2259	0.15	-1.0
2,287,378	-		GFF2259	0.16	+0.3
2,287,380	+		GFF2259	0.16	-1.9
2,287,383	-		GFF2259	0.16	-1.3
2,287,383	-		GFF2259	0.16	+0.1
2,287,385	+		GFF2259	0.16	-0.1
2,287,385	+		GFF2259	0.16	+1.2
2,287,385	+		GFF2259	0.16	-1.4
2,287,385	+		GFF2259	0.16	-0.7
2,287,385	+		GFF2259	0.16	-1.0
2,287,385	+		GFF2259	0.16	+0.4
2,287,392	+		GFF2259	0.17	-1.1
2,287,392	+		GFF2259	0.17	-0.3
2,287,392	+		GFF2259	0.17	-0.4
2,287,393	-		GFF2259	0.18	+0.1
2,287,393	-		GFF2259	0.18	-0.1
2,287,400	-		GFF2259	0.18	-1.6
2,287,400	-		GFF2259	0.18	-0.6
2,287,400	-		GFF2259	0.18	-0.4
2,287,400	-		GFF2259	0.18	-0.8
2,287,400	-		GFF2259	0.18	-1.2
2,287,419	+		GFF2259	0.21	-0.8
2,287,422	-		GFF2259	0.21	+0.3
2,287,439	+		GFF2259	0.24	+0.5
2,287,447	-		GFF2259	0.25	-0.5
2,287,480	-		GFF2259	0.29	-0.4
2,287,529	+		GFF2259	0.35	+0.3
2,287,542	+		GFF2259	0.37	-1.4
2,287,550	-		GFF2259	0.38	+0.5
2,287,558	+		GFF2259	0.39	+0.1
2,287,559	+		GFF2259	0.39	+0.4
2,287,559	+		GFF2259	0.39	-0.1
2,287,559	+		GFF2259	0.39	-0.2
2,287,566	-		GFF2259	0.40	-1.7
2,287,567	-		GFF2259	0.40	-1.1
2,287,625	+		GFF2259	0.48	-0.8
2,287,631	+		GFF2259	0.49	-1.7
2,287,637	+		GFF2259	0.49	+0.1
2,287,637	+		GFF2259	0.49	-0.8
2,287,637	+		GFF2259	0.49	-0.8
2,287,638	-		GFF2259	0.50	-0.5
2,287,644	-		GFF2259	0.50	-0.4
2,287,644	-		GFF2259	0.50	-0.7
2,287,644	-		GFF2259	0.50	+0.3
2,287,644	-		GFF2259	0.50	-1.9
2,287,645	-		GFF2259	0.50	-0.9
2,287,664	+		GFF2259	0.53	-0.9
2,287,665	-		GFF2259	0.53	+0.7
2,287,682	+		GFF2259	0.55	+0.0
2,287,687	+		GFF2259	0.56	-1.7
2,287,687	+		GFF2259	0.56	+0.4
2,287,687	+		GFF2259	0.56	+0.3
2,287,687	+		GFF2259	0.56	-1.8
2,287,687	+		GFF2259	0.56	+0.6
2,287,687	+		GFF2259	0.56	-0.5
2,287,687	+		GFF2259	0.56	+0.5
2,287,687	+		GFF2259	0.56	+0.5
2,287,687	+		GFF2259	0.56	-0.3
2,287,687	+		GFF2259	0.56	-0.4
2,287,687	+		GFF2259	0.56	+0.3
2,287,687	+		GFF2259	0.56	+0.6
2,287,687	+		GFF2259	0.56	+0.4
2,287,687	+		GFF2259	0.56	-1.2
2,287,687	+		GFF2259	0.56	-1.0
2,287,687	+		GFF2259	0.56	-0.5
2,287,690	-		GFF2259	0.56	-1.6
2,287,695	-		GFF2259	0.57	-1.0
2,287,695	-		GFF2259	0.57	-0.5
2,287,695	-		GFF2259	0.57	+0.2
2,287,695	-		GFF2259	0.57	-0.1
2,287,695	-		GFF2259	0.57	-0.1
2,287,695	-		GFF2259	0.57	-0.7
2,287,695	-		GFF2259	0.57	-0.7
2,287,695	-		GFF2259	0.57	-0.9
2,287,695	-		GFF2259	0.57	+0.8
2,287,695	-		GFF2259	0.57	-1.8
2,287,695	-		GFF2259	0.57	-0.9
2,287,695	-		GFF2259	0.57	-1.0
2,287,695	-		GFF2259	0.57	-0.5
2,287,695	-		GFF2259	0.57	-0.3
2,287,695	-		GFF2259	0.57	-0.0
2,287,695	-		GFF2259	0.57	-0.9
2,287,695	-		GFF2259	0.57	-0.7
2,287,742	-		GFF2259	0.63	-0.2
2,287,747	-		GFF2259	0.64	-1.6
2,287,750	-		GFF2259	0.64	-0.5
2,287,772	+		GFF2259	0.67	+0.5
2,287,777	+		GFF2259	0.68	-0.1
2,287,782	+		GFF2259	0.68	+0.2
2,287,782	+		GFF2259	0.68	-0.8
2,287,782	+		GFF2259	0.68	-0.7
2,287,783	+		GFF2259	0.68	-0.2
2,287,783	+		GFF2259	0.68	-1.4
2,287,783	+		GFF2259	0.68	-2.1
2,287,783	+		GFF2259	0.68	-1.9
2,287,783	+		GFF2259	0.68	+0.1
2,287,783	+		GFF2259	0.68	+0.2
2,287,783	+		GFF2259	0.68	-2.8
2,287,783	+		GFF2259	0.68	-0.9
2,287,783	+		GFF2259	0.68	-0.7
2,287,783	+		GFF2259	0.68	-1.2
2,287,783	+		GFF2259	0.68	-0.8
2,287,783	+		GFF2259	0.68	-1.2
2,287,783	+		GFF2259	0.68	-0.2
2,287,783	+		GFF2259	0.68	-1.4
2,287,783	+		GFF2259	0.68	-0.8
2,287,783	+		GFF2259	0.68	-2.7
2,287,783	+		GFF2259	0.68	+0.4
2,287,783	+		GFF2259	0.68	+0.3
2,287,783	+		GFF2259	0.68	-0.6
2,287,783	+		GFF2259	0.68	+0.1
2,287,783	+		GFF2259	0.68	-1.8
2,287,783	+		GFF2259	0.68	-1.8
2,287,783	+		GFF2259	0.68	-0.9
2,287,783	+		GFF2259	0.68	+0.0
2,287,783	+		GFF2259	0.68	-0.0
2,287,785	-		GFF2259	0.69	-1.7
2,287,790	-		GFF2259	0.69	-0.4
2,287,790	-		GFF2259	0.69	-2.8
2,287,790	-		GFF2259	0.69	-0.6
2,287,790	-		GFF2259	0.69	+0.5
2,287,791	-		GFF2259	0.70	-0.5
2,287,791	-		GFF2259	0.70	-2.2
2,287,791	-		GFF2259	0.70	-0.1
2,287,791	-		GFF2259	0.70	-1.2
2,287,791	-		GFF2259	0.70	-1.2
2,287,791	-		GFF2259	0.70	-0.7
2,287,791	-		GFF2259	0.70	-0.4
2,287,791	-		GFF2259	0.70	-0.9
2,287,791	-		GFF2259	0.70	-1.3
2,287,791	-		GFF2259	0.70	+0.1
2,287,791	-		GFF2259	0.70	-2.2
2,287,791	-		GFF2259	0.70	+0.7
2,287,791	-		GFF2259	0.70	-0.5
2,287,791	-		GFF2259	0.70	-1.8
2,287,791	-		GFF2259	0.70	+0.2
2,287,791	-		GFF2259	0.70	-1.0
2,287,791	-		GFF2259	0.70	-0.5
2,287,791	-		GFF2259	0.70	-2.1
2,287,791	-		GFF2259	0.70	-0.9
2,287,791	-		GFF2259	0.70	+0.4
2,287,791	-		GFF2259	0.70	-0.8
2,287,791	-		GFF2259	0.70	+1.6
2,287,791	-		GFF2259	0.70	-1.0
2,287,791	-		GFF2259	0.70	-1.5
2,287,791	-		GFF2259	0.70	+0.8
2,287,810	-		GFF2259	0.72	-0.1
2,287,820	-		GFF2259	0.73	+1.7
2,287,838	-		GFF2259	0.76	-0.7
2,287,878	+		GFF2259	0.81	-1.4
2,287,883	+		GFF2259	0.82	-1.5
2,287,883	+		GFF2259	0.82	+0.5
2,287,883	+		GFF2259	0.82	-0.4
2,287,886	-		GFF2259	0.82	-0.1
2,287,891	-		GFF2259	0.83	-0.1
2,287,891	-		GFF2259	0.83	-0.1
2,287,892	-		GFF2259	0.83	+0.9
2,287,909	+		GFF2259	0.85	-0.7
2,287,914	+		GFF2259	0.86	-0.8
2,287,950	+				-1.0
2,287,981	+				+0.2
2,288,011	-				-1.8
2,288,022	+				-1.5
2,288,022	+				-0.0
2,288,022	+				+0.3
2,288,022	+				-1.0
2,288,022	+				-0.6
2,288,022	+				+0.4
2,288,022	+				-0.6
2,288,022	+				+0.3
2,288,022	+				-0.3
2,288,030	-				-0.9
2,288,030	-				+0.0
2,288,030	-				+0.7
2,288,030	-				-3.1
2,288,030	-				-0.7
2,288,030	-				-2.7
2,288,030	-				+0.4
2,288,030	-				-1.1
2,288,030	-				+0.4
2,288,030	-				+0.0
2,288,030	-				-0.1
2,288,030	-				-1.2
2,288,030	-				-0.6
2,288,030	-				+0.6
2,288,030	-				-0.4
2,288,030	-				-0.6
2,288,030	-				-0.4
2,288,030	-				+0.2
2,288,030	-				-0.3
2,288,043	+				-0.5
2,288,043	+				+0.3
2,288,051	-				-1.1
2,288,051	-				+0.6
2,288,055	+				-0.8
2,288,055	+				-1.2
2,288,087	-				-1.6
2,288,112	+				-1.1
2,288,112	+				-1.4
2,288,117	+				-0.1
2,288,122	-				-1.1
2,288,128	+				-1.4
2,288,128	+				+0.3
2,288,128	+				+0.6
2,288,128	+				-1.3
2,288,128	+				+0.2
2,288,128	+				+1.5
2,288,128	+				-0.1
2,288,128	+				-1.1
2,288,128	+				+0.4
2,288,128	+				-1.5
2,288,128	+				-1.4
2,288,128	+				-1.2
2,288,128	+				+0.5
2,288,128	+				-0.4
2,288,128	+				-0.1
2,288,128	+				-0.3
2,288,128	+				-1.3
2,288,128	+				-2.2
2,288,131	-				-1.8
2,288,133	+				-0.1
2,288,133	+				-0.2
2,288,133	+				-0.6
2,288,136	-				-0.5
2,288,136	-				-0.6
2,288,136	-				-0.4
2,288,136	-				+1.5
2,288,136	-				-0.4
2,288,136	-				+1.6
2,288,136	-				-1.2
2,288,136	-				+0.4
2,288,136	-				-0.4
2,288,136	-				-0.4
2,288,136	-				-0.5
2,288,136	-				+0.6
2,288,136	-				+0.6
2,288,136	-				-1.2
2,288,136	-				-1.3
2,288,136	-				-0.8
2,288,136	-				-0.6
2,288,136	-				-0.1
2,288,136	-				-0.7
2,288,141	-				-0.4
2,288,141	-				+0.6
2,288,141	-				-0.9
2,288,153	-				+0.0
2,288,155	+				-1.0
2,288,155	-				-1.0
2,288,160	+				+0.3
2,288,160	+				-0.7
2,288,162	+		GFF2260	0.10	-2.1
2,288,168	-		GFF2260	0.11	-2.2
2,288,184	-		GFF2260	0.12	-1.5
2,288,218	+		GFF2260	0.15	-2.2
2,288,226	-		GFF2260	0.16	-0.5
2,288,239	-		GFF2260	0.17	-0.2