Strain Fitness in Sphingobium sp. HT1-2 around GFF2246

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,272,166	+		GFF2244	0.74	-1.3
2,272,166	+		GFF2244	0.74	+0.6
2,272,166	+		GFF2244	0.74	-1.2
2,272,169	-		GFF2244	0.74	+1.1
2,272,169	-		GFF2244	0.74	+0.5
2,272,193	-		GFF2244	0.77	-2.0
2,272,203	-		GFF2244	0.77	-0.7
2,272,220	+		GFF2244	0.79	-0.5
2,272,228	-		GFF2244	0.80	-0.1
2,272,281	-		GFF2244	0.84	-0.6
2,272,286	+		GFF2244	0.85	-0.2
2,272,292	-		GFF2244	0.85	+1.5
2,272,295	+		GFF2244	0.86	-2.0
2,272,305	+		GFF2244	0.87	+0.6
2,272,306	+		GFF2244	0.87	-1.8
2,272,313	-		GFF2244	0.87	+0.4
2,272,324	+		GFF2244	0.88	-0.8
2,272,332	-		GFF2244	0.89	-1.1
2,272,332	-		GFF2244	0.89	-1.4
2,272,332	-		GFF2244	0.89	-0.5
2,272,332	-		GFF2244	0.89	-1.3
2,272,332	-		GFF2244	0.89	+0.8
2,272,337	-		GFF2244	0.89	-0.5
2,272,378	-				-1.4
2,272,394	+				-0.4
2,272,394	+				+0.2
2,272,404	+				-1.0
2,272,404	+				-0.6
2,272,404	+				-1.4
2,272,412	-				-0.6
2,272,412	-				-1.5
2,272,412	-				+1.8
2,272,412	-				+1.0
2,272,412	-				+0.8
2,272,412	-				+0.2
2,272,412	-				+0.1
2,272,412	-				+1.2
2,272,452	+				-0.1
2,272,459	+				-0.7
2,272,468	-				-0.6
2,272,472	-				+0.4
2,272,473	-				-1.2
2,272,474	-				-1.1
2,272,482	-				-2.7
2,272,487	+				+0.5
2,272,499	-				+0.7
2,272,584	+				-0.8
2,272,592	-				-1.6
2,272,596	+				-0.8
2,272,597	-				-1.3
2,272,604	-				-1.0
2,272,604	-				-1.4
2,272,604	-				-1.0
2,272,605	-				-0.9
2,272,613	-				-2.0
2,272,615	-				+0.5
2,272,621	-				-1.3
2,272,628	-				-1.3
2,272,664	+				-1.5
2,272,664	+				-2.2
2,272,672	-				-0.2
2,272,672	-				-1.2
2,272,677	+				-0.1
2,272,720	+		GFF2245	0.18	-2.0
2,272,720	+		GFF2245	0.18	-1.5
2,272,720	+		GFF2245	0.18	+0.2
2,272,720	+		GFF2245	0.18	-0.5
2,272,720	+		GFF2245	0.18	-0.4
2,272,720	+		GFF2245	0.18	-1.3
2,272,720	+		GFF2245	0.18	-0.1
2,272,720	+		GFF2245	0.18	-1.0
2,272,722	-		GFF2245	0.19	+0.4
2,272,723	-		GFF2245	0.19	-0.3
2,272,728	-		GFF2245	0.20	-1.2
2,272,728	-		GFF2245	0.20	-0.9
2,272,728	-		GFF2245	0.20	+0.3
2,272,728	-		GFF2245	0.20	-0.5
2,272,737	-		GFF2245	0.22	-3.0
2,272,739	+		GFF2245	0.23	-0.2
2,272,747	-		GFF2245	0.25	-0.6
2,272,747	-		GFF2245	0.25	-0.6
2,272,768	+		GFF2245	0.30	-1.0
2,272,777	-		GFF2245	0.32	-1.1
2,272,811	+		GFF2245	0.40	-0.5
2,272,819	-		GFF2245	0.42	-0.8
2,272,819	-		GFF2245	0.42	+0.0
2,272,839	-		GFF2245	0.46	-0.0
2,272,865	+		GFF2245	0.52	+0.0
2,272,870	+		GFF2245	0.54	-1.6
2,272,899	+		GFF2245	0.61	-1.2
2,272,899	+		GFF2245	0.61	-0.9
2,272,899	+		GFF2245	0.61	-1.2
2,272,907	-		GFF2245	0.62	-1.2
2,272,912	-		GFF2245	0.64	+2.5
2,272,930	+		GFF2245	0.68	-1.1
2,272,930	+		GFF2245	0.68	-1.4
2,272,934	-		GFF2245	0.69	-0.5
2,272,965	-		GFF2245	0.76	-0.7
2,272,971	-		GFF2245	0.78	-0.2
2,273,027	+				+0.3
2,273,034	+				-0.4
2,273,037	+				-1.4
2,273,037	+				+0.5
2,273,037	+				-0.5
2,273,045	-				+0.0
2,273,055	+				-0.6
2,273,062	+				-0.8
2,273,068	-				-0.8
2,273,068	-				+1.0
2,273,082	-				-0.0
2,273,093	-				+0.1
2,273,098	+				-0.4
2,273,112	-				-0.6
2,273,265	+		GFF2246	0.15	+0.1
2,273,265	+		GFF2246	0.15	+0.1
2,273,330	-		GFF2246	0.25	-1.4
2,273,331	+		GFF2246	0.25	-0.7
2,273,354	+		GFF2246	0.29	+0.3
2,273,371	-		GFF2246	0.31	-0.9
2,273,378	+		GFF2246	0.32	-0.6
2,273,378	+		GFF2246	0.32	-1.6
2,273,386	-		GFF2246	0.34	-0.6
2,273,410	+		GFF2246	0.37	-2.2
2,273,410	+		GFF2246	0.37	-1.1
2,273,431	+		GFF2246	0.41	-1.6
2,273,436	+		GFF2246	0.41	+0.8
2,273,436	+		GFF2246	0.41	+0.0
2,273,436	+		GFF2246	0.41	-1.5
2,273,442	+		GFF2246	0.42	-0.6
2,273,444	-		GFF2246	0.43	+0.2
2,273,444	-		GFF2246	0.43	-1.6
2,273,444	-		GFF2246	0.43	-0.9
2,273,450	-		GFF2246	0.43	-0.2
2,273,476	+		GFF2246	0.47	+0.0
2,273,478	+		GFF2246	0.48	-1.3
2,273,478	+		GFF2246	0.48	-0.9
2,273,486	-		GFF2246	0.49	+1.1
2,273,496	-		GFF2246	0.50	-0.2
2,273,497	+		GFF2246	0.51	+0.4
2,273,501	-		GFF2246	0.51	-0.2
2,273,512	+		GFF2246	0.53	+0.7
2,273,520	-		GFF2246	0.54	-1.3
2,273,520	-		GFF2246	0.54	-0.7
2,273,520	-		GFF2246	0.54	-0.2
2,273,522	+		GFF2246	0.54	-2.5
2,273,530	-		GFF2246	0.56	-0.1
2,273,544	+		GFF2246	0.58	-0.6
2,273,552	-		GFF2246	0.59	+0.5
2,273,559	-		GFF2246	0.60	+0.7
2,273,614	-		GFF2246	0.69	-0.7
2,273,615	-		GFF2246	0.69	-1.1
2,273,626	+		GFF2246	0.70	-0.5
2,273,626	+		GFF2246	0.70	-0.7
2,273,626	+		GFF2246	0.70	-0.6
2,273,626	+		GFF2246	0.70	+0.4
2,273,626	+		GFF2246	0.70	+0.2
2,273,626	+		GFF2246	0.70	-0.6
2,273,626	+		GFF2246	0.70	-1.5
2,273,626	+		GFF2246	0.70	-1.6
2,273,634	-		GFF2246	0.72	-0.4
2,273,634	-		GFF2246	0.72	-0.8
2,273,634	-		GFF2246	0.72	+0.8
2,273,634	-		GFF2246	0.72	-0.2
2,273,634	-		GFF2246	0.72	+0.8
2,273,634	-		GFF2246	0.72	+0.5
2,273,634	-		GFF2246	0.72	-0.6
2,273,634	-		GFF2246	0.72	-0.5
2,273,634	-		GFF2246	0.72	+0.8
2,273,634	-		GFF2246	0.72	-0.3
2,273,634	-		GFF2246	0.72	-2.2
2,273,634	-		GFF2246	0.72	-0.1
2,273,634	-		GFF2246	0.72	-1.2
2,273,634	-		GFF2246	0.72	-1.3
2,273,646	-		GFF2246	0.73	-2.0
2,273,654	+		GFF2246	0.75	+0.2
2,273,666	+		GFF2246	0.76	-1.7
2,273,669	-		GFF2246	0.77	-0.6
2,273,697	-		GFF2246	0.81	-0.2
2,273,698	-		GFF2246	0.81	-0.5
2,273,707	-		GFF2246	0.83	+1.4
2,273,714	-		GFF2246	0.84	+0.6
2,273,733	+		GFF2246	0.87	-0.6
2,273,733	+		GFF2246	0.87	-0.1
2,273,740	+		GFF2246	0.88	-0.6
2,273,754	-				+0.3
2,273,777	+				-0.4
2,273,777	+				-1.1
2,273,823	+				-0.2
2,273,830	-				-2.3
2,273,835	+				+0.6
2,273,843	-				-0.6
2,273,848	+				-0.1
2,273,863	+				+0.9
2,273,871	-				-0.5
2,273,871	-				-1.3
2,273,876	-				-0.6
2,273,932	+				-1.2
2,273,947	+				-1.4
2,273,947	+				-1.2
2,273,955	-				+0.6
2,273,965	+				-0.6
2,273,973	-				-1.7
2,274,001	-				-0.4
2,274,040	+				+0.2
2,274,068	-				-1.1
2,274,068	-				+0.3
2,274,070	+				-0.4
2,274,090	-				+1.0
2,274,095	+				+0.2
2,274,131	-				-1.4
2,274,131	-				+0.3
2,274,145	+		GFF2247	0.11	-0.2
2,274,172	+		GFF2247	0.13	-0.2
2,274,192	+		GFF2247	0.14	-2.1
2,274,223	-		GFF2247	0.16	-0.1
2,274,223	-		GFF2247	0.16	-0.1
2,274,227	+		GFF2247	0.16	-1.4
2,274,227	+		GFF2247	0.16	+0.3
2,274,235	-		GFF2247	0.17	+0.3
2,274,248	-		GFF2247	0.18	-0.1
2,274,285	+		GFF2247	0.21	+0.9
2,274,285	+		GFF2247	0.21	-0.6
2,274,285	+		GFF2247	0.21	+0.5
2,274,285	+		GFF2247	0.21	-0.2
2,274,293	-		GFF2247	0.21	-0.3
2,274,297	+		GFF2247	0.22	+0.3
2,274,332	-		GFF2247	0.24	-1.7
2,274,365	+		GFF2247	0.26	+1.6
2,274,369	-		GFF2247	0.27	+0.7
2,274,414	-		GFF2247	0.30	+1.2
2,274,414	-		GFF2247	0.30	-0.1
2,274,428	+		GFF2247	0.31	-1.2
2,274,478	+		GFF2247	0.34	-0.2
2,274,478	+		GFF2247	0.34	+1.2
2,274,482	+		GFF2247	0.35	+0.5
2,274,490	-		GFF2247	0.35	-0.8
2,274,501	+		GFF2247	0.36	+0.3
2,274,501	+		GFF2247	0.36	-0.5
2,274,501	+		GFF2247	0.36	-0.1
2,274,507	-		GFF2247	0.37	-0.9
2,274,509	+		GFF2247	0.37	+0.1
2,274,509	-		GFF2247	0.37	+0.1
2,274,509	-		GFF2247	0.37	+0.0
2,274,509	-		GFF2247	0.37	+0.6
2,274,566	+		GFF2247	0.41	+1.6
2,274,566	+		GFF2247	0.41	+0.1
2,274,566	+		GFF2247	0.41	-1.7
2,274,574	-		GFF2247	0.41	-0.5
2,274,582	+		GFF2247	0.42	+0.3
2,274,587	+		GFF2247	0.42	+0.9
2,274,590	-		GFF2247	0.43	+0.8
2,274,590	-		GFF2247	0.43	-2.3
2,274,590	-		GFF2247	0.43	-2.5
2,274,593	+		GFF2247	0.43	+0.3
2,274,614	+		GFF2247	0.44	+1.5
2,274,624	+		GFF2247	0.45	-0.0
2,274,634	+		GFF2247	0.46	-1.2
2,274,642	-		GFF2247	0.46	-1.6
2,274,642	-		GFF2247	0.46	+0.2
2,274,653	+		GFF2247	0.47	+0.8
2,274,653	+		GFF2247	0.47	-1.6
2,274,653	+		GFF2247	0.47	-0.6
2,274,661	-		GFF2247	0.48	+0.3
2,274,661	-		GFF2247	0.48	-1.1
2,274,661	-		GFF2247	0.48	-1.6
2,274,661	-		GFF2247	0.48	-0.4
2,274,674	-		GFF2247	0.49	-0.5
2,274,697	-		GFF2247	0.50	-1.0
2,274,737	-		GFF2247	0.53	+0.4
2,274,737	-		GFF2247	0.53	+0.0
2,274,737	-		GFF2247	0.53	-1.1
2,274,745	+		GFF2247	0.54	+1.2
2,274,745	+		GFF2247	0.54	-1.4
2,274,745	+		GFF2247	0.54	+0.1
2,274,745	+		GFF2247	0.54	+0.8
2,274,746	-		GFF2247	0.54	-0.7
2,274,757	-		GFF2247	0.54	-1.1
2,274,782	+		GFF2247	0.56	-0.7
2,274,790	-		GFF2247	0.57	+0.6
2,274,790	-		GFF2247	0.57	-0.5
2,274,790	-		GFF2247	0.57	-0.5
2,274,790	-		GFF2247	0.57	-1.1
2,274,798	+		GFF2247	0.57	-0.4
2,274,798	+		GFF2247	0.57	-1.1
2,274,798	+		GFF2247	0.57	+0.1
2,274,803	+		GFF2247	0.58	+0.2
2,274,806	-		GFF2247	0.58	+0.6
2,274,819	-		GFF2247	0.59	-1.0