Strain Fitness in Sphingobium sp. HT1-2 around GFF2098

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,132,969	+		GFF2097	0.12	+0.2
2,132,977	-		GFF2097	0.13	+2.2
2,132,980	+		GFF2097	0.13	-1.4
2,133,007	+		GFF2097	0.16	+1.7
2,133,023	+		GFF2097	0.17	-0.3
2,133,073	+		GFF2097	0.22	+0.1
2,133,081	-		GFF2097	0.23	-0.9
2,133,091	-		GFF2097	0.24	-1.4
2,133,093	+		GFF2097	0.24	+0.7
2,133,101	-		GFF2097	0.25	+0.6
2,133,103	-		GFF2097	0.25	-0.9
2,133,147	-		GFF2097	0.29	-1.3
2,133,177	-		GFF2097	0.32	-1.1
2,133,194	+		GFF2097	0.34	+0.1
2,133,194	+		GFF2097	0.34	-1.9
2,133,194	+		GFF2097	0.34	+0.7
2,133,194	+		GFF2097	0.34	-0.8
2,133,194	+		GFF2097	0.34	-0.3
2,133,194	+		GFF2097	0.34	+0.1
2,133,194	+		GFF2097	0.34	-0.1
2,133,194	+		GFF2097	0.34	+1.3
2,133,202	-		GFF2097	0.34	+0.1
2,133,202	-		GFF2097	0.34	-0.8
2,133,202	-		GFF2097	0.34	-1.7
2,133,202	-		GFF2097	0.34	+1.1
2,133,202	-		GFF2097	0.34	-0.7
2,133,202	-		GFF2097	0.34	-0.2
2,133,202	-		GFF2097	0.34	+0.3
2,133,202	-		GFF2097	0.34	-0.8
2,133,202	-		GFF2097	0.34	+0.8
2,133,202	-		GFF2097	0.34	+1.2
2,133,202	-		GFF2097	0.34	-0.5
2,133,202	-		GFF2097	0.34	-0.6
2,133,202	-		GFF2097	0.34	+0.1
2,133,202	-		GFF2097	0.34	+1.0
2,133,227	+		GFF2097	0.37	+1.4
2,133,245	+		GFF2097	0.38	-2.1
2,133,245	+		GFF2097	0.38	-1.2
2,133,253	-		GFF2097	0.39	-1.4
2,133,269	+		GFF2097	0.41	-0.3
2,133,276	+		GFF2097	0.41	-0.5
2,133,314	+		GFF2097	0.45	+0.8
2,133,314	+		GFF2097	0.45	+1.1
2,133,317	-		GFF2097	0.45	-0.2
2,133,320	-		GFF2097	0.46	+0.0
2,133,327	+		GFF2097	0.46	+1.0
2,133,338	+		GFF2097	0.47	-0.7
2,133,364	-		GFF2097	0.50	-0.2
2,133,364	-		GFF2097	0.50	-1.8
2,133,365	+		GFF2097	0.50	-1.4
2,133,366	+		GFF2097	0.50	-0.6
2,133,367	+		GFF2097	0.50	-1.3
2,133,367	+		GFF2097	0.50	-0.7
2,133,378	-		GFF2097	0.51	+1.7
2,133,419	-		GFF2097	0.55	+1.4
2,133,468	+		GFF2097	0.60	+0.9
2,133,478	+		GFF2097	0.61	-0.1
2,133,478	+		GFF2097	0.61	+0.2
2,133,481	-		GFF2097	0.61	-0.0
2,133,485	+		GFF2097	0.61	-1.3
2,133,485	+		GFF2097	0.61	-1.3
2,133,486	-		GFF2097	0.61	+1.1
2,133,486	-		GFF2097	0.61	+1.0
2,133,492	-		GFF2097	0.62	-1.5
2,133,501	+		GFF2097	0.63	-0.5
2,133,506	+		GFF2097	0.63	+0.1
2,133,514	-		GFF2097	0.64	+0.4
2,133,545	+		GFF2097	0.67	+1.0
2,133,557	-		GFF2097	0.68	-1.4
2,133,557	-		GFF2097	0.68	-2.3
2,133,574	+		GFF2097	0.70	-1.3
2,133,574	+		GFF2097	0.70	+0.3
2,133,574	+		GFF2097	0.70	+1.0
2,133,574	+		GFF2097	0.70	-0.5
2,133,580	-		GFF2097	0.70	+0.2
2,133,582	-		GFF2097	0.71	-1.1
2,133,582	-		GFF2097	0.71	+0.0
2,133,584	+		GFF2097	0.71	+1.3
2,133,589	+		GFF2097	0.71	-0.3
2,133,589	+		GFF2097	0.71	-0.3
2,133,597	+		GFF2097	0.72	+0.9
2,133,597	-		GFF2097	0.72	+0.1
2,133,597	-		GFF2097	0.72	+0.2
2,133,597	-		GFF2097	0.72	+0.5
2,133,597	-		GFF2097	0.72	+0.9
2,133,597	-		GFF2097	0.72	+0.6
2,133,611	-		GFF2097	0.73	-1.5
2,133,617	+		GFF2097	0.74	+0.2
2,133,632	-		GFF2097	0.75	-0.3
2,133,646	+		GFF2097	0.77	-2.0
2,133,655	+		GFF2097	0.78	-0.1
2,133,702	+		GFF2097	0.82	-0.7
2,133,734	+		GFF2097	0.85	+0.1
2,133,736	+		GFF2097	0.85	-1.5
2,133,754	-		GFF2097	0.87	-0.1
2,133,785	+				-1.7
2,133,788	-				-0.3
2,133,808	-				+0.5
2,133,810	-				+1.0
2,133,825	+				+0.2
2,133,849	-				-0.9
2,133,864	+				+0.1
2,133,864	+				-0.9
2,133,866	-				+0.0
2,133,880	+				-0.6
2,133,912	-				-0.2
2,133,914	+				+1.4
2,133,922	-				-0.6
2,133,922	-				-1.8
2,133,979	+				-0.4
2,133,979	+				-2.0
2,134,042	+		GFF2098	0.11	+2.0
2,134,059	+		GFF2098	0.13	-0.5
2,134,077	+		GFF2098	0.15	-0.4
2,134,078	+		GFF2098	0.15	-1.0
2,134,078	+		GFF2098	0.15	-0.1
2,134,078	+		GFF2098	0.15	-0.5
2,134,078	+		GFF2098	0.15	-1.0
2,134,079	+		GFF2098	0.15	+1.4
2,134,087	-		GFF2098	0.16	-0.3
2,134,101	+		GFF2098	0.17	-0.3
2,134,127	+		GFF2098	0.20	+0.3
2,134,241	+		GFF2098	0.33	-1.8
2,134,249	-		GFF2098	0.34	+0.3
2,134,249	-		GFF2098	0.34	-0.8
2,134,281	+		GFF2098	0.38	-0.1
2,134,281	+		GFF2098	0.38	-2.2
2,134,289	-		GFF2098	0.39	+0.3
2,134,289	-		GFF2098	0.39	-0.7
2,134,289	-		GFF2098	0.39	+0.2
2,134,308	-		GFF2098	0.41	-0.3
2,134,334	+		GFF2098	0.44	+0.0
2,134,339	+		GFF2098	0.45	-0.5
2,134,347	-		GFF2098	0.46	-0.7
2,134,388	+		GFF2098	0.50	-0.8
2,134,403	-		GFF2098	0.52	-0.6
2,134,435	+		GFF2098	0.56	+0.1
2,134,452	+		GFF2098	0.58	-1.5
2,134,460	+		GFF2098	0.59	+0.0
2,134,473	+		GFF2098	0.60	-0.7
2,134,476	+		GFF2098	0.60	-0.6
2,134,476	-		GFF2098	0.60	-0.3
2,134,486	+		GFF2098	0.62	-2.1
2,134,489	-		GFF2098	0.62	-1.5
2,134,494	-		GFF2098	0.63	-0.5
2,134,497	+		GFF2098	0.63	-1.1
2,134,497	+		GFF2098	0.63	+0.5
2,134,497	+		GFF2098	0.63	-0.7
2,134,497	+		GFF2098	0.63	+0.4
2,134,505	-		GFF2098	0.64	-0.9
2,134,507	+		GFF2098	0.64	-1.1
2,134,543	+		GFF2098	0.68	+1.5
2,134,544	-		GFF2098	0.68	-0.8
2,134,552	+		GFF2098	0.69	-0.0
2,134,586	+		GFF2098	0.73	-1.6
2,134,651	+		GFF2098	0.81	-1.4
2,134,657	+		GFF2098	0.81	+0.1
2,134,659	-		GFF2098	0.81	-0.8
2,134,659	-		GFF2098	0.81	-1.2
2,134,686	-		GFF2098	0.85	-1.9
2,134,718	+		GFF2098	0.88	-1.2
2,134,726	-		GFF2098	0.89	-1.0
2,134,733	-				+1.4
2,134,746	-				-0.8
2,134,751	+				-0.2
2,134,759	-				-1.1
2,134,786	+				+0.1
2,134,786	+				-1.0
2,134,788	+				-0.5
2,134,794	-				-2.6
2,134,796	-				-1.4
2,134,839	-				-1.0
2,134,855	+				-1.8
2,134,883	-				+0.5
2,134,902	-				+0.1
2,134,938	+				-0.8
2,134,941	-				-1.8
2,134,995	-				-0.0
2,134,998	+				-0.9
2,135,009	+				+0.9
2,135,029	+		GFF2099	0.10	+0.5
2,135,035	-		GFF2099	0.11	-1.0
2,135,051	+		GFF2099	0.13	-1.8
2,135,051	+		GFF2099	0.13	+2.7
2,135,059	-		GFF2099	0.14	-2.0
2,135,061	+		GFF2099	0.14	-0.6
2,135,061	+		GFF2099	0.14	+0.9
2,135,061	+		GFF2099	0.14	-0.7
2,135,061	+		GFF2099	0.14	+0.1
2,135,061	+		GFF2099	0.14	-1.4
2,135,061	+		GFF2099	0.14	+0.5
2,135,061	+		GFF2099	0.14	-0.3
2,135,062	+		GFF2099	0.14	+0.1
2,135,069	-		GFF2099	0.15	-0.5
2,135,069	-		GFF2099	0.15	-0.3
2,135,069	-		GFF2099	0.15	+0.8
2,135,074	-		GFF2099	0.15	-0.1
2,135,084	-		GFF2099	0.17	-0.7
2,135,092	-		GFF2099	0.18	-2.2
2,135,092	-		GFF2099	0.18	-1.7
2,135,096	-		GFF2099	0.18	-0.6
2,135,103	+		GFF2099	0.19	-0.5
2,135,142	+		GFF2099	0.23	+1.1
2,135,248	-		GFF2099	0.36	-1.7
2,135,248	-		GFF2099	0.36	+1.7
2,135,250	+		GFF2099	0.36	-0.9
2,135,271	+		GFF2099	0.38	-0.7
2,135,271	+		GFF2099	0.38	-0.7
2,135,271	+		GFF2099	0.38	-0.2
2,135,279	-		GFF2099	0.39	+0.2
2,135,279	-		GFF2099	0.39	-1.7
2,135,302	+		GFF2099	0.42	-1.3
2,135,306	+		GFF2099	0.43	-1.2
2,135,311	+		GFF2099	0.43	-1.7
2,135,314	-		GFF2099	0.44	-1.0
2,135,314	-		GFF2099	0.44	-0.9
2,135,385	+		GFF2099	0.52	-1.4
2,135,385	+		GFF2099	0.52	+0.7
2,135,385	+		GFF2099	0.52	-1.2
2,135,385	+		GFF2099	0.52	-1.0
2,135,385	+		GFF2099	0.52	+1.2
2,135,385	+		GFF2099	0.52	+0.8
2,135,385	+		GFF2099	0.52	-0.2
2,135,385	+		GFF2099	0.52	-1.7
2,135,385	+		GFF2099	0.52	-1.6
2,135,385	+		GFF2099	0.52	-1.5
2,135,393	-		GFF2099	0.53	-0.5
2,135,393	-		GFF2099	0.53	+0.9
2,135,393	-		GFF2099	0.53	+1.1
2,135,393	-		GFF2099	0.53	-1.8
2,135,393	-		GFF2099	0.53	-0.8
2,135,404	-		GFF2099	0.54	-0.7
2,135,422	+		GFF2099	0.56	+0.4
2,135,432	+		GFF2099	0.57	+0.2
2,135,432	+		GFF2099	0.57	-0.2
2,135,432	+		GFF2099	0.57	-0.7
2,135,440	-		GFF2099	0.58	-2.0
2,135,440	-		GFF2099	0.58	-0.1
2,135,440	-		GFF2099	0.58	-0.0
2,135,440	-		GFF2099	0.58	-0.3
2,135,514	-		GFF2099	0.67	-0.5
2,135,552	+		GFF2099	0.71	-2.0
2,135,572	-		GFF2099	0.74	-0.2
2,135,572	-		GFF2099	0.74	-0.7
2,135,597	+		GFF2099	0.77	+1.7
2,135,597	+		GFF2099	0.77	-2.1
2,135,597	+		GFF2099	0.77	+0.9
2,135,605	-		GFF2099	0.78	-0.8
2,135,645	-		GFF2099	0.82	+0.3
2,135,656	+		GFF2099	0.84	-0.1
2,135,656	+		GFF2099	0.84	-1.7
2,135,656	+		GFF2099	0.84	+0.6
2,135,663	-		GFF2099	0.84	-0.5
2,135,663	-		GFF2099	0.84	-0.8
2,135,663	-		GFF2099	0.84	+0.1
2,135,664	-		GFF2099	0.84	+0.6
2,135,664	-		GFF2099	0.84	-0.8
2,135,664	-		GFF2099	0.84	+0.4
2,135,666	+		GFF2099	0.85	-0.5
2,135,666	+		GFF2099	0.85	+0.4
2,135,666	+		GFF2099	0.85	+1.2
2,135,666	+		GFF2099	0.85	+0.1
2,135,674	-		GFF2099	0.86	-0.0
2,135,674	-		GFF2099	0.86	-2.1
2,135,674	-		GFF2099	0.86	+0.4
2,135,674	-		GFF2099	0.86	+0.7
2,135,674	-		GFF2099	0.86	+1.4
2,135,674	-		GFF2099	0.86	+1.4
2,135,674	-		GFF2099	0.86	-0.2
2,135,683	+		GFF2099	0.87	+1.7
2,135,684	+		GFF2099	0.87	-1.6
2,135,684	+		GFF2099	0.87	+0.5
2,135,684	-		GFF2099	0.87	-0.9
2,135,691	-		GFF2099	0.88	+0.0
2,135,691	-		GFF2099	0.88	-1.0
2,135,710	-		GFF2099	0.90	-1.5
2,135,741	+				-0.4
2,135,741	+				-2.2
2,135,741	+				-0.8
2,135,746	+				-0.4
2,135,751	+				+0.2
2,135,751	+				-0.9
2,135,756	+				-0.1
2,135,768	-				-0.0
2,135,775	-				-0.5
2,135,782	+				+1.6
2,135,790	-				+0.7
2,135,795	-				+0.8
2,135,800	+				-1.7
2,135,808	-				-1.4
2,135,808	-				+0.2
2,135,809	-				-0.3