Strain Fitness in Sphingobium sp. HT1-2 around GFF2095

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,130,753	+				+0.3
2,130,753	+				+1.0
2,130,775	-				-0.6
2,130,820	+				-1.5
2,130,833	+				-1.9
2,130,849	-				+0.3
2,130,849	-				-1.0
2,130,885	+				-1.6
2,130,893	-				+0.8
2,130,893	-				-0.8
2,130,893	-				-1.6
2,130,910	+				-0.0
2,130,910	+				+0.1
2,130,915	+				-0.6
2,130,917	+				-1.3
2,130,927	+				-0.1
2,130,927	+				+0.5
2,130,928	-				-2.1
2,130,934	+				-0.3
2,130,935	+				-1.5
2,130,943	-				-0.1
2,130,953	+				-1.9
2,130,979	+				+1.1
2,130,979	+				-1.1
2,130,984	+				-1.0
2,131,017	-				-0.9
2,131,023	+				+0.3
2,131,048	-		GFF2094	0.12	+1.2
2,131,073	-		GFF2094	0.16	+0.6
2,131,093	+		GFF2094	0.19	-0.7
2,131,094	+		GFF2094	0.19	-1.0
2,131,094	+		GFF2094	0.19	-0.4
2,131,094	+		GFF2094	0.19	-0.2
2,131,094	+		GFF2094	0.19	-0.0
2,131,094	+		GFF2094	0.19	+0.1
2,131,094	+		GFF2094	0.19	-2.6
2,131,102	-		GFF2094	0.20	-0.5
2,131,102	-		GFF2094	0.20	-1.8
2,131,102	-		GFF2094	0.20	-0.6
2,131,102	-		GFF2094	0.20	-0.8
2,131,102	-		GFF2094	0.20	-0.2
2,131,102	-		GFF2094	0.20	+0.0
2,131,102	-		GFF2094	0.20	-1.6
2,131,102	-		GFF2094	0.20	-0.2
2,131,102	-		GFF2094	0.20	-0.0
2,131,102	-		GFF2094	0.20	-1.3
2,131,102	-		GFF2094	0.20	-0.6
2,131,102	-		GFF2094	0.20	-1.6
2,131,111	-		GFF2094	0.21	-0.3
2,131,111	-		GFF2094	0.21	-0.5
2,131,111	-		GFF2094	0.21	+0.1
2,131,112	-		GFF2094	0.22	-0.0
2,131,113	+		GFF2094	0.22	+1.2
2,131,148	-		GFF2094	0.27	-0.8
2,131,154	+		GFF2094	0.28	-1.1
2,131,154	+		GFF2094	0.28	-2.1
2,131,162	-		GFF2094	0.29	-0.3
2,131,197	-		GFF2094	0.34	+0.7
2,131,197	-		GFF2094	0.34	+0.2
2,131,232	-		GFF2094	0.39	+1.3
2,131,235	+		GFF2094	0.40	+0.6
2,131,242	+		GFF2094	0.41	-0.8
2,131,243	+		GFF2094	0.41	+0.0
2,131,253	+		GFF2094	0.42	-0.5
2,131,261	-		GFF2094	0.43	+0.8
2,131,285	+		GFF2094	0.47	-2.0
2,131,300	+		GFF2094	0.49	+0.5
2,131,300	+		GFF2094	0.49	-1.9
2,131,300	+		GFF2094	0.49	-0.7
2,131,300	+		GFF2094	0.49	-0.2
2,131,300	+		GFF2094	0.49	+0.1
2,131,300	-		GFF2094	0.49	+0.0
2,131,308	-		GFF2094	0.50	-0.2
2,131,308	-		GFF2094	0.50	-1.0
2,131,308	-		GFF2094	0.50	-0.1
2,131,308	-		GFF2094	0.50	+0.5
2,131,308	-		GFF2094	0.50	-0.5
2,131,343	-		GFF2094	0.55	+0.1
2,131,350	-		GFF2094	0.56	-0.3
2,131,350	-		GFF2094	0.56	-0.7
2,131,352	+		GFF2094	0.57	-0.6
2,131,355	-		GFF2094	0.57	+1.0
2,131,356	+		GFF2094	0.57	+0.5
2,131,361	+		GFF2094	0.58	-0.7
2,131,369	-		GFF2094	0.59	+0.5
2,131,369	-		GFF2094	0.59	-2.7
2,131,369	-		GFF2094	0.59	-0.1
2,131,369	-		GFF2094	0.59	+0.1
2,131,371	+		GFF2094	0.60	-1.7
2,131,374	+		GFF2094	0.60	+0.1
2,131,374	+		GFF2094	0.60	+0.6
2,131,381	+		GFF2094	0.61	-1.5
2,131,401	-		GFF2094	0.64	+0.9
2,131,413	-		GFF2094	0.66	-1.7
2,131,423	-		GFF2094	0.67	+0.3
2,131,432	+		GFF2094	0.68	-1.6
2,131,440	-		GFF2094	0.70	-1.4
2,131,496	+		GFF2094	0.78	+0.4
2,131,501	+		GFF2094	0.79	-2.0
2,131,501	+		GFF2094	0.79	-0.6
2,131,509	-		GFF2094	0.80	+0.1
2,131,533	-		GFF2094	0.83	-2.0
2,131,537	+		GFF2094	0.84	+0.9
2,131,537	+		GFF2094	0.84	-0.5
2,131,545	-		GFF2094	0.85	+0.5
2,131,557	+		GFF2094	0.87	+0.8
2,131,562	+		GFF2094	0.87	+0.6
2,131,567	+		GFF2094	0.88	+0.0
2,131,567	+		GFF2094	0.88	+0.9
2,131,575	-		GFF2094	0.89	+0.1
2,131,575	-		GFF2094	0.89	-0.9
2,131,575	-		GFF2094	0.89	+0.3
2,131,576	-		GFF2094	0.89	+1.2
2,131,592	-				+0.2
2,131,600	-				-1.5
2,131,603	+				-0.7
2,131,603	-				+1.6
2,131,606	+				+0.5
2,131,640	-				-0.0
2,131,663	-				-0.6
2,131,705	+				-1.3
2,131,725	-				+0.6
2,131,727	+				+1.0
2,131,732	+				-0.5
2,131,732	+				-0.0
2,131,732	+				-1.7
2,131,732	+				-0.4
2,131,735	-				-1.5
2,131,737	+				-0.4
2,131,737	+				-0.5
2,131,737	+				+1.3
2,131,737	+				-1.0
2,131,740	-				-0.6
2,131,745	-				+1.4
2,131,745	-				+0.8
2,131,745	-				-2.2
2,131,745	-				-0.3
2,131,752	-				+0.0
2,131,760	+				-0.4
2,131,767	+				-0.3
2,131,767	+				+0.3
2,131,767	+				+0.0
2,131,775	-				+0.8
2,131,775	-				+0.2
2,131,775	-				-0.5
2,131,775	-				+1.0
2,131,775	-				-1.4
2,131,786	+				-0.4
2,131,801	-				-1.2
2,131,813	+				-0.0
2,131,813	+				+0.7
2,131,813	-				-0.8
2,131,821	-				-0.7
2,131,821	-				+1.3
2,131,836	+		GFF2095	0.11	-0.7
2,131,836	+		GFF2095	0.11	-2.0
2,131,836	+		GFF2095	0.11	+0.7
2,131,844	-		GFF2095	0.11	-1.1
2,131,844	-		GFF2095	0.11	+0.7
2,131,865	-		GFF2095	0.14	-0.0
2,131,867	+		GFF2095	0.14	-0.8
2,131,890	+		GFF2095	0.17	+0.2
2,131,890	+		GFF2095	0.17	-1.5
2,131,898	-		GFF2095	0.18	+1.1
2,131,899	+		GFF2095	0.18	-1.3
2,131,950	-		GFF2095	0.24	+1.0
2,131,953	+		GFF2095	0.24	+0.3
2,131,961	-		GFF2095	0.25	-0.0
2,131,966	+		GFF2095	0.26	-0.4
2,132,008	+		GFF2095	0.31	-1.9
2,132,044	+		GFF2095	0.35	+0.7
2,132,045	-		GFF2095	0.35	+0.4
2,132,053	+		GFF2095	0.36	+0.0
2,132,053	+		GFF2095	0.36	-0.5
2,132,053	+		GFF2095	0.36	-0.3
2,132,053	+		GFF2095	0.36	+0.7
2,132,053	+		GFF2095	0.36	-1.4
2,132,061	-		GFF2095	0.37	-0.6
2,132,061	-		GFF2095	0.37	-0.6
2,132,061	-		GFF2095	0.37	+0.2
2,132,061	-		GFF2095	0.37	+0.7
2,132,063	+		GFF2095	0.37	-0.6
2,132,063	+		GFF2095	0.37	-1.7
2,132,063	+		GFF2095	0.37	-0.3
2,132,063	+		GFF2095	0.37	-1.6
2,132,063	+		GFF2095	0.37	-0.9
2,132,063	+		GFF2095	0.37	+1.1
2,132,063	+		GFF2095	0.37	+0.8
2,132,063	+		GFF2095	0.37	+0.1
2,132,063	+		GFF2095	0.37	-1.9
2,132,071	-		GFF2095	0.38	-0.2
2,132,080	+		GFF2095	0.39	-0.1
2,132,080	-		GFF2095	0.39	-2.0
2,132,105	-		GFF2095	0.42	+0.3
2,132,152	+		GFF2095	0.48	-1.1
2,132,153	+		GFF2095	0.48	-1.3
2,132,161	-		GFF2095	0.49	+0.2
2,132,161	-		GFF2095	0.49	-0.5
2,132,169	-		GFF2095	0.50	+0.5
2,132,171	-		GFF2095	0.50	+0.2
2,132,386	+		GFF2095	0.76	-0.3
2,132,386	+		GFF2095	0.76	-1.4
2,132,394	-		GFF2095	0.76	+1.2
2,132,440	+		GFF2095	0.82	+0.5
2,132,440	-		GFF2095	0.82	+0.5
2,132,446	-		GFF2095	0.83	-0.2
2,132,448	-		GFF2095	0.83	-1.7
2,132,461	-		GFF2095	0.84	+0.6
2,132,463	-		GFF2095	0.85	-1.8
2,132,483	-		GFF2095	0.87	-1.3
2,132,493	-		GFF2095	0.88	-0.6
2,132,498	-		GFF2095	0.89	-0.1
2,132,503	-		GFF2095	0.89	-0.9
2,132,506	+		GFF2095	0.90	-1.8
2,132,511	+				-2.1
2,132,514	-				+0.7
2,132,523	+				+1.9
2,132,523	+				-0.3
2,132,523	+				-0.5
2,132,523	+				-0.7
2,132,523	+				-0.7
2,132,524	-				-0.2
2,132,531	-				+0.4
2,132,531	-				-0.4
2,132,531	-				+1.0
2,132,531	-				-1.0
2,132,531	-				-1.8
2,132,531	-				-0.0
2,132,531	-				+0.2
2,132,531	-				-0.1
2,132,531	-				-1.1
2,132,533	+				+0.4
2,132,536	-				+0.1
2,132,541	-				-2.6
2,132,542	+				+0.9
2,132,542	+				+0.2
2,132,550	-				+0.5
2,132,636	-				-0.3
2,132,637	+				+0.5
2,132,665	+		GFF2096	0.29	+0.3
2,132,668	-		GFF2096	0.32	-1.2
2,132,668	-		GFF2096	0.32	+1.2
2,132,687	+		GFF2096	0.47	+0.4
2,132,697	+		GFF2096	0.56	-0.8
2,132,705	+		GFF2096	0.62	-0.5
2,132,734	+		GFF2096	0.87	+0.0
2,132,744	+				-0.7
2,132,772	-				+1.1
2,132,805	-				-1.3
2,132,805	-				-1.6
2,132,817	+				+0.7
2,132,836	-				-0.7
2,132,845	+				-1.6
2,132,845	+				-2.2
2,132,845	+				-0.9
2,132,845	+				-2.2
2,132,853	-				-1.0
2,132,853	-				-0.5
2,132,868	-				-0.6
2,132,868	-				+0.3
2,132,888	+				-0.5
2,132,888	+				-0.3
2,132,891	-				-1.3
2,132,893	+				-0.9
2,132,896	-				-1.6
2,132,898	+				-0.2
2,132,901	-				+0.3
2,132,901	-				-1.0
2,132,906	-				-0.8
2,132,943	+				-0.0
2,132,969	+		GFF2097	0.12	+0.2
2,132,977	-		GFF2097	0.13	+2.2
2,132,980	+		GFF2097	0.13	-1.4
2,133,007	+		GFF2097	0.16	+1.7
2,133,023	+		GFF2097	0.17	-0.3
2,133,073	+		GFF2097	0.22	+0.1
2,133,081	-		GFF2097	0.23	-0.9
2,133,091	-		GFF2097	0.24	-1.4
2,133,093	+		GFF2097	0.24	+0.7
2,133,101	-		GFF2097	0.25	+0.6
2,133,103	-		GFF2097	0.25	-0.9
2,133,147	-		GFF2097	0.29	-1.3
2,133,177	-		GFF2097	0.32	-1.1
2,133,194	+		GFF2097	0.34	+0.1
2,133,194	+		GFF2097	0.34	-1.9
2,133,194	+		GFF2097	0.34	+0.7
2,133,194	+		GFF2097	0.34	-0.8
2,133,194	+		GFF2097	0.34	-0.3
2,133,194	+		GFF2097	0.34	+0.1
2,133,194	+		GFF2097	0.34	-0.1
2,133,194	+		GFF2097	0.34	+1.3
2,133,202	-		GFF2097	0.34	+0.1
2,133,202	-		GFF2097	0.34	-0.8
2,133,202	-		GFF2097	0.34	-1.7
2,133,202	-		GFF2097	0.34	+1.1
2,133,202	-		GFF2097	0.34	-0.7
2,133,202	-		GFF2097	0.34	-0.2
2,133,202	-		GFF2097	0.34	+0.3
2,133,202	-		GFF2097	0.34	-0.8
2,133,202	-		GFF2097	0.34	+0.8
2,133,202	-		GFF2097	0.34	+1.2
2,133,202	-		GFF2097	0.34	-0.5
2,133,202	-		GFF2097	0.34	-0.6
2,133,202	-		GFF2097	0.34	+0.1
2,133,202	-		GFF2097	0.34	+1.0
2,133,227	+		GFF2097	0.37	+1.4
2,133,245	+		GFF2097	0.38	-2.1
2,133,245	+		GFF2097	0.38	-1.2
2,133,253	-		GFF2097	0.39	-1.4
2,133,269	+		GFF2097	0.41	-0.3
2,133,276	+		GFF2097	0.41	-0.5
2,133,314	+		GFF2097	0.45	+0.8
2,133,314	+		GFF2097	0.45	+1.1
2,133,317	-		GFF2097	0.45	-0.2
2,133,320	-		GFF2097	0.46	+0.0
2,133,327	+		GFF2097	0.46	+1.0
2,133,338	+		GFF2097	0.47	-0.7
2,133,364	-		GFF2097	0.50	-0.2
2,133,364	-		GFF2097	0.50	-1.8
2,133,365	+		GFF2097	0.50	-1.4
2,133,366	+		GFF2097	0.50	-0.6
2,133,367	+		GFF2097	0.50	-1.3
2,133,367	+		GFF2097	0.50	-0.7
2,133,378	-		GFF2097	0.51	+1.7
2,133,419	-		GFF2097	0.55	+1.4
2,133,468	+		GFF2097	0.60	+0.9
2,133,478	+		GFF2097	0.61	-0.1
2,133,478	+		GFF2097	0.61	+0.2
2,133,481	-		GFF2097	0.61	-0.0
2,133,485	+		GFF2097	0.61	-1.3
2,133,485	+		GFF2097	0.61	-1.3
2,133,486	-		GFF2097	0.61	+1.1
2,133,486	-		GFF2097	0.61	+1.0
2,133,492	-		GFF2097	0.62	-1.5
2,133,501	+		GFF2097	0.63	-0.5
2,133,506	+		GFF2097	0.63	+0.1
2,133,514	-		GFF2097	0.64	+0.4
2,133,545	+		GFF2097	0.67	+1.0
2,133,557	-		GFF2097	0.68	-1.4
2,133,557	-		GFF2097	0.68	-2.3
2,133,574	+		GFF2097	0.70	-1.3
2,133,574	+		GFF2097	0.70	+0.3
2,133,574	+		GFF2097	0.70	+1.0
2,133,574	+		GFF2097	0.70	-0.5
2,133,580	-		GFF2097	0.70	+0.2
2,133,582	-		GFF2097	0.71	-1.1
2,133,582	-		GFF2097	0.71	+0.0
2,133,584	+		GFF2097	0.71	+1.3
2,133,589	+		GFF2097	0.71	-0.3
2,133,589	+		GFF2097	0.71	-0.3