Strain Fitness in Sphingobium sp. HT1-2 around GFF2079

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,114,773	+		GFF2077	0.79	-0.3
2,114,817	-		GFF2077	0.83	-0.7
2,114,898	-				-0.3
2,114,978	-				-0.6
2,115,010	-				-0.3
2,115,033	-				-2.2
2,115,034	-				-0.5
2,115,076	+				+0.5
2,115,167	-				+0.4
2,115,232	-				-0.6
2,115,237	-				+0.7
2,115,237	-				-0.9
2,115,242	-				-1.3
2,115,546	-				-1.2
2,115,602	+				-1.6
2,115,610	-				+0.6
2,115,626	-				-0.6
2,115,670	-				-1.0
2,115,727	-				-0.6
2,115,742	+				-1.2
2,115,742	+				-1.0
2,115,750	-				-0.5
2,115,750	-				-1.7
2,115,750	-				-0.5
2,115,750	-				-1.4
2,115,752	+				-1.0
2,115,757	+				-1.0
2,115,803	+		GFF2079	0.13	+1.0
2,115,811	-		GFF2079	0.14	-0.5
2,115,811	-		GFF2079	0.14	-0.3
2,115,880	+		GFF2079	0.19	-0.9
2,115,888	-		GFF2079	0.20	-0.9
2,115,888	-		GFF2079	0.20	-1.0
2,115,923	-		GFF2079	0.23	-0.8
2,115,923	-		GFF2079	0.23	-0.3
2,115,934	+		GFF2079	0.24	-0.3
2,115,976	-		GFF2079	0.27	-0.3
2,115,989	-		GFF2079	0.28	-0.3
2,115,997	-		GFF2079	0.29	-1.5
2,116,025	-		GFF2079	0.31	-0.3
2,116,122	+		GFF2079	0.38	-0.5
2,116,136	-		GFF2079	0.39	-0.7
2,116,177	+		GFF2079	0.43	-1.2
2,116,177	+		GFF2079	0.43	-0.7
2,116,185	-		GFF2079	0.43	-0.8
2,116,185	-		GFF2079	0.43	-1.3
2,116,185	-		GFF2079	0.43	-1.6
2,116,185	-		GFF2079	0.43	-0.6
2,116,311	+		GFF2079	0.53	-1.0
2,116,319	-		GFF2079	0.54	-0.9
2,116,334	-		GFF2079	0.55	-0.7
2,116,365	+		GFF2079	0.57	-0.8
2,116,479	+		GFF2079	0.66	-1.2
2,116,569	+		GFF2079	0.73	-0.9
2,116,590	-		GFF2079	0.75	-1.4
2,116,592	+		GFF2079	0.75	-0.6
2,116,604	+		GFF2079	0.76	-0.5
2,116,639	+		GFF2079	0.79	-1.0
2,116,720	+		GFF2079	0.85	-0.3
2,116,755	-		GFF2079	0.88	-0.6
2,116,794	+				-1.0
2,116,839	+				-1.5
2,116,839	+				-0.3
2,116,922	-				-1.0
2,116,927	-				-1.3
2,116,969	-				-1.7
2,116,974	+				-2.1
2,116,974	+				-0.9
2,116,982	-				+0.9
2,116,982	-				-0.7
2,116,982	-				-0.6
2,116,982	-				-0.8
2,116,982	-				+0.5
2,116,982	-				+0.0
2,116,982	-				+0.3
2,116,987	-				-1.5
2,116,991	+				-1.0
2,117,042	+				-2.2
2,117,055	-				+0.1
2,117,058	-				-0.8
2,117,074	+				-0.4
2,117,074	+				-1.6
2,117,074	+				+0.4
2,117,075	-				+0.4
2,117,075	-				+0.6
2,117,075	-				-0.9
2,117,075	-				-0.5
2,117,075	-				-1.4
2,117,076	-				+0.2
2,117,082	-				-1.1
2,117,082	-				-1.4
2,117,082	-				-1.0
2,117,082	-				-2.0
2,117,082	-				-0.1
2,117,091	-				-0.4
2,117,113	+				-0.9
2,117,113	+				-2.1
2,117,114	-				+0.5
2,117,121	-				+0.0
2,117,121	-				+0.2
2,117,121	-				-0.7
2,117,124	+				-1.0
2,117,132	-				-2.0
2,117,144	-				+0.7
2,117,201	-		GFF2080	0.11	-1.0
2,117,214	+		GFF2080	0.13	-1.0
2,117,222	-		GFF2080	0.15	-0.7
2,117,222	-		GFF2080	0.15	-0.3
2,117,222	-		GFF2080	0.15	-0.4
2,117,222	-		GFF2080	0.15	-2.2
2,117,229	+		GFF2080	0.16	-0.7
2,117,237	-		GFF2080	0.17	+1.3
2,117,280	+		GFF2080	0.24	-0.1
2,117,291	+		GFF2080	0.26	-0.3
2,117,296	+		GFF2080	0.27	-0.5
2,117,296	+		GFF2080	0.27	-2.3
2,117,296	+		GFF2080	0.27	-0.5
2,117,296	+		GFF2080	0.27	+0.7
2,117,296	+		GFF2080	0.27	-1.2
2,117,296	+		GFF2080	0.27	+1.9
2,117,296	+		GFF2080	0.27	-1.4
2,117,296	+		GFF2080	0.27	-0.0
2,117,296	+		GFF2080	0.27	+0.4
2,117,296	+		GFF2080	0.27	-1.4
2,117,296	+		GFF2080	0.27	-1.9
2,117,296	+		GFF2080	0.27	+0.3
2,117,296	+		GFF2080	0.27	-0.4
2,117,301	+		GFF2080	0.28	-0.2
2,117,304	-		GFF2080	0.28	-0.6
2,117,304	-		GFF2080	0.28	-2.7
2,117,304	-		GFF2080	0.28	-2.0
2,117,304	-		GFF2080	0.28	-0.1
2,117,314	-		GFF2080	0.30	+0.2
2,117,314	-		GFF2080	0.30	-1.9
2,117,324	-		GFF2080	0.31	-0.6
2,117,333	-		GFF2080	0.33	-0.3
2,117,392	-		GFF2080	0.43	-1.4
2,117,400	-		GFF2080	0.44	-1.4
2,117,418	+		GFF2080	0.47	+0.2
2,117,419	+		GFF2080	0.47	-0.8
2,117,428	+		GFF2080	0.49	-1.4
2,117,450	+		GFF2080	0.52	-1.2
2,117,450	+		GFF2080	0.52	+0.7
2,117,450	+		GFF2080	0.52	+1.4
2,117,450	+		GFF2080	0.52	-0.8
2,117,457	+		GFF2080	0.53	-1.5
2,117,457	+		GFF2080	0.53	+0.1
2,117,457	+		GFF2080	0.53	-1.1
2,117,457	+		GFF2080	0.53	+0.3
2,117,457	+		GFF2080	0.53	+0.6
2,117,458	-		GFF2080	0.53	-1.9
2,117,463	+		GFF2080	0.54	-0.8
2,117,465	-		GFF2080	0.55	-0.7
2,117,465	-		GFF2080	0.55	-0.5
2,117,465	-		GFF2080	0.55	+0.5
2,117,465	-		GFF2080	0.55	-0.9
2,117,468	+		GFF2080	0.55	-1.7
2,117,476	+		GFF2080	0.56	+0.2
2,117,476	+		GFF2080	0.56	-0.3
2,117,476	+		GFF2080	0.56	-0.6
2,117,484	-		GFF2080	0.58	+0.2
2,117,494	-		GFF2080	0.59	-1.2
2,117,495	-		GFF2080	0.60	-0.5
2,117,507	+		GFF2080	0.62	-0.5
2,117,508	-		GFF2080	0.62	-0.7
2,117,530	-		GFF2080	0.65	-1.0
2,117,530	-		GFF2080	0.65	-0.8
2,117,542	+		GFF2080	0.67	-1.2
2,117,542	-		GFF2080	0.67	-1.3
2,117,593	+		GFF2080	0.76	+0.2
2,117,654	+		GFF2080	0.86	+0.6
2,117,667	-		GFF2080	0.88	+1.0
2,117,690	+				-0.4
2,117,728	+				-0.8
2,117,741	-				-0.2
2,117,741	-				-1.2
2,117,756	-				+0.5
2,117,777	+				+1.1
2,117,780	-				-2.0
2,117,843	+		GFF2081	0.10	+0.7
2,117,851	-		GFF2081	0.12	-1.7
2,117,859	+		GFF2081	0.14	+0.5
2,117,882	-		GFF2081	0.21	+0.5
2,117,885	+		GFF2081	0.21	+0.2
2,117,885	+		GFF2081	0.21	-0.2
2,117,885	+		GFF2081	0.21	-0.9
2,117,885	+		GFF2081	0.21	-1.3
2,117,885	+		GFF2081	0.21	+0.3
2,117,885	+		GFF2081	0.21	+0.4
2,117,885	+		GFF2081	0.21	-1.3
2,117,885	+		GFF2081	0.21	+1.3
2,117,885	+		GFF2081	0.21	-0.1
2,117,885	+		GFF2081	0.21	-1.8
2,117,885	+		GFF2081	0.21	-0.3
2,117,885	+		GFF2081	0.21	-0.0
2,117,885	+		GFF2081	0.21	-1.3
2,117,885	+		GFF2081	0.21	-1.9
2,117,885	+		GFF2081	0.21	-0.5
2,117,885	+		GFF2081	0.21	-0.9
2,117,885	+		GFF2081	0.21	-0.8
2,117,885	+		GFF2081	0.21	-1.1
2,117,885	+		GFF2081	0.21	-0.7
2,117,885	+		GFF2081	0.21	-0.4
2,117,885	+		GFF2081	0.21	+0.3
2,117,885	+		GFF2081	0.21	+1.3
2,117,885	+		GFF2081	0.21	+1.6
2,117,893	-		GFF2081	0.23	+0.0
2,117,893	-		GFF2081	0.23	-1.2
2,117,893	-		GFF2081	0.23	+0.4
2,117,893	-		GFF2081	0.23	-1.3
2,117,893	-		GFF2081	0.23	-0.3
2,117,893	-		GFF2081	0.23	-0.8
2,117,893	-		GFF2081	0.23	-1.4
2,117,893	-		GFF2081	0.23	+1.0
2,117,893	-		GFF2081	0.23	-0.1
2,117,893	-		GFF2081	0.23	-1.2
2,117,893	-		GFF2081	0.23	-2.4
2,117,893	-		GFF2081	0.23	+0.4
2,117,893	-		GFF2081	0.23	+0.4
2,117,905	+		GFF2081	0.27	+1.1