Strain Fitness in Sphingobium sp. HT1-2 around GFF2064

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,101,382	-				-2.0
2,101,382	-				+0.4
2,101,389	+				-0.5
2,101,389	+				+0.3
2,101,413	-				+1.5
2,101,432	+				+0.3
2,101,440	-				+1.8
2,101,489	-				-0.0
2,101,544	-				-2.2
2,101,552	-				-0.8
2,101,554	-				+0.5
2,101,563	+				-0.9
2,101,571	+				-1.2
2,101,571	+				+1.3
2,101,571	+				+0.4
2,101,571	+				+0.1
2,101,571	+				-1.5
2,101,571	+				-0.6
2,101,579	-				-0.8
2,101,579	-				-1.2
2,101,596	-		GFF2063	0.10	-0.8
2,101,624	-		GFF2063	0.14	+0.5
2,101,629	+		GFF2063	0.14	-1.3
2,101,629	-		GFF2063	0.14	+0.1
2,101,657	-		GFF2063	0.18	+0.4
2,101,657	-		GFF2063	0.18	+0.3
2,101,657	-		GFF2063	0.18	-1.7
2,101,661	-		GFF2063	0.19	+0.1
2,101,670	+		GFF2063	0.20	+1.4
2,101,670	+		GFF2063	0.20	-1.5
2,101,671	+		GFF2063	0.20	+0.3
2,101,678	-		GFF2063	0.21	-1.3
2,101,678	-		GFF2063	0.21	-1.9
2,101,679	-		GFF2063	0.21	+0.3
2,101,679	-		GFF2063	0.21	-0.6
2,101,700	-		GFF2063	0.24	+0.7
2,101,718	+		GFF2063	0.26	-0.6
2,101,718	+		GFF2063	0.26	-0.7
2,101,718	+		GFF2063	0.26	-0.6
2,101,718	+		GFF2063	0.26	+0.5
2,101,726	-		GFF2063	0.27	-0.7
2,101,738	+		GFF2063	0.29	-0.6
2,101,738	+		GFF2063	0.29	-0.2
2,101,740	+		GFF2063	0.29	-0.7
2,101,746	-		GFF2063	0.30	+1.0
2,101,746	-		GFF2063	0.30	-1.6
2,101,763	+		GFF2063	0.32	-1.8
2,101,763	+		GFF2063	0.32	-0.7
2,101,765	+		GFF2063	0.32	-1.9
2,101,771	-		GFF2063	0.33	+0.5
2,101,771	-		GFF2063	0.33	-1.1
2,101,771	-		GFF2063	0.33	-0.1
2,101,772	+		GFF2063	0.33	+0.2
2,101,773	-		GFF2063	0.33	-1.6
2,101,773	-		GFF2063	0.33	-0.0
2,101,773	-		GFF2063	0.33	+0.3
2,101,798	+		GFF2063	0.36	-1.4
2,101,806	-		GFF2063	0.38	+0.4
2,101,806	-		GFF2063	0.38	-1.6
2,101,806	-		GFF2063	0.38	-0.3
2,101,820	+		GFF2063	0.39	-0.4
2,101,820	+		GFF2063	0.39	+0.2
2,101,820	+		GFF2063	0.39	-1.9
2,101,820	+		GFF2063	0.39	+0.3
2,101,820	+		GFF2063	0.39	-0.5
2,101,820	+		GFF2063	0.39	-0.1
2,101,820	+		GFF2063	0.39	+0.1
2,101,820	+		GFF2063	0.39	+0.2
2,101,820	+		GFF2063	0.39	-0.0
2,101,820	+		GFF2063	0.39	+0.9
2,101,820	+		GFF2063	0.39	-0.3
2,101,820	+		GFF2063	0.39	-0.2
2,101,821	+		GFF2063	0.39	-1.5
2,101,828	-		GFF2063	0.40	-1.2
2,101,828	-		GFF2063	0.40	-1.8
2,101,828	-		GFF2063	0.40	-0.5
2,101,828	-		GFF2063	0.40	-0.6
2,101,828	-		GFF2063	0.40	-0.8
2,101,828	-		GFF2063	0.40	-0.6
2,101,828	-		GFF2063	0.40	+0.2
2,101,828	-		GFF2063	0.40	+0.2
2,101,828	-		GFF2063	0.40	+0.1
2,101,828	-		GFF2063	0.40	-0.1
2,101,828	-		GFF2063	0.40	-1.3
2,101,828	-		GFF2063	0.40	-0.1
2,101,828	-		GFF2063	0.40	-1.2
2,101,828	-		GFF2063	0.40	-0.0
2,101,829	-		GFF2063	0.40	+0.2
2,101,874	-		GFF2063	0.46	-0.2
2,101,874	-		GFF2063	0.46	-1.3
2,101,894	-		GFF2063	0.49	-1.0
2,101,904	-		GFF2063	0.50	-0.3
2,101,918	-		GFF2063	0.52	-1.7
2,101,932	-		GFF2063	0.54	-0.6
2,101,936	+		GFF2063	0.54	+0.7
2,101,953	+		GFF2063	0.57	-1.1
2,101,990	+		GFF2063	0.61	-2.0
2,101,999	-		GFF2063	0.63	-1.4
2,102,016	+		GFF2063	0.65	-2.0
2,102,017	-		GFF2063	0.65	+0.2
2,102,022	-		GFF2063	0.66	+1.0
2,102,022	-		GFF2063	0.66	-1.5
2,102,024	-		GFF2063	0.66	-0.2
2,102,024	-		GFF2063	0.66	-1.3
2,102,024	-		GFF2063	0.66	-1.0
2,102,029	-		GFF2063	0.67	-1.2
2,102,029	-		GFF2063	0.67	-0.3
2,102,035	-		GFF2063	0.67	-1.0
2,102,040	+		GFF2063	0.68	-0.3
2,102,074	+		GFF2063	0.72	-1.5
2,102,084	-		GFF2063	0.74	-0.4
2,102,086	+		GFF2063	0.74	-0.3
2,102,096	+		GFF2063	0.75	-1.6
2,102,123	-		GFF2063	0.79	-0.5
2,102,127	+		GFF2063	0.79	+0.2
2,102,135	+		GFF2063	0.80	-1.4
2,102,135	+		GFF2063	0.80	+0.2
2,102,135	+		GFF2063	0.80	-1.2
2,102,135	+		GFF2063	0.80	+0.9
2,102,135	+		GFF2063	0.80	+0.8
2,102,140	+		GFF2063	0.81	-1.0
2,102,140	+		GFF2063	0.81	+0.1
2,102,140	+		GFF2063	0.81	+0.6
2,102,143	-		GFF2063	0.81	+0.5
2,102,143	-		GFF2063	0.81	-0.4
2,102,143	-		GFF2063	0.81	-0.7
2,102,143	-		GFF2063	0.81	-0.3
2,102,143	-		GFF2063	0.81	+0.8
2,102,143	-		GFF2063	0.81	-0.4
2,102,143	-		GFF2063	0.81	-0.5
2,102,143	-		GFF2063	0.81	+0.4
2,102,145	+		GFF2063	0.82	+0.5
2,102,145	+		GFF2063	0.82	-0.2
2,102,148	-		GFF2063	0.82	+0.5
2,102,153	-		GFF2063	0.83	-1.2
2,102,204	+		GFF2063	0.89	-0.8
2,102,204	+		GFF2063	0.89	-0.9
2,102,212	-				+1.0
2,102,212	-				-1.4
2,102,212	-				-0.2
2,102,212	-				-0.9
2,102,244	-				-0.8
2,102,249	+				-2.0
2,102,266	+				-0.8
2,102,277	+				-0.7
2,102,306	+				-1.8
2,102,319	-				+0.0
2,102,352	-				-1.8
2,102,393	-				+0.5
2,102,407	-		GFF2064	0.13	+0.2
2,102,407	-		GFF2064	0.13	+1.3
2,102,415	+		GFF2064	0.15	-1.2
2,102,420	+		GFF2064	0.16	+1.0
2,102,420	+		GFF2064	0.16	+0.3
2,102,425	+		GFF2064	0.18	-2.3
2,102,428	-		GFF2064	0.18	-0.6
2,102,428	-		GFF2064	0.18	-0.7
2,102,428	-		GFF2064	0.18	-0.9
2,102,451	+		GFF2064	0.24	-0.7
2,102,459	-		GFF2064	0.26	-1.0
2,102,461	+		GFF2064	0.27	+0.3
2,102,464	+		GFF2064	0.28	+1.1
2,102,500	+		GFF2064	0.37	-0.4
2,102,525	+		GFF2064	0.43	+0.6
2,102,538	-		GFF2064	0.47	+0.2
2,102,541	+		GFF2064	0.48	-1.3
2,102,684	-		GFF2064	0.84	-1.4
2,102,684	-		GFF2064	0.84	-1.6
2,102,721	+				-1.0
2,102,721	+				+0.1
2,102,729	-				-0.2
2,102,729	-				-0.3
2,102,747	-				-0.7
2,102,767	+				-0.8
2,102,780	-				-1.6
2,102,799	+				-0.8
2,102,807	-				-0.6
2,102,828	-				-0.5
2,102,836	+				+0.4
2,102,836	+				+0.3
2,102,839	-				+0.3
2,102,869	-		GFF2065	0.11	-0.7
2,102,877	+		GFF2065	0.12	-1.6
2,102,925	-		GFF2065	0.16	+1.2
2,102,926	+		GFF2065	0.16	-0.9
2,102,946	+		GFF2065	0.18	-1.6
2,102,946	+		GFF2065	0.18	-0.4
2,102,946	+		GFF2065	0.18	-1.6
2,102,946	+		GFF2065	0.18	-1.4
2,102,950	-		GFF2065	0.18	-0.4
2,102,954	-		GFF2065	0.18	-1.0
2,102,954	-		GFF2065	0.18	-0.3
2,102,960	-		GFF2065	0.19	-1.2
2,102,965	-		GFF2065	0.19	-0.8
2,102,970	-		GFF2065	0.20	+0.5
2,102,983	+		GFF2065	0.21	-1.7
2,102,986	-		GFF2065	0.21	+0.4
2,102,988	+		GFF2065	0.21	-0.9
2,102,988	+		GFF2065	0.21	+0.0
2,102,990	+		GFF2065	0.21	+1.4
2,102,991	-		GFF2065	0.21	-1.5
2,102,995	+		GFF2065	0.22	+0.2
2,102,995	+		GFF2065	0.22	-1.2
2,102,996	-		GFF2065	0.22	-1.0
2,102,998	-		GFF2065	0.22	-0.1
2,102,998	-		GFF2065	0.22	-0.0
2,102,998	-		GFF2065	0.22	+0.1
2,103,008	-		GFF2065	0.23	-1.5
2,103,012	+		GFF2065	0.23	+0.0
2,103,017	+		GFF2065	0.24	+0.3
2,103,047	-		GFF2065	0.26	-1.2
2,103,064	+		GFF2065	0.28	+1.0
2,103,072	-		GFF2065	0.28	+0.7
2,103,072	-		GFF2065	0.28	-0.1
2,103,072	-		GFF2065	0.28	+1.2
2,103,086	+		GFF2065	0.30	-1.8
2,103,094	-		GFF2065	0.30	-1.6
2,103,103	-		GFF2065	0.31	-0.9
2,103,113	-		GFF2065	0.32	-1.2
2,103,114	+		GFF2065	0.32	-0.6
2,103,114	+		GFF2065	0.32	-0.5
2,103,142	+		GFF2065	0.34	+0.0
2,103,149	+		GFF2065	0.35	-0.3
2,103,168	+		GFF2065	0.37	+1.5
2,103,197	-		GFF2065	0.39	-0.6
2,103,202	+		GFF2065	0.40	-0.6
2,103,202	+		GFF2065	0.40	-0.9
2,103,202	+		GFF2065	0.40	-0.1
2,103,202	+		GFF2065	0.40	-0.4
2,103,202	+		GFF2065	0.40	-2.0
2,103,202	+		GFF2065	0.40	-0.9
2,103,207	+		GFF2065	0.40	+1.0
2,103,208	-		GFF2065	0.40	-0.8
2,103,210	-		GFF2065	0.40	-0.3
2,103,210	-		GFF2065	0.40	+1.0
2,103,210	-		GFF2065	0.40	-0.7
2,103,210	-		GFF2065	0.40	-1.3
2,103,210	-		GFF2065	0.40	-0.8
2,103,215	-		GFF2065	0.41	-0.1
2,103,215	-		GFF2065	0.41	-1.2
2,103,215	-		GFF2065	0.41	-0.2
2,103,230	-		GFF2065	0.42	+0.7
2,103,231	+		GFF2065	0.42	-1.3
2,103,232	+		GFF2065	0.42	-0.7
2,103,235	-		GFF2065	0.42	-0.9
2,103,245	-		GFF2065	0.43	-1.2
2,103,245	-		GFF2065	0.43	+0.1
2,103,245	-		GFF2065	0.43	-0.8
2,103,254	+		GFF2065	0.44	+0.4
2,103,259	+		GFF2065	0.45	+0.3
2,103,267	-		GFF2065	0.45	-0.6
2,103,289	-		GFF2065	0.47	+0.8
2,103,308	-		GFF2065	0.49	-0.8
2,103,318	+		GFF2065	0.50	+0.9
2,103,339	-		GFF2065	0.51	+0.1
2,103,351	+		GFF2065	0.53	-2.3
2,103,351	+		GFF2065	0.53	+0.8
2,103,351	+		GFF2065	0.53	+0.1
2,103,351	+		GFF2065	0.53	+0.0
2,103,351	+		GFF2065	0.53	+0.4
2,103,359	-		GFF2065	0.53	+0.2
2,103,359	-		GFF2065	0.53	-0.9
2,103,359	-		GFF2065	0.53	-1.0
2,103,361	-		GFF2065	0.53	-1.9
2,103,367	+		GFF2065	0.54	+0.2
2,103,385	+		GFF2065	0.55	-1.0
2,103,390	+		GFF2065	0.56	-0.2
2,103,392	+		GFF2065	0.56	-0.5
2,103,392	+		GFF2065	0.56	-1.8
2,103,392	+		GFF2065	0.56	+0.5
2,103,392	+		GFF2065	0.56	-2.1
2,103,392	+		GFF2065	0.56	-0.8
2,103,398	+		GFF2065	0.57	+0.3
2,103,400	-		GFF2065	0.57	+0.7
2,103,400	-		GFF2065	0.57	-1.0
2,103,400	-		GFF2065	0.57	-0.9
2,103,400	-		GFF2065	0.57	+0.5
2,103,400	-		GFF2065	0.57	+0.4
2,103,400	-		GFF2065	0.57	+0.0
2,103,405	-		GFF2065	0.57	-2.2
2,103,416	-		GFF2065	0.58	-0.2
2,103,427	+		GFF2065	0.59	-1.5
2,103,448	+		GFF2065	0.61	-1.2
2,103,448	-		GFF2065	0.61	+0.8
2,103,456	-		GFF2065	0.62	-0.1
2,103,456	-		GFF2065	0.62	-1.2
2,103,460	-		GFF2065	0.62	-0.2
2,103,463	-		GFF2065	0.62	+0.7
2,103,487	-		GFF2065	0.64	+1.3
2,103,489	+		GFF2065	0.64	-3.1
2,103,497	-		GFF2065	0.65	-0.1
2,103,498	-		GFF2065	0.65	-1.6
2,103,533	+		GFF2065	0.68	+0.5
2,103,541	-		GFF2065	0.69	-1.7
2,103,541	-		GFF2065	0.69	-0.7
2,103,541	-		GFF2065	0.69	-1.9
2,103,548	+		GFF2065	0.70	-0.8
2,103,548	+		GFF2065	0.70	-0.8
2,103,556	-		GFF2065	0.70	-1.5
2,103,570	+		GFF2065	0.71	-1.0
2,103,570	+		GFF2065	0.71	-0.7
2,103,572	+		GFF2065	0.72	-0.3
2,103,572	+		GFF2065	0.72	+0.3
2,103,572	+		GFF2065	0.72	-0.3
2,103,578	-		GFF2065	0.72	-1.2
2,103,580	-		GFF2065	0.72	-1.3
2,103,618	+		GFF2065	0.76	-0.3
2,103,626	-		GFF2065	0.76	-1.4
2,103,630	-		GFF2065	0.77	+0.6
2,103,660	+		GFF2065	0.79	+0.1
2,103,660	+		GFF2065	0.79	+1.0
2,103,668	-		GFF2065	0.80	+0.3
2,103,668	-		GFF2065	0.80	-3.0
2,103,693	-		GFF2065	0.82	-1.2
2,103,694	-		GFF2065	0.82	+0.0
2,103,704	-		GFF2065	0.83	-0.5
2,103,729	+		GFF2065	0.85	-0.1
2,103,734	+		GFF2065	0.86	-0.3
2,103,742	-		GFF2065	0.86	-0.1