Strain Fitness in Sphingobium sp. HT1-2 around GFF2054

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,090,560	+				+1.0
2,090,573	-				-0.4
2,090,596	-		GFF2053	0.12	-0.3
2,090,609	+		GFF2053	0.13	+1.3
2,090,609	+		GFF2053	0.13	-0.3
2,090,609	+		GFF2053	0.13	-0.6
2,090,609	+		GFF2053	0.13	-0.6
2,090,609	+		GFF2053	0.13	-0.3
2,090,609	+		GFF2053	0.13	-0.7
2,090,617	-		GFF2053	0.14	-1.8
2,090,617	-		GFF2053	0.14	-0.1
2,090,654	+		GFF2053	0.18	+0.7
2,090,700	+		GFF2053	0.23	-0.3
2,090,700	+		GFF2053	0.23	-0.7
2,090,700	+		GFF2053	0.23	+1.4
2,090,700	+		GFF2053	0.23	+0.2
2,090,700	+		GFF2053	0.23	+0.3
2,090,708	-		GFF2053	0.24	-0.7
2,090,730	+		GFF2053	0.27	-1.3
2,090,730	+		GFF2053	0.27	-0.9
2,090,733	-		GFF2053	0.27	+1.1
2,090,738	-		GFF2053	0.27	-1.0
2,090,738	-		GFF2053	0.27	-0.4
2,090,808	+		GFF2053	0.35	-1.0
2,090,846	-		GFF2053	0.39	-0.9
2,090,904	+		GFF2053	0.45	-1.3
2,090,912	-		GFF2053	0.46	+0.2
2,090,974	+		GFF2053	0.53	-1.3
2,091,104	-		GFF2053	0.67	-0.3
2,091,152	+		GFF2053	0.72	-0.4
2,091,169	+		GFF2053	0.74	-0.3
2,091,178	-		GFF2053	0.75	-0.8
2,091,333	+				-0.8
2,091,347	-				-0.1
2,091,347	-				-1.0
2,091,433	+				+0.8
2,091,434	+				+0.0
2,091,442	-				-0.3
2,091,442	-				-1.6
2,091,455	-				-1.0
2,091,471	+				+0.7
2,091,471	+				+1.0
2,091,471	+				-1.0
2,091,471	+				-0.7
2,091,471	+				-3.1
2,091,471	+				+0.6
2,091,479	-				-1.4
2,091,479	-				-1.2
2,091,479	-				-2.3
2,091,538	+				-0.6
2,091,546	-				-0.1
2,091,546	-				-1.7
2,091,550	+				-1.0
2,091,550	+				-0.4
2,091,559	+				-1.0
2,091,586	-				-0.4
2,091,592	+				-2.2
2,091,596	-				+0.9
2,091,605	-				-0.4
2,091,633	-				-1.7
2,091,633	-				-1.7
2,091,640	+				-0.6
2,091,658	-				-2.0
2,091,670	+				-1.4
2,091,686	+				-1.8
2,091,691	+		GFF2054	0.10	-0.9
2,091,692	+		GFF2054	0.10	-1.3
2,091,692	+		GFF2054	0.10	-1.1
2,091,696	+		GFF2054	0.10	-1.1
2,091,699	-		GFF2054	0.11	-2.0
2,091,699	-		GFF2054	0.11	-1.3
2,091,704	-		GFF2054	0.11	-2.0
2,091,715	+		GFF2054	0.11	-1.8
2,091,715	+		GFF2054	0.11	-2.5
2,091,725	+		GFF2054	0.12	-1.8
2,091,725	+		GFF2054	0.12	-0.9
2,091,730	+		GFF2054	0.12	-1.3
2,091,733	-		GFF2054	0.12	-0.8
2,091,733	-		GFF2054	0.12	-0.6
2,091,735	+		GFF2054	0.13	-1.8
2,091,735	+		GFF2054	0.13	-2.1
2,091,735	+		GFF2054	0.13	-1.5
2,091,735	+		GFF2054	0.13	-1.7
2,091,735	+		GFF2054	0.13	-0.9
2,091,735	+		GFF2054	0.13	-0.3
2,091,738	-		GFF2054	0.13	-1.9
2,091,741	+		GFF2054	0.13	-1.0
2,091,743	-		GFF2054	0.13	-2.4
2,091,751	+		GFF2054	0.13	-1.7
2,091,760	-		GFF2054	0.14	-1.0
2,091,774	+		GFF2054	0.15	-0.5
2,091,787	+		GFF2054	0.16	-1.2
2,091,808	+		GFF2054	0.17	-0.6
2,091,815	+		GFF2054	0.17	-4.5
2,091,823	-		GFF2054	0.18	-0.6
2,091,823	-		GFF2054	0.18	-1.0
2,091,823	-		GFF2054	0.18	-1.0
2,091,828	-		GFF2054	0.18	-1.5
2,091,835	+		GFF2054	0.18	-1.6
2,091,835	+		GFF2054	0.18	-1.3
2,091,869	+		GFF2054	0.20	-1.3
2,091,883	+		GFF2054	0.21	-0.5
2,091,883	+		GFF2054	0.21	-3.0
2,091,883	+		GFF2054	0.21	-2.8
2,091,883	+		GFF2054	0.21	-1.5
2,091,883	+		GFF2054	0.21	-1.6
2,091,888	+		GFF2054	0.21	-1.2
2,091,891	-		GFF2054	0.21	-1.9
2,091,891	-		GFF2054	0.21	-2.5
2,091,891	-		GFF2054	0.21	-1.0
2,091,891	-		GFF2054	0.21	-2.4
2,091,891	-		GFF2054	0.21	-0.9
2,091,891	-		GFF2054	0.21	-2.6
2,091,891	-		GFF2054	0.21	-0.7
2,091,891	-		GFF2054	0.21	-1.7
2,091,891	-		GFF2054	0.21	-1.3
2,091,895	+		GFF2054	0.22	-1.2
2,091,896	-		GFF2054	0.22	-0.7
2,091,896	-		GFF2054	0.22	-2.2
2,091,910	+		GFF2054	0.23	-2.0
2,091,928	+		GFF2054	0.24	-2.3
2,091,928	+		GFF2054	0.24	-1.6
2,091,928	+		GFF2054	0.24	-2.5
2,091,936	-		GFF2054	0.24	-1.9
2,091,936	-		GFF2054	0.24	-1.5
2,091,936	-		GFF2054	0.24	-0.3
2,091,955	-		GFF2054	0.25	-1.8
2,091,963	+		GFF2054	0.26	-1.3
2,091,980	-		GFF2054	0.27	-0.8
2,092,019	+		GFF2054	0.29	-1.8
2,092,025	+		GFF2054	0.29	-2.3
2,092,025	+		GFF2054	0.29	-1.1
2,092,025	+		GFF2054	0.29	-1.6
2,092,025	+		GFF2054	0.29	-3.1
2,092,033	-		GFF2054	0.30	-1.4
2,092,036	+		GFF2054	0.30	-1.8
2,092,043	+		GFF2054	0.30	-2.0
2,092,051	-		GFF2054	0.31	-0.6
2,092,057	-		GFF2054	0.31	-1.3
2,092,059	+		GFF2054	0.31	-0.6
2,092,067	-		GFF2054	0.32	-1.9
2,092,082	-		GFF2054	0.32	-1.2
2,092,138	-		GFF2054	0.36	-0.7
2,092,146	-		GFF2054	0.36	-1.3
2,092,146	-		GFF2054	0.36	-1.7
2,092,146	-		GFF2054	0.36	-1.3
2,092,155	-		GFF2054	0.37	-0.8
2,092,167	-		GFF2054	0.37	-1.7
2,092,172	+		GFF2054	0.38	-0.5
2,092,172	+		GFF2054	0.38	-1.9
2,092,172	+		GFF2054	0.38	-0.8
2,092,177	+		GFF2054	0.38	-1.5
2,092,177	+		GFF2054	0.38	-1.4
2,092,177	+		GFF2054	0.38	-1.6
2,092,177	-		GFF2054	0.38	-2.1
2,092,180	-		GFF2054	0.38	-1.2
2,092,182	+		GFF2054	0.38	-0.5
2,092,185	-		GFF2054	0.38	-1.0
2,092,185	-		GFF2054	0.38	-1.5
2,092,189	+		GFF2054	0.38	-0.5
2,092,213	-		GFF2054	0.40	-1.7
2,092,227	+		GFF2054	0.41	-1.5
2,092,227	+		GFF2054	0.41	-0.8
2,092,227	+		GFF2054	0.41	-0.3
2,092,227	+		GFF2054	0.41	-1.1
2,092,228	-		GFF2054	0.41	-2.8
2,092,232	+		GFF2054	0.41	-2.2
2,092,232	+		GFF2054	0.41	-1.6
2,092,232	+		GFF2054	0.41	-1.8
2,092,232	+		GFF2054	0.41	-0.3
2,092,235	-		GFF2054	0.41	-1.8
2,092,235	-		GFF2054	0.41	-1.9
2,092,241	+		GFF2054	0.41	-3.2
2,092,249	-		GFF2054	0.42	-2.8
2,092,249	-		GFF2054	0.42	-1.9
2,092,249	-		GFF2054	0.42	-1.4
2,092,250	-		GFF2054	0.42	-2.4
2,092,263	+		GFF2054	0.43	-1.7
2,092,263	+		GFF2054	0.43	-1.8
2,092,263	+		GFF2054	0.43	-2.5
2,092,271	-		GFF2054	0.43	-1.7
2,092,324	+		GFF2054	0.46	-2.4
2,092,334	+		GFF2054	0.47	-3.2
2,092,334	+		GFF2054	0.47	-1.9
2,092,334	+		GFF2054	0.47	-2.0
2,092,335	+		GFF2054	0.47	-1.0
2,092,335	+		GFF2054	0.47	-2.0
2,092,342	+		GFF2054	0.47	+0.3
2,092,342	-		GFF2054	0.47	-2.6
2,092,392	-		GFF2054	0.50	-1.0
2,092,392	-		GFF2054	0.50	-1.7
2,092,392	-		GFF2054	0.50	-1.0
2,092,393	-		GFF2054	0.50	+0.9
2,092,400	-		GFF2054	0.51	-2.3
2,092,413	-		GFF2054	0.51	-1.3
2,092,415	-		GFF2054	0.51	+0.9
2,092,423	-		GFF2054	0.52	+0.0
2,092,423	-		GFF2054	0.52	-0.6
2,092,423	-		GFF2054	0.52	-0.7
2,092,423	-		GFF2054	0.52	-2.4
2,092,431	+		GFF2054	0.52	-1.2
2,092,452	-		GFF2054	0.53	-1.0
2,092,483	+		GFF2054	0.55	-1.7
2,092,489	-		GFF2054	0.56	-0.9
2,092,501	-		GFF2054	0.56	-1.2
2,092,506	+		GFF2054	0.57	-0.8
2,092,514	-		GFF2054	0.57	-1.9
2,092,515	+		GFF2054	0.57	-0.3
2,092,538	-		GFF2054	0.58	+1.4
2,092,538	-		GFF2054	0.58	-2.1
2,092,554	-		GFF2054	0.59	-1.9
2,092,579	-		GFF2054	0.61	-0.5
2,092,589	-		GFF2054	0.61	-0.3
2,092,597	+		GFF2054	0.62	-2.0
2,092,597	+		GFF2054	0.62	-1.1
2,092,597	+		GFF2054	0.62	-1.3
2,092,597	+		GFF2054	0.62	-3.4
2,092,600	-		GFF2054	0.62	-0.5
2,092,600	-		GFF2054	0.62	-1.3
2,092,605	-		GFF2054	0.62	-0.3
2,092,605	-		GFF2054	0.62	-0.3
2,092,648	+		GFF2054	0.65	-1.1
2,092,648	+		GFF2054	0.65	-1.0
2,092,651	+		GFF2054	0.65	-2.6
2,092,651	+		GFF2054	0.65	-0.6
2,092,651	+		GFF2054	0.65	-2.3
2,092,651	+		GFF2054	0.65	-0.9
2,092,651	+		GFF2054	0.65	-0.7
2,092,656	-		GFF2054	0.65	-0.5
2,092,656	-		GFF2054	0.65	-2.2
2,092,659	-		GFF2054	0.65	-1.1
2,092,659	-		GFF2054	0.65	-1.8
2,092,659	-		GFF2054	0.65	-1.9
2,092,673	+		GFF2054	0.66	-1.5
2,092,692	+		GFF2054	0.67	-1.0
2,092,709	+		GFF2054	0.68	-1.2
2,092,709	+		GFF2054	0.68	-2.1
2,092,709	+		GFF2054	0.68	-1.2
2,092,714	+		GFF2054	0.68	-0.8
2,092,717	-		GFF2054	0.69	-1.7
2,092,722	-		GFF2054	0.69	-1.8
2,092,722	-		GFF2054	0.69	-1.9
2,092,732	-		GFF2054	0.69	-1.6
2,092,770	-		GFF2054	0.72	-1.9
2,092,786	+		GFF2054	0.73	-1.1
2,092,786	+		GFF2054	0.73	-1.3
2,092,786	+		GFF2054	0.73	-1.0
2,092,787	+		GFF2054	0.73	-1.0
2,092,787	+		GFF2054	0.73	-1.0
2,092,787	+		GFF2054	0.73	-1.5
2,092,789	-		GFF2054	0.73	-1.9
2,092,795	-		GFF2054	0.73	-1.9
2,092,817	+		GFF2054	0.74	-1.7
2,092,825	-		GFF2054	0.75	-0.5
2,092,825	-		GFF2054	0.75	-1.0
2,092,827	+		GFF2054	0.75	-1.2
2,092,827	-		GFF2054	0.75	-1.0
2,092,828	+		GFF2054	0.75	-1.2
2,092,836	+		GFF2054	0.75	-1.0
2,092,906	+		GFF2054	0.79	-2.7
2,092,906	+		GFF2054	0.79	-1.8
2,092,926	+		GFF2054	0.81	-1.3
2,092,931	+		GFF2054	0.81	-1.3
2,092,939	-		GFF2054	0.81	-0.9
2,092,939	-		GFF2054	0.81	-1.9
2,092,952	+		GFF2054	0.82	-1.4
2,092,953	-		GFF2054	0.82	-0.3
2,092,968	+		GFF2054	0.83	-2.6
2,092,973	+		GFF2054	0.83	-0.7
2,092,973	-		GFF2054	0.83	-0.4
2,092,976	-		GFF2054	0.83	-2.1
2,092,976	-		GFF2054	0.83	-0.3
2,092,981	-		GFF2054	0.84	-2.0
2,092,981	-		GFF2054	0.84	-3.2
2,093,005	+		GFF2054	0.85	-1.8
2,093,022	-		GFF2054	0.86	-0.9
2,093,028	+		GFF2054	0.86	-1.0
2,093,028	+		GFF2054	0.86	-2.0
2,093,035	+		GFF2054	0.87	-1.5
2,093,036	-		GFF2054	0.87	-1.2
2,093,045	+		GFF2054	0.87	-0.3
2,093,053	-		GFF2054	0.88	-1.4
2,093,053	-		GFF2054	0.88	-1.8
2,093,053	-		GFF2054	0.88	-0.6
2,093,055	+		GFF2054	0.88	-1.0
2,093,118	-				-1.3
2,093,158	+				-1.3
2,093,158	+				-1.1
2,093,164	-				-1.0
2,093,166	-				-2.3
2,093,214	+				-0.8
2,093,214	+				-0.3
2,093,214	+				+1.4
2,093,214	+				-0.8
2,093,214	+				-1.4
2,093,214	+				+1.3
2,093,222	-				-1.7
2,093,222	-				-0.3
2,093,232	-				+0.2
2,093,232	-				-0.4
2,093,232	-				-1.2
2,093,237	+				-0.4
2,093,247	+				-0.0
2,093,247	+				-1.3
2,093,248	+				-0.1
2,093,255	-				-1.8
2,093,260	+				-1.1
2,093,260	+				+0.6
2,093,260	+				-0.3
2,093,260	+				-0.5
2,093,263	-				-0.9
2,093,263	-				-1.1
2,093,268	-				-1.0
2,093,268	-				+0.3
2,093,268	-				-1.2
2,093,268	-				+0.0
2,093,268	-				-0.6
2,093,268	-				-0.5
2,093,268	-				+1.3
2,093,268	-				-0.4
2,093,268	-				-2.4
2,093,268	-				-1.0
2,093,273	+				-1.4
2,093,273	-				+0.6
2,093,278	-				-0.8
2,093,319	+		GFF2055	0.16	-1.0
2,093,327	-		GFF2055	0.18	-0.7
2,093,327	-		GFF2055	0.18	+0.4
2,093,327	-		GFF2055	0.18	-1.8
2,093,330	+		GFF2055	0.19	-0.9
2,093,330	+		GFF2055	0.19	-1.3
2,093,330	+		GFF2055	0.19	+1.3
2,093,330	+		GFF2055	0.19	-1.3
2,093,338	-		GFF2055	0.22	+0.6
2,093,338	-		GFF2055	0.22	+0.4
2,093,344	+		GFF2055	0.23	-0.8
2,093,365	+		GFF2055	0.29	+0.2
2,093,372	+		GFF2055	0.31	+0.4
2,093,373	-		GFF2055	0.32	-1.1
2,093,392	+		GFF2055	0.37	+0.6
2,093,392	+		GFF2055	0.37	+0.3
2,093,397	+		GFF2055	0.39	+0.6
2,093,400	-		GFF2055	0.39	-2.1
2,093,400	-		GFF2055	0.39	-1.4
2,093,414	+		GFF2055	0.43	-1.0
2,093,414	+		GFF2055	0.43	-0.3
2,093,427	+		GFF2055	0.47	+0.7
2,093,437	+		GFF2055	0.50	-2.7
2,093,465	+		GFF2055	0.58	-1.3
2,093,477	-		GFF2055	0.61	-2.1
2,093,478	-		GFF2055	0.62	-1.0
2,093,491	+		GFF2055	0.66	-1.3
2,093,499	-		GFF2055	0.68	-0.7
2,093,526	+		GFF2055	0.76	+0.3
2,093,541	-		GFF2055	0.80	-0.7
2,093,541	-		GFF2055	0.80	-0.6
2,093,545	+		GFF2055	0.81	+0.0
2,093,546	-		GFF2055	0.81	+0.3
2,093,546	-		GFF2055	0.81	-1.3
2,093,625	+				-2.8
2,093,625	+				-0.8
2,093,633	-				-1.5
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2,093,666	-		GFF2056	0.11	-1.3
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2,093,728	+		GFF2056	0.23	-1.7
2,093,736	-		GFF2056	0.24	-0.5
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2,093,911	-		GFF2056	0.58	-2.7
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2,093,911	-		GFF2056	0.58	-2.0
2,093,911	-		GFF2056	0.58	-1.1
2,093,927	+		GFF2056	0.61	-2.6
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2,093,941	-		GFF2056	0.64	-1.7
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2,094,021	+		GFF2056	0.80	-1.4
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2,094,068	+		GFF2056	0.89	-1.7
2,094,068	+		GFF2056	0.89	-1.1
2,094,076	-				+0.6
2,094,076	-				-1.6
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2,094,091	-				-0.7
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2,094,096	+				-0.7
2,094,096	+				-2.0
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2,094,168	+				-0.9
2,094,173	+				+0.0
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2,094,181	-				-1.0
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2,094,185	+				-0.5
2,094,187	+				-0.8
2,094,195	-				-1.2
2,094,200	+				+0.4
2,094,205	+				-0.8
2,094,242	+				-0.9
2,094,253	+				-0.6
2,094,253	+				-0.5
2,094,253	+				-1.7
2,094,253	+				-2.8
2,094,253	+				-1.8
2,094,253	+				-1.6
2,094,256	-				-1.7
2,094,259	+				-2.3
2,094,259	+				-0.9
2,094,260	+				-2.1
2,094,261	-				-1.1
2,094,261	-				-1.5
2,094,261	-				-0.3
2,094,261	-				-0.5