Strain Fitness in Sphingobium sp. HT1-2 around GFF2053

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,089,504	+				-0.7
2,089,512	-				-1.6
2,089,524	+				-1.3
2,089,524	+				-1.3
2,089,524	+				-1.3
2,089,532	-				-0.3
2,089,532	-				-1.3
2,089,532	-				-1.2
2,089,535	+				+0.7
2,089,571	+				-1.1
2,089,579	+				-1.7
2,089,581	+				-1.0
2,089,587	-				+0.5
2,089,587	-				-0.4
2,089,614	+				-0.8
2,089,622	-				-0.7
2,089,622	-				-0.9
2,089,626	+				-0.6
2,089,634	-				-2.2
2,089,634	-				-0.4
2,089,639	-				-0.4
2,089,639	-				-0.4
2,089,682	+		GFF2052	0.11	-0.7
2,089,683	+		GFF2052	0.11	-1.3
2,089,690	-		GFF2052	0.11	-1.6
2,089,691	-		GFF2052	0.12	-1.4
2,089,704	+		GFF2052	0.13	-1.8
2,089,714	+		GFF2052	0.14	-0.9
2,089,722	-		GFF2052	0.15	-0.9
2,089,810	-		GFF2052	0.25	-0.9
2,089,817	+		GFF2052	0.26	-1.9
2,089,820	-		GFF2052	0.26	-0.4
2,089,835	-		GFF2052	0.28	-0.4
2,089,835	-		GFF2052	0.28	-0.6
2,089,835	-		GFF2052	0.28	-1.3
2,089,851	+		GFF2052	0.30	-0.7
2,089,859	-		GFF2052	0.31	-1.9
2,089,947	-		GFF2052	0.41	-1.5
2,089,972	-		GFF2052	0.44	-0.4
2,090,034	+		GFF2052	0.51	-0.9
2,090,042	-		GFF2052	0.52	-1.8
2,090,042	-		GFF2052	0.52	-0.3
2,090,067	+		GFF2052	0.54	-1.4
2,090,067	+		GFF2052	0.54	-1.3
2,090,067	+		GFF2052	0.54	-0.3
2,090,075	-		GFF2052	0.55	-0.7
2,090,075	-		GFF2052	0.55	-0.6
2,090,075	-		GFF2052	0.55	-0.9
2,090,075	-		GFF2052	0.55	-0.6
2,090,075	-		GFF2052	0.55	-1.8
2,090,075	-		GFF2052	0.55	-1.1
2,090,087	+		GFF2052	0.57	+1.3
2,090,087	+		GFF2052	0.57	-1.3
2,090,087	+		GFF2052	0.57	-1.0
2,090,189	+		GFF2052	0.68	-0.3
2,090,202	-		GFF2052	0.70	-0.9
2,090,294	-		GFF2052	0.80	-0.4
2,090,299	-		GFF2052	0.81	-1.4
2,090,306	+		GFF2052	0.82	-1.4
2,090,349	+		GFF2052	0.86	-0.8
2,090,351	-		GFF2052	0.87	-0.8
2,090,353	+		GFF2052	0.87	-0.8
2,090,357	-		GFF2052	0.87	-0.8
2,090,401	-				-1.7
2,090,401	-				-1.0
2,090,428	+				-0.6
2,090,443	-				-1.1
2,090,463	+				-0.2
2,090,471	-				-1.2
2,090,560	+				+1.0
2,090,573	-				-0.4
2,090,596	-		GFF2053	0.12	-0.3
2,090,609	+		GFF2053	0.13	+1.3
2,090,609	+		GFF2053	0.13	-0.3
2,090,609	+		GFF2053	0.13	-0.6
2,090,609	+		GFF2053	0.13	-0.6
2,090,609	+		GFF2053	0.13	-0.3
2,090,609	+		GFF2053	0.13	-0.7
2,090,617	-		GFF2053	0.14	-1.8
2,090,617	-		GFF2053	0.14	-0.1
2,090,654	+		GFF2053	0.18	+0.7
2,090,700	+		GFF2053	0.23	-0.3
2,090,700	+		GFF2053	0.23	-0.7
2,090,700	+		GFF2053	0.23	+1.4
2,090,700	+		GFF2053	0.23	+0.2
2,090,700	+		GFF2053	0.23	+0.3
2,090,708	-		GFF2053	0.24	-0.7
2,090,730	+		GFF2053	0.27	-1.3
2,090,730	+		GFF2053	0.27	-0.9
2,090,733	-		GFF2053	0.27	+1.1
2,090,738	-		GFF2053	0.27	-1.0
2,090,738	-		GFF2053	0.27	-0.4
2,090,808	+		GFF2053	0.35	-1.0
2,090,846	-		GFF2053	0.39	-0.9
2,090,904	+		GFF2053	0.45	-1.3
2,090,912	-		GFF2053	0.46	+0.2
2,090,974	+		GFF2053	0.53	-1.3
2,091,104	-		GFF2053	0.67	-0.3
2,091,152	+		GFF2053	0.72	-0.4
2,091,169	+		GFF2053	0.74	-0.3
2,091,178	-		GFF2053	0.75	-0.8
2,091,333	+				-0.8
2,091,347	-				-0.1
2,091,347	-				-1.0
2,091,433	+				+0.8
2,091,434	+				+0.0
2,091,442	-				-0.3
2,091,442	-				-1.6
2,091,455	-				-1.0
2,091,471	+				+0.7
2,091,471	+				+1.0
2,091,471	+				-1.0
2,091,471	+				-0.7
2,091,471	+				-3.1
2,091,471	+				+0.6
2,091,479	-				-1.4
2,091,479	-				-1.2
2,091,479	-				-2.3
2,091,538	+				-0.6
2,091,546	-				-0.1
2,091,546	-				-1.7
2,091,550	+				-1.0
2,091,550	+				-0.4
2,091,559	+				-1.0
2,091,586	-				-0.4
2,091,592	+				-2.2
2,091,596	-				+0.9
2,091,605	-				-0.4
2,091,633	-				-1.7
2,091,633	-				-1.7
2,091,640	+				-0.6
2,091,658	-				-2.0
2,091,670	+				-1.4
2,091,686	+				-1.8
2,091,691	+		GFF2054	0.10	-0.9
2,091,692	+		GFF2054	0.10	-1.3
2,091,692	+		GFF2054	0.10	-1.1
2,091,696	+		GFF2054	0.10	-1.1
2,091,699	-		GFF2054	0.11	-2.0
2,091,699	-		GFF2054	0.11	-1.3
2,091,704	-		GFF2054	0.11	-2.0
2,091,715	+		GFF2054	0.11	-1.8
2,091,715	+		GFF2054	0.11	-2.5
2,091,725	+		GFF2054	0.12	-1.8
2,091,725	+		GFF2054	0.12	-0.9
2,091,730	+		GFF2054	0.12	-1.3
2,091,733	-		GFF2054	0.12	-0.8
2,091,733	-		GFF2054	0.12	-0.6
2,091,735	+		GFF2054	0.13	-1.8
2,091,735	+		GFF2054	0.13	-2.1
2,091,735	+		GFF2054	0.13	-1.5
2,091,735	+		GFF2054	0.13	-1.7
2,091,735	+		GFF2054	0.13	-0.9
2,091,735	+		GFF2054	0.13	-0.3
2,091,738	-		GFF2054	0.13	-1.9
2,091,741	+		GFF2054	0.13	-1.0
2,091,743	-		GFF2054	0.13	-2.4
2,091,751	+		GFF2054	0.13	-1.7
2,091,760	-		GFF2054	0.14	-1.0
2,091,774	+		GFF2054	0.15	-0.5
2,091,787	+		GFF2054	0.16	-1.2
2,091,808	+		GFF2054	0.17	-0.6
2,091,815	+		GFF2054	0.17	-4.5
2,091,823	-		GFF2054	0.18	-0.6
2,091,823	-		GFF2054	0.18	-1.0
2,091,823	-		GFF2054	0.18	-1.0
2,091,828	-		GFF2054	0.18	-1.5
2,091,835	+		GFF2054	0.18	-1.6
2,091,835	+		GFF2054	0.18	-1.3
2,091,869	+		GFF2054	0.20	-1.3
2,091,883	+		GFF2054	0.21	-0.5
2,091,883	+		GFF2054	0.21	-3.0
2,091,883	+		GFF2054	0.21	-2.8
2,091,883	+		GFF2054	0.21	-1.5
2,091,883	+		GFF2054	0.21	-1.6
2,091,888	+		GFF2054	0.21	-1.2
2,091,891	-		GFF2054	0.21	-1.9
2,091,891	-		GFF2054	0.21	-2.5
2,091,891	-		GFF2054	0.21	-1.0
2,091,891	-		GFF2054	0.21	-2.4
2,091,891	-		GFF2054	0.21	-0.9
2,091,891	-		GFF2054	0.21	-2.6
2,091,891	-		GFF2054	0.21	-0.7
2,091,891	-		GFF2054	0.21	-1.7
2,091,891	-		GFF2054	0.21	-1.3
2,091,895	+		GFF2054	0.22	-1.2
2,091,896	-		GFF2054	0.22	-0.7
2,091,896	-		GFF2054	0.22	-2.2
2,091,910	+		GFF2054	0.23	-2.0
2,091,928	+		GFF2054	0.24	-2.3
2,091,928	+		GFF2054	0.24	-1.6
2,091,928	+		GFF2054	0.24	-2.5
2,091,936	-		GFF2054	0.24	-1.9
2,091,936	-		GFF2054	0.24	-1.5
2,091,936	-		GFF2054	0.24	-0.3
2,091,955	-		GFF2054	0.25	-1.8
2,091,963	+		GFF2054	0.26	-1.3
2,091,980	-		GFF2054	0.27	-0.8
2,092,019	+		GFF2054	0.29	-1.8
2,092,025	+		GFF2054	0.29	-2.3
2,092,025	+		GFF2054	0.29	-1.1
2,092,025	+		GFF2054	0.29	-1.6
2,092,025	+		GFF2054	0.29	-3.1
2,092,033	-		GFF2054	0.30	-1.4
2,092,036	+		GFF2054	0.30	-1.8
2,092,043	+		GFF2054	0.30	-2.0
2,092,051	-		GFF2054	0.31	-0.6
2,092,057	-		GFF2054	0.31	-1.3
2,092,059	+		GFF2054	0.31	-0.6
2,092,067	-		GFF2054	0.32	-1.9
2,092,082	-		GFF2054	0.32	-1.2
2,092,138	-		GFF2054	0.36	-0.7
2,092,146	-		GFF2054	0.36	-1.3
2,092,146	-		GFF2054	0.36	-1.7
2,092,146	-		GFF2054	0.36	-1.3
2,092,155	-		GFF2054	0.37	-0.8
2,092,167	-		GFF2054	0.37	-1.7
2,092,172	+		GFF2054	0.38	-0.5
2,092,172	+		GFF2054	0.38	-1.9
2,092,172	+		GFF2054	0.38	-0.8
2,092,177	+		GFF2054	0.38	-1.5
2,092,177	+		GFF2054	0.38	-1.4
2,092,177	+		GFF2054	0.38	-1.6
2,092,177	-		GFF2054	0.38	-2.1
2,092,180	-		GFF2054	0.38	-1.2
2,092,182	+		GFF2054	0.38	-0.5
2,092,185	-		GFF2054	0.38	-1.0
2,092,185	-		GFF2054	0.38	-1.5
2,092,189	+		GFF2054	0.38	-0.5
2,092,213	-		GFF2054	0.40	-1.7
2,092,227	+		GFF2054	0.41	-1.5
2,092,227	+		GFF2054	0.41	-0.8
2,092,227	+		GFF2054	0.41	-0.3
2,092,227	+		GFF2054	0.41	-1.1
2,092,228	-		GFF2054	0.41	-2.8
2,092,232	+		GFF2054	0.41	-2.2
2,092,232	+		GFF2054	0.41	-1.6
2,092,232	+		GFF2054	0.41	-1.8
2,092,232	+		GFF2054	0.41	-0.3
2,092,235	-		GFF2054	0.41	-1.8
2,092,235	-		GFF2054	0.41	-1.9
2,092,241	+		GFF2054	0.41	-3.2
2,092,249	-		GFF2054	0.42	-2.8
2,092,249	-		GFF2054	0.42	-1.9
2,092,249	-		GFF2054	0.42	-1.4
2,092,250	-		GFF2054	0.42	-2.4
2,092,263	+		GFF2054	0.43	-1.7
2,092,263	+		GFF2054	0.43	-1.8
2,092,263	+		GFF2054	0.43	-2.5
2,092,271	-		GFF2054	0.43	-1.7
2,092,324	+		GFF2054	0.46	-2.4
2,092,334	+		GFF2054	0.47	-3.2
2,092,334	+		GFF2054	0.47	-1.9
2,092,334	+		GFF2054	0.47	-2.0
2,092,335	+		GFF2054	0.47	-1.0
2,092,335	+		GFF2054	0.47	-2.0
2,092,342	+		GFF2054	0.47	+0.3
2,092,342	-		GFF2054	0.47	-2.6
2,092,392	-		GFF2054	0.50	-1.0
2,092,392	-		GFF2054	0.50	-1.7
2,092,392	-		GFF2054	0.50	-1.0
2,092,393	-		GFF2054	0.50	+0.9
2,092,400	-		GFF2054	0.51	-2.3