Strain Fitness in Sphingobium sp. HT1-2 around GFF2009

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,031,481	-		GFF2008	0.26	-1.4
2,031,481	-		GFF2008	0.26	-1.2
2,031,481	-		GFF2008	0.26	-0.9
2,031,508	+		GFF2008	0.29	-1.5
2,031,508	+		GFF2008	0.29	-1.1
2,031,516	-		GFF2008	0.29	-0.5
2,031,516	-		GFF2008	0.29	+0.6
2,031,516	-		GFF2008	0.29	+1.1
2,031,525	-		GFF2008	0.30	-0.6
2,031,525	-		GFF2008	0.30	-0.8
2,031,533	-		GFF2008	0.31	-0.6
2,031,567	+		GFF2008	0.34	-0.1
2,031,568	-		GFF2008	0.34	-1.9
2,031,577	+		GFF2008	0.35	-1.4
2,031,582	+		GFF2008	0.35	-0.1
2,031,597	-		GFF2008	0.36	-0.4
2,031,625	+		GFF2008	0.39	+0.4
2,031,625	+		GFF2008	0.39	+0.8
2,031,633	-		GFF2008	0.39	+0.5
2,031,633	-		GFF2008	0.39	+1.1
2,031,633	-		GFF2008	0.39	+0.9
2,031,645	+		GFF2008	0.40	+0.3
2,031,645	+		GFF2008	0.40	-1.4
2,031,649	-		GFF2008	0.41	-1.5
2,031,656	+		GFF2008	0.41	-0.5
2,031,656	+		GFF2008	0.41	-0.5
2,031,664	-		GFF2008	0.42	-0.5
2,031,671	+		GFF2008	0.43	-1.6
2,031,672	-		GFF2008	0.43	+1.1
2,031,678	-		GFF2008	0.43	-0.3
2,031,685	-		GFF2008	0.44	-0.4
2,031,719	-		GFF2008	0.47	-1.5
2,031,753	-		GFF2008	0.50	+0.7
2,031,753	-		GFF2008	0.50	-1.0
2,031,776	-		GFF2008	0.52	-0.6
2,031,806	+		GFF2008	0.54	+0.4
2,031,813	+		GFF2008	0.55	+0.1
2,031,819	+		GFF2008	0.55	-2.3
2,031,822	+		GFF2008	0.56	-2.4
2,031,827	-		GFF2008	0.56	-0.7
2,031,827	-		GFF2008	0.56	-0.7
2,031,827	-		GFF2008	0.56	-0.6
2,031,827	-		GFF2008	0.56	-0.4
2,031,828	-		GFF2008	0.56	-1.6
2,031,857	+		GFF2008	0.59	-1.1
2,031,858	-		GFF2008	0.59	-0.0
2,031,880	+		GFF2008	0.61	+0.5
2,031,887	+		GFF2008	0.61	-1.1
2,031,898	+		GFF2008	0.62	-0.6
2,031,898	+		GFF2008	0.62	-2.4
2,031,906	-		GFF2008	0.63	-0.8
2,031,908	+		GFF2008	0.63	-0.7
2,031,914	-		GFF2008	0.64	-0.5
2,031,918	+		GFF2008	0.64	-0.1
2,031,933	+		GFF2008	0.65	-1.9
2,031,933	+		GFF2008	0.65	+0.8
2,031,977	+		GFF2008	0.69	+0.1
2,031,985	-		GFF2008	0.70	-1.6
2,031,987	+		GFF2008	0.70	+0.2
2,031,987	+		GFF2008	0.70	+0.7
2,031,987	+		GFF2008	0.70	-0.5
2,031,987	+		GFF2008	0.70	-2.3
2,031,995	-		GFF2008	0.71	-0.6
2,031,995	-		GFF2008	0.71	-0.1
2,031,995	-		GFF2008	0.71	+0.8
2,031,995	-		GFF2008	0.71	+0.1
2,031,995	-		GFF2008	0.71	-0.3
2,031,995	-		GFF2008	0.71	-0.9
2,031,995	-		GFF2008	0.71	+0.8
2,031,997	+		GFF2008	0.71	-0.3
2,032,000	-		GFF2008	0.71	+0.8
2,032,000	-		GFF2008	0.71	+0.1
2,032,000	-		GFF2008	0.71	-0.6
2,032,005	-		GFF2008	0.72	-0.8
2,032,005	-		GFF2008	0.72	+0.9
2,032,015	-		GFF2008	0.72	-0.6
2,032,025	+		GFF2008	0.73	-0.3
2,032,025	+		GFF2008	0.73	-1.2
2,032,025	-		GFF2008	0.73	+0.6
2,032,025	-		GFF2008	0.73	+0.2
2,032,030	+		GFF2008	0.74	+0.6
2,032,038	-		GFF2008	0.74	-1.1
2,032,038	-		GFF2008	0.74	-0.4
2,032,058	+		GFF2008	0.76	-1.8
2,032,058	+		GFF2008	0.76	-0.5
2,032,066	-		GFF2008	0.77	-0.7
2,032,066	-		GFF2008	0.77	-1.2
2,032,066	-		GFF2008	0.77	-1.0
2,032,115	+		GFF2008	0.81	-0.9
2,032,137	+		GFF2008	0.83	+0.1
2,032,147	-		GFF2008	0.84	+1.3
2,032,155	-		GFF2008	0.84	-1.4
2,032,160	+		GFF2008	0.85	-1.5
2,032,160	+		GFF2008	0.85	+0.4
2,032,160	-		GFF2008	0.85	-2.7
2,032,168	-		GFF2008	0.86	-0.4
2,032,175	+		GFF2008	0.86	-0.4
2,032,175	+		GFF2008	0.86	+0.3
2,032,178	-		GFF2008	0.86	-1.2
2,032,183	-		GFF2008	0.87	-0.6
2,032,183	-		GFF2008	0.87	-0.2
2,032,184	+		GFF2008	0.87	-0.0
2,032,188	+		GFF2008	0.87	-0.8
2,032,194	+		GFF2008	0.88	+0.9
2,032,229	-				-1.1
2,032,230	+				-1.0
2,032,249	+				-0.9
2,032,257	+				-1.3
2,032,265	+				-2.8
2,032,308	+				+0.6
2,032,320	+				+0.1
2,032,328	+				+1.2
2,032,328	+				-0.3
2,032,328	+				-0.5
2,032,328	+				-1.1
2,032,328	-				-0.4
2,032,333	+				-1.6
2,032,336	-				+0.3
2,032,336	-				-0.8
2,032,336	-				-1.1
2,032,338	+				-0.6
2,032,341	-				-2.0
2,032,341	-				+0.9
2,032,341	-				+0.5
2,032,341	-				-2.1
2,032,341	-				+1.3
2,032,346	-				-1.2
2,032,346	-				-0.9
2,032,358	+				-0.6
2,032,366	-				-1.5
2,032,373	+				-0.9
2,032,482	+				-2.0
2,032,482	+				-1.4
2,032,482	+				-1.2
2,032,483	+				-0.0
2,032,490	-				-1.8
2,032,490	-				-0.3
2,032,491	-				+0.4
2,032,493	+				-1.1
2,032,493	+				+0.3
2,032,493	+				+0.2
2,032,496	-				-1.2
2,032,501	-				-1.2
2,032,501	-				+0.3
2,032,501	-				-0.9
2,032,501	-				+0.1
2,032,501	-				-0.7
2,032,512	+				-0.6
2,032,525	-				+0.1
2,032,529	-				-0.0
2,032,561	-				-0.5
2,032,565	+				+0.8
2,032,565	+				-0.5
2,032,568	-				-0.8
2,032,573	-				+0.4
2,032,596	-		GFF2009	0.10	-0.2
2,032,609	+		GFF2009	0.11	-0.1
2,032,619	+		GFF2009	0.12	+0.2
2,032,658	-		GFF2009	0.15	-0.0
2,032,658	-		GFF2009	0.15	-0.3
2,032,665	+		GFF2009	0.16	+0.8
2,032,665	+		GFF2009	0.16	-0.0
2,032,678	-		GFF2009	0.17	-1.0
2,032,683	-		GFF2009	0.17	+0.2
2,032,723	-		GFF2009	0.21	-0.3
2,032,723	-		GFF2009	0.21	-0.9
2,032,766	+		GFF2009	0.25	-0.2
2,032,774	-		GFF2009	0.25	-0.4
2,032,774	-		GFF2009	0.25	+0.3
2,032,774	-		GFF2009	0.25	-1.1
2,032,774	-		GFF2009	0.25	-0.8
2,032,777	+		GFF2009	0.26	-1.4
2,032,784	+		GFF2009	0.26	-0.0
2,032,784	+		GFF2009	0.26	+0.4
2,032,784	+		GFF2009	0.26	-1.7
2,032,785	+		GFF2009	0.26	-1.4
2,032,792	-		GFF2009	0.27	+0.2
2,032,792	-		GFF2009	0.27	-0.9
2,032,803	+		GFF2009	0.28	-0.6
2,032,805	-		GFF2009	0.28	-0.5
2,032,811	-		GFF2009	0.28	-0.7
2,032,819	+		GFF2009	0.29	-1.0
2,032,827	-		GFF2009	0.30	+0.7
2,032,841	+		GFF2009	0.31	-1.2
2,032,841	+		GFF2009	0.31	-0.2
2,032,849	-		GFF2009	0.32	+0.1
2,032,850	-		GFF2009	0.32	-1.8
2,032,857	+		GFF2009	0.32	-0.8
2,032,869	-		GFF2009	0.33	+0.3
2,032,877	+		GFF2009	0.34	-0.0
2,032,883	+		GFF2009	0.35	-2.2
2,032,886	-		GFF2009	0.35	+1.5
2,032,886	-		GFF2009	0.35	-1.2
2,032,886	-		GFF2009	0.35	-1.2
2,032,901	-		GFF2009	0.36	+0.1
2,032,919	-		GFF2009	0.38	-0.7
2,032,929	-		GFF2009	0.39	-0.4
2,032,931	+		GFF2009	0.39	-1.1
2,032,954	-		GFF2009	0.41	-0.6
2,032,956	+		GFF2009	0.41	-1.9
2,032,956	+		GFF2009	0.41	-0.2
2,032,963	-		GFF2009	0.41	+2.4
2,032,982	+		GFF2009	0.43	-1.4
2,032,982	+		GFF2009	0.43	+1.4
2,032,982	+		GFF2009	0.43	-0.3
2,032,982	+		GFF2009	0.43	-1.5
2,032,982	+		GFF2009	0.43	-1.1
2,032,982	+		GFF2009	0.43	-0.6
2,032,982	+		GFF2009	0.43	+1.0
2,032,982	+		GFF2009	0.43	-1.0
2,032,982	+		GFF2009	0.43	+0.3
2,032,982	+		GFF2009	0.43	-0.2
2,032,982	+		GFF2009	0.43	+0.6
2,032,982	+		GFF2009	0.43	+0.6
2,032,990	-		GFF2009	0.44	+0.5
2,032,990	-		GFF2009	0.44	+0.8
2,032,990	-		GFF2009	0.44	-0.3
2,032,990	-		GFF2009	0.44	-0.4
2,032,990	-		GFF2009	0.44	-0.1
2,032,999	+		GFF2009	0.45	-1.2
2,033,006	+		GFF2009	0.45	-0.7
2,033,014	-		GFF2009	0.46	-1.3
2,033,014	-		GFF2009	0.46	-0.0
2,033,024	-		GFF2009	0.47	-0.9
2,033,029	-		GFF2009	0.47	-1.5
2,033,030	-		GFF2009	0.47	-0.2
2,033,030	-		GFF2009	0.47	-0.3
2,033,039	+		GFF2009	0.48	-0.3
2,033,039	+		GFF2009	0.48	-1.2
2,033,045	-		GFF2009	0.49	-0.6
2,033,075	+		GFF2009	0.51	-1.7
2,033,075	+		GFF2009	0.51	-1.4
2,033,092	+		GFF2009	0.53	-0.5
2,033,092	+		GFF2009	0.53	+0.1
2,033,100	-		GFF2009	0.53	-0.6
2,033,100	-		GFF2009	0.53	+0.8
2,033,120	+		GFF2009	0.55	-1.2
2,033,130	+		GFF2009	0.56	-0.5
2,033,130	+		GFF2009	0.56	-0.1
2,033,131	+		GFF2009	0.56	+1.3
2,033,138	-		GFF2009	0.56	-0.6
2,033,138	-		GFF2009	0.56	-0.2
2,033,138	-		GFF2009	0.56	+0.4
2,033,156	-		GFF2009	0.58	-1.3
2,033,156	-		GFF2009	0.58	-1.8
2,033,156	-		GFF2009	0.58	+0.0
2,033,158	+		GFF2009	0.58	-0.8
2,033,201	-		GFF2009	0.62	-1.5
2,033,207	-		GFF2009	0.62	-0.3
2,033,207	-		GFF2009	0.62	-1.6
2,033,217	-		GFF2009	0.63	+0.4
2,033,217	-		GFF2009	0.63	-0.8
2,033,217	-		GFF2009	0.63	-0.5
2,033,237	-		GFF2009	0.65	-0.8
2,033,237	-		GFF2009	0.65	-0.5
2,033,239	+		GFF2009	0.65	-0.7
2,033,244	+		GFF2009	0.66	+0.4
2,033,244	+		GFF2009	0.66	+0.2
2,033,244	+		GFF2009	0.66	-0.8
2,033,244	+		GFF2009	0.66	-0.8
2,033,249	+		GFF2009	0.66	-1.3
2,033,249	+		GFF2009	0.66	-2.1
2,033,250	+		GFF2009	0.66	-0.9
2,033,252	-		GFF2009	0.66	-1.8
2,033,252	-		GFF2009	0.66	+0.3
2,033,252	-		GFF2009	0.66	-2.2
2,033,276	-		GFF2009	0.68	-1.0
2,033,276	-		GFF2009	0.68	-1.1
2,033,276	-		GFF2009	0.68	+0.7
2,033,278	+		GFF2009	0.68	-0.5
2,033,286	-		GFF2009	0.69	+0.2
2,033,296	-		GFF2009	0.70	-1.9
2,033,318	-		GFF2009	0.72	-0.1
2,033,320	+		GFF2009	0.72	-1.3
2,033,320	+		GFF2009	0.72	-0.9
2,033,322	+		GFF2009	0.72	-0.2
2,033,322	+		GFF2009	0.72	-0.2
2,033,322	+		GFF2009	0.72	-0.8
2,033,322	+		GFF2009	0.72	-0.9
2,033,328	+		GFF2009	0.73	-0.6
2,033,330	-		GFF2009	0.73	-1.3
2,033,330	-		GFF2009	0.73	+1.3
2,033,330	-		GFF2009	0.73	-0.7
2,033,330	-		GFF2009	0.73	-0.2
2,033,350	-		GFF2009	0.75	-0.4
2,033,356	-		GFF2009	0.75	-0.3
2,033,363	+		GFF2009	0.76	+0.0
2,033,363	+		GFF2009	0.76	-0.9
2,033,363	+		GFF2009	0.76	-0.1
2,033,363	+		GFF2009	0.76	-1.9
2,033,363	+		GFF2009	0.76	+1.1
2,033,363	+		GFF2009	0.76	-1.1
2,033,366	-		GFF2009	0.76	-0.5
2,033,371	-		GFF2009	0.76	-1.5
2,033,371	-		GFF2009	0.76	+0.1
2,033,371	-		GFF2009	0.76	-0.6
2,033,371	-		GFF2009	0.76	+2.1
2,033,371	-		GFF2009	0.76	-2.2
2,033,371	-		GFF2009	0.76	-0.3
2,033,371	-		GFF2009	0.76	+0.1
2,033,371	-		GFF2009	0.76	+0.1
2,033,371	-		GFF2009	0.76	-1.3
2,033,384	+		GFF2009	0.78	+0.6
2,033,420	+		GFF2009	0.81	-0.7
2,033,437	+		GFF2009	0.82	+0.5
2,033,437	+		GFF2009	0.82	+0.9
2,033,464	-		GFF2009	0.84	-1.4
2,033,479	+		GFF2009	0.86	+1.2
2,033,487	-		GFF2009	0.86	+0.2
2,033,498	+		GFF2009	0.87	-0.5
2,033,508	+		GFF2009	0.88	-0.9
2,033,511	+		GFF2009	0.88	-0.7
2,033,513	+		GFF2009	0.89	-0.3
2,033,513	+		GFF2009	0.89	-0.7
2,033,541	+				-2.0
2,033,581	+				-1.1
2,033,600	-				-0.8
2,033,600	-				-0.2
2,033,600	-				+1.2
2,033,600	-				-1.2
2,033,600	-				-0.1
2,033,600	-				-0.2
2,033,600	-				-0.0
2,033,600	-				+1.4
2,033,619	+				-0.6
2,033,619	+				-0.5
2,033,619	+				-0.4
2,033,619	+				+0.6
2,033,619	+				+0.7
2,033,627	-				+0.1
2,033,627	-				-0.7
2,033,627	-				-0.6
2,033,627	-				-0.2
2,033,630	+				-0.5
2,033,630	+				-0.2
2,033,631	+				+0.8
2,033,631	-				-0.5
2,033,638	-				+0.2
2,033,638	-				-0.5
2,033,638	-				-1.1
2,033,639	-				-0.3
2,033,639	-				+1.0
2,033,646	-				+0.9
2,033,702	-				-0.3
2,033,709	-				-0.7
2,033,722	-				-0.3
2,033,734	+				-0.2
2,033,745	+				-0.6
2,033,752	+				-1.6
2,033,762	+				-1.8
2,033,783	+				+0.4
2,033,784	+				-0.8
2,033,784	+				-0.1
2,033,784	+				+0.2
2,033,784	+				-0.3
2,033,784	+				+0.5
2,033,784	+				+0.4
2,033,784	+				-2.4
2,033,784	+				+0.4
2,033,784	+				+1.4
2,033,784	+				-0.6
2,033,784	+				-0.2
2,033,784	+				-0.7
2,033,784	+				-0.6
2,033,784	+				-1.2
2,033,784	+				-0.4
2,033,784	+				-1.2
2,033,784	+				+0.3
2,033,784	+				-0.0
2,033,792	-				-2.0
2,033,792	-				-1.2
2,033,792	-				+0.3
2,033,792	-				-1.1
2,033,792	-				-1.5
2,033,792	-				-0.4
2,033,792	-				-0.2
2,033,792	-				+1.8
2,033,792	-				+0.1
2,033,792	-				-0.4
2,033,792	-				-0.2
2,033,792	-				+0.1
2,033,792	-				-1.5
2,033,792	-				-0.0
2,033,792	-				+0.5
2,033,792	-				+1.1
2,033,792	-				+0.4
2,033,792	-				+0.8
2,033,792	-				-1.2
2,033,792	-				+0.3
2,033,792	-				-0.8
2,033,792	-				-1.0
2,033,792	-				-0.2
2,033,794	+				-1.3
2,033,808	-				-0.4
2,033,818	-				-0.1
2,033,834	-				+0.7
2,033,856	-				+0.5
2,033,867	+				+0.8
2,033,872	+				+0.7
2,033,876	+				-0.0
2,033,876	+				+0.8
2,033,884	-				+0.4
2,033,884	-				+0.2
2,033,884	-				-0.6
2,033,884	-				-0.5
2,033,884	-				+0.8
2,033,894	+				-1.0
2,033,894	+				+0.1
2,033,894	+				-0.6
2,033,902	-				+0.1
2,033,902	-				+0.5
2,033,902	-				-2.2
2,033,909	+				-1.1
2,033,913	+				-0.9
2,033,940	+				-1.1
2,033,945	+				-1.1
2,033,948	-				-0.9
2,033,953	-				-0.2
2,033,953	-				-2.0
2,033,958	-				-1.3
2,033,958	-				-2.1
2,033,958	-				-0.4
2,033,958	-				-1.1
2,033,958	-				+0.2
2,033,977	-				-0.3
2,033,999	-				-1.2
2,034,025	+				+0.4
2,034,042	+				-1.8
2,034,062	+				-0.4
2,034,070	-				-0.1
2,034,096	+				-0.1
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2,034,099	+				-0.2
2,034,099	+				-1.5
2,034,106	+				-0.8
2,034,106	-				-0.2
2,034,114	-				-1.0
2,034,114	-				-0.7
2,034,147	+				-1.8
2,034,150	+				-1.0
2,034,155	-				-0.6
2,034,155	-				+0.5
2,034,156	+				-1.3
2,034,158	+				-0.2
2,034,158	+				+1.2
2,034,158	+				-0.8
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2,034,165	-				+2.0
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2,034,288	-				+0.7
2,034,293	-				-0.0
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2,034,319	-				+0.2
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2,034,329	-				-0.8
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2,034,396	-				-0.8
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2,034,489	+				-0.1
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2,034,491	+				+0.1
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2,034,497	-				+1.1
2,034,497	-				-0.6
2,034,497	-				+0.4
2,034,497	-				+0.6
2,034,497	-				-0.9
2,034,497	-				-1.6
2,034,499	-				-1.6
2,034,502	+				+0.5
2,034,502	+				-0.4
2,034,507	+				-0.6
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2,034,507	+				-0.5
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2,034,510	-				+0.4
2,034,510	-				-0.6
2,034,512	+				-2.0
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2,034,517	+				-2.1
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2,034,534	-				-1.6
2,034,536	+				+0.4
2,034,576	-		GFF2010	0.10	+0.1
2,034,584	-		GFF2010	0.12	-2.2
2,034,608	+		GFF2010	0.15	-1.1
2,034,608	+		GFF2010	0.15	-0.7
2,034,616	-		GFF2010	0.16	-1.4
2,034,616	-		GFF2010	0.16	+0.4
2,034,631	+		GFF2010	0.18	-1.4
2,034,631	+		GFF2010	0.18	+0.2
2,034,635	+		GFF2010	0.19	-1.2
2,034,643	-		GFF2010	0.20	+1.7