Strain Fitness in Sphingobium sp. HT1-2 around GFF1923

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,947,102	+		GFF1921	0.67	-1.1
1,947,127	+		GFF1921	0.68	-1.6
1,947,127	+		GFF1921	0.68	-1.7
1,947,127	+		GFF1921	0.68	-2.2
1,947,135	-		GFF1921	0.69	-2.1
1,947,135	-		GFF1921	0.69	-1.8
1,947,135	-		GFF1921	0.69	-1.5
1,947,163	-		GFF1921	0.71	-1.7
1,947,180	+		GFF1921	0.72	-1.8
1,947,180	-		GFF1921	0.72	-1.6
1,947,184	+		GFF1921	0.73	-1.6
1,947,201	-		GFF1921	0.74	-1.5
1,947,233	-		GFF1921	0.76	-1.2
1,947,266	-		GFF1921	0.79	-0.6
1,947,275	-		GFF1921	0.79	+0.3
1,947,305	+		GFF1921	0.81	-1.3
1,947,348	+		GFF1921	0.85	-0.6
1,947,376	+		GFF1921	0.87	-1.7
1,947,384	-		GFF1921	0.87	-1.8
1,947,395	-		GFF1921	0.88	-1.7
1,947,422	+				-1.2
1,947,449	-				-1.1
1,947,471	+				+0.3
1,947,479	-				-0.9
1,947,479	-				-0.2
1,947,490	-				+0.1
1,947,533	+				-0.9
1,947,539	+				-0.1
1,947,541	+				-0.9
1,947,541	+				-2.0
1,947,541	+				+0.4
1,947,549	-				+0.4
1,947,549	-				+0.0
1,947,549	-				-1.3
1,947,549	-				-1.7
1,947,549	-				-2.2
1,947,549	-				-1.5
1,947,572	-				-1.0
1,947,582	+				-0.2
1,947,584	-				-0.5
1,947,590	-				-1.1
1,947,597	+				-1.4
1,947,607	+				-0.2
1,947,607	+				-0.8
1,947,607	+				-0.9
1,947,607	+				+0.2
1,947,615	-				-0.6
1,947,615	-				+0.7
1,947,618	+				-0.7
1,947,623	+				-0.5
1,947,629	-				-1.2
1,947,629	-				+0.6
1,947,649	+				+1.3
1,947,649	+				-1.1
1,947,649	+				-0.6
1,947,649	+				-0.5
1,947,649	+				-1.6
1,947,649	+				-1.1
1,947,649	+				+1.4
1,947,649	+				+0.6
1,947,649	+				+0.9
1,947,649	+				+0.6
1,947,649	+				-0.1
1,947,649	+				-1.2
1,947,649	+				-0.5
1,947,649	+				-1.7
1,947,649	+				+0.7
1,947,650	+				+0.5
1,947,650	+				-1.1
1,947,657	-				+0.6
1,947,657	-				-0.9
1,947,657	-				+0.0
1,947,657	-				+0.9
1,947,657	-				+0.7
1,947,657	-				+1.1
1,947,657	-				+0.8
1,947,657	-				-0.6
1,947,657	-				+0.4
1,947,657	-				+0.6
1,947,657	-				-1.6
1,947,657	-				+0.0
1,947,657	-				+0.0
1,947,657	-				-0.1
1,947,657	-				+0.6
1,947,657	-				-1.3
1,947,657	-				-1.6
1,947,657	-				+0.4
1,947,657	-				+0.1
1,947,657	-				-0.3
1,947,657	-				-0.9
1,947,657	-				-0.7
1,947,658	-				-1.1
1,947,658	-				-0.6
1,947,706	-				+1.3
1,947,735	+		GFF1922	0.13	+0.6
1,947,748	+		GFF1922	0.16	+0.7
1,947,750	+		GFF1922	0.17	-0.6
1,947,797	+		GFF1922	0.29	-0.4
1,947,799	+		GFF1922	0.30	-1.5
1,947,799	+		GFF1922	0.30	-0.8
1,947,805	-		GFF1922	0.31	-0.7
1,947,815	-		GFF1922	0.34	-3.4
1,947,861	+		GFF1922	0.47	-1.6
1,947,869	-		GFF1922	0.49	+0.4
1,947,871	-		GFF1922	0.49	-0.1
1,947,881	+		GFF1922	0.52	-0.7
1,947,881	+		GFF1922	0.52	-0.0
1,947,881	+		GFF1922	0.52	-1.1
1,947,889	-		GFF1922	0.54	-0.7
1,947,889	-		GFF1922	0.54	-0.9
1,947,945	+		GFF1922	0.69	-2.2
1,947,967	-		GFF1922	0.75	-2.7
1,947,968	+		GFF1922	0.75	-1.5
1,947,983	-		GFF1922	0.79	-1.5
1,947,983	-		GFF1922	0.79	-0.8
1,947,986	-		GFF1922	0.80	+1.1
1,948,001	-		GFF1922	0.84	-1.0
1,948,029	+				-0.9
1,948,035	-				-1.8
1,948,059	+				+1.0
1,948,059	+				+0.1
1,948,059	+				+0.5
1,948,059	+				-1.2
1,948,062	-				-2.1
1,948,067	-				+0.5
1,948,067	-				+0.9
1,948,067	-				-0.1
1,948,067	-				+0.5
1,948,117	+				-1.5
1,948,124	-				+0.3
1,948,160	+				-2.1
1,948,185	-				-2.5
1,948,187	-				-0.1
1,948,189	+				+0.6
1,948,189	+				-1.3
1,948,189	+				-0.7
1,948,189	+				-2.2
1,948,194	+				-0.3
1,948,197	-				+0.1
1,948,197	-				-1.8
1,948,197	-				-2.1
1,948,197	-				-0.5
1,948,197	-				-0.9
1,948,211	-		GFF1923	0.11	-0.4
1,948,212	-		GFF1923	0.11	-0.8
1,948,212	-		GFF1923	0.11	-1.4
1,948,246	-		GFF1923	0.14	-0.7
1,948,255	-		GFF1923	0.15	-1.2
1,948,256	-		GFF1923	0.15	-2.2
1,948,274	-		GFF1923	0.16	-0.3
1,948,274	-		GFF1923	0.16	-0.6
1,948,290	-		GFF1923	0.18	-1.5
1,948,334	-		GFF1923	0.21	-1.6
1,948,340	+		GFF1923	0.22	-0.7
1,948,393	+		GFF1923	0.26	+0.0
1,948,401	-		GFF1923	0.27	-2.1
1,948,403	-		GFF1923	0.27	-1.2
1,948,431	+		GFF1923	0.30	-0.4
1,948,431	+		GFF1923	0.30	-1.1
1,948,431	+		GFF1923	0.30	+0.5
1,948,431	+		GFF1923	0.30	-0.0
1,948,431	+		GFF1923	0.30	+0.7
1,948,431	+		GFF1923	0.30	-0.7
1,948,431	+		GFF1923	0.30	-0.5
1,948,431	+		GFF1923	0.30	-1.2
1,948,431	+		GFF1923	0.30	-1.6
1,948,431	+		GFF1923	0.30	-0.9
1,948,431	+		GFF1923	0.30	-0.9
1,948,431	+		GFF1923	0.30	-0.8
1,948,434	-		GFF1923	0.30	-1.5
1,948,436	+		GFF1923	0.30	-0.2
1,948,436	+		GFF1923	0.30	-0.6
1,948,436	+		GFF1923	0.30	-0.6
1,948,436	+		GFF1923	0.30	-0.5
1,948,439	-		GFF1923	0.30	-1.1
1,948,439	-		GFF1923	0.30	-1.4
1,948,439	-		GFF1923	0.30	-0.3
1,948,439	-		GFF1923	0.30	-1.1
1,948,439	-		GFF1923	0.30	-0.6
1,948,439	-		GFF1923	0.30	-0.7
1,948,439	-		GFF1923	0.30	-1.1
1,948,439	-		GFF1923	0.30	-0.6
1,948,444	-		GFF1923	0.31	-1.6
1,948,444	-		GFF1923	0.31	-1.9
1,948,444	-		GFF1923	0.31	-1.1
1,948,469	+		GFF1923	0.33	-1.4
1,948,470	-		GFF1923	0.33	-1.8
1,948,477	-		GFF1923	0.34	-1.2
1,948,477	-		GFF1923	0.34	-0.7
1,948,477	-		GFF1923	0.34	-1.3
1,948,477	-		GFF1923	0.34	-1.2
1,948,482	-		GFF1923	0.34	-0.9
1,948,504	-		GFF1923	0.36	-0.6
1,948,520	+		GFF1923	0.37	-1.2
1,948,520	+		GFF1923	0.37	-2.8
1,948,520	+		GFF1923	0.37	-1.0
1,948,520	+		GFF1923	0.37	-1.1
1,948,520	+		GFF1923	0.37	-1.0
1,948,528	-		GFF1923	0.38	-2.0
1,948,528	-		GFF1923	0.38	-0.1
1,948,528	-		GFF1923	0.38	-1.8
1,948,528	-		GFF1923	0.38	-1.1
1,948,528	-		GFF1923	0.38	-0.3
1,948,534	+		GFF1923	0.38	-1.1
1,948,534	+		GFF1923	0.38	-1.0
1,948,534	+		GFF1923	0.38	-1.5
1,948,534	+		GFF1923	0.38	+0.1
1,948,542	-		GFF1923	0.39	-0.5
1,948,542	-		GFF1923	0.39	+0.2
1,948,544	+		GFF1923	0.39	-2.6
1,948,548	-		GFF1923	0.40	-2.8
1,948,559	+		GFF1923	0.41	-1.1
1,948,620	+		GFF1923	0.46	-0.3
1,948,620	+		GFF1923	0.46	-1.1
1,948,620	+		GFF1923	0.46	-0.6
1,948,625	+		GFF1923	0.46	-0.5
1,948,628	-		GFF1923	0.47	+0.1
1,948,638	+		GFF1923	0.47	+0.2
1,948,670	+		GFF1923	0.50	-0.5
1,948,670	-		GFF1923	0.50	-1.7
1,948,670	-		GFF1923	0.50	-1.6
1,948,679	+		GFF1923	0.51	-0.5
1,948,711	+		GFF1923	0.54	-0.5
1,948,715	-		GFF1923	0.54	-0.3
1,948,733	+		GFF1923	0.56	-0.6
1,948,733	+		GFF1923	0.56	-2.1
1,948,741	-		GFF1923	0.56	+0.7
1,948,741	-		GFF1923	0.56	-2.4
1,948,743	+		GFF1923	0.56	-0.5
1,948,768	+		GFF1923	0.59	-1.8
1,948,768	+		GFF1923	0.59	-0.6
1,948,768	+		GFF1923	0.59	-0.3
1,948,768	+		GFF1923	0.59	-0.6
1,948,771	-		GFF1923	0.59	-1.8
1,948,776	-		GFF1923	0.59	+0.8
1,948,776	-		GFF1923	0.59	-1.6
1,948,776	-		GFF1923	0.59	-1.2
1,948,795	+		GFF1923	0.61	-0.8
1,948,809	-		GFF1923	0.62	-0.5
1,948,842	+		GFF1923	0.65	-0.4
1,948,842	+		GFF1923	0.65	-0.4
1,948,850	-		GFF1923	0.66	-2.6
1,948,852	+		GFF1923	0.66	-0.6
1,948,857	-		GFF1923	0.66	-1.2
1,948,897	+		GFF1923	0.70	-1.7
1,948,905	+		GFF1923	0.70	-0.6
1,948,929	+		GFF1923	0.72	-0.3
1,948,932	-		GFF1923	0.73	-0.6
1,948,945	-		GFF1923	0.74	-0.5
1,948,945	-		GFF1923	0.74	-1.1
1,948,952	+		GFF1923	0.74	-1.1
1,948,960	+		GFF1923	0.75	-1.3
1,948,968	-		GFF1923	0.76	-0.5
1,948,968	-		GFF1923	0.76	-0.3
1,948,969	+		GFF1923	0.76	-0.2
1,948,977	-		GFF1923	0.77	-1.2
1,948,986	+		GFF1923	0.77	+0.3
1,949,030	+		GFF1923	0.81	-0.8
1,949,038	-		GFF1923	0.82	-1.7
1,949,040	+		GFF1923	0.82	-1.9
1,949,062	+		GFF1923	0.84	+0.5
1,949,070	-		GFF1923	0.85	-1.3
1,949,072	+		GFF1923	0.85	-1.6
1,949,079	+		GFF1923	0.85	-1.5
1,949,080	-		GFF1923	0.85	-0.1
1,949,102	-		GFF1923	0.87	-1.1
1,949,113	+		GFF1923	0.88	+0.4
1,949,121	-		GFF1923	0.89	-0.3
1,949,129	+		GFF1923	0.90	-1.1
1,949,129	+		GFF1923	0.90	-2.0
1,949,137	-				-0.5
1,949,155	-				-1.2
1,949,164	+				+0.3
1,949,166	-				-0.3
1,949,183	-				-0.3
1,949,197	+				-0.7
1,949,205	-				-1.8
1,949,213	-				-1.3
1,949,213	-				-0.3
1,949,242	-				-0.5
1,949,253	-				-0.5
1,949,284	+				+0.8
1,949,309	+				-0.3
1,949,309	+				+0.2
1,949,335	-				+1.2
1,949,340	+				-1.0
1,949,341	-				+0.2
1,949,347	+				-1.9
1,949,347	+				-0.3
1,949,355	-				+0.5
1,949,355	-				-0.5
1,949,355	-				-0.3
1,949,355	-				+1.0
1,949,368	-				+1.0
1,949,368	-				-2.2
1,949,374	+				+1.3
1,949,374	+				-0.5
1,949,382	-				-0.1
1,949,382	-				-0.3
1,949,440	+				+0.3
1,949,440	+				-0.8
1,949,440	+				-0.6
1,949,440	+				-1.3
1,949,440	+				-1.1
1,949,440	+				-0.6
1,949,440	+				+0.5
1,949,440	+				+0.0
1,949,440	+				+0.6
1,949,440	+				-2.4
1,949,441	-				-1.0
1,949,448	-				-0.4
1,949,448	-				-0.3
1,949,448	-				-0.7
1,949,448	-				-1.0
1,949,448	-				-1.2
1,949,448	-				+0.3
1,949,448	-				+0.7
1,949,485	+				-2.0
1,949,485	+				-0.3
1,949,485	+				-0.3
1,949,493	-				-0.1
1,949,493	-				-0.6
1,949,493	-				-0.1
1,949,493	-				+0.9
1,949,493	-				+0.9
1,949,509	-				-0.3
1,949,511	+				-0.6
1,949,513	+				+0.4
1,949,519	-				-0.6
1,949,530	+				-0.5
1,949,530	+				+0.4
1,949,535	+				-1.3
1,949,569	-				-1.2
1,949,632	-				-0.1
1,949,659	+		GFF1924	0.12	-0.5
1,949,662	-		GFF1924	0.13	-0.4
1,949,667	-		GFF1924	0.14	-0.6
1,949,716	+		GFF1924	0.32	+0.0
1,949,723	-		GFF1924	0.34	-0.1
1,949,723	-		GFF1924	0.34	-1.5
1,949,729	+		GFF1924	0.36	+0.5
1,949,749	-		GFF1924	0.43	-0.5
1,949,777	+		GFF1924	0.53	+0.7
1,949,777	+		GFF1924	0.53	+0.1
1,949,779	+		GFF1924	0.54	-0.3
1,949,781	-		GFF1924	0.54	+0.7
1,949,785	+		GFF1924	0.56	-1.0
1,949,785	+		GFF1924	0.56	-0.4
1,949,785	-		GFF1924	0.56	-0.6
1,949,798	+		GFF1924	0.60	-0.3
1,949,802	+		GFF1924	0.62	+0.9
1,949,802	+		GFF1924	0.62	+0.4
1,949,802	+		GFF1924	0.62	+0.9
1,949,808	+		GFF1924	0.64	+0.3
1,949,810	-		GFF1924	0.65	-1.0
1,949,810	-		GFF1924	0.65	+0.2
1,949,810	-		GFF1924	0.65	-0.5
1,949,810	-		GFF1924	0.65	-0.9
1,949,810	-		GFF1924	0.65	+0.2
1,949,822	+		GFF1924	0.69	-1.7
1,949,822	+		GFF1924	0.69	+0.6
1,949,822	+		GFF1924	0.69	-1.1
1,949,822	+		GFF1924	0.69	-2.1
1,949,822	+		GFF1924	0.69	+0.5
1,949,822	+		GFF1924	0.69	-0.0
1,949,822	+		GFF1924	0.69	-0.3
1,949,822	+		GFF1924	0.69	+0.1
1,949,822	+		GFF1924	0.69	-1.0
1,949,822	+		GFF1924	0.69	-0.3
1,949,822	+		GFF1924	0.69	-2.3
1,949,822	+		GFF1924	0.69	-0.9
1,949,822	+		GFF1924	0.69	-0.3
1,949,822	+		GFF1924	0.69	-1.7
1,949,822	+		GFF1924	0.69	+0.2
1,949,822	+		GFF1924	0.69	+0.0
1,949,822	+		GFF1924	0.69	-1.5
1,949,822	+		GFF1924	0.69	+0.1
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