Strain Fitness in Sphingobium sp. HT1-2 around GFF1909

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,931,113	-				-0.6
1,931,130	-				+0.3
1,931,137	-				-2.4
1,931,194	-				+0.3
1,931,199	+				+0.3
1,931,199	+				-0.2
1,931,199	+				+0.2
1,931,207	-				-0.4
1,931,207	-				-0.6
1,931,207	-				-0.9
1,931,260	+		GFF1908	0.13	-0.4
1,931,260	+		GFF1908	0.13	+0.9
1,931,260	+		GFF1908	0.13	-0.3
1,931,260	+		GFF1908	0.13	+0.2
1,931,260	+		GFF1908	0.13	+0.2
1,931,260	+		GFF1908	0.13	-0.4
1,931,260	+		GFF1908	0.13	-1.6
1,931,260	+		GFF1908	0.13	-0.5
1,931,268	-		GFF1908	0.14	-0.1
1,931,268	-		GFF1908	0.14	-1.1
1,931,268	-		GFF1908	0.14	-0.0
1,931,268	-		GFF1908	0.14	-1.5
1,931,268	-		GFF1908	0.14	+0.7
1,931,268	-		GFF1908	0.14	+1.0
1,931,268	-		GFF1908	0.14	+0.9
1,931,268	-		GFF1908	0.14	-0.9
1,931,268	-		GFF1908	0.14	+0.3
1,931,273	-		GFF1908	0.14	-0.3
1,931,301	+		GFF1908	0.17	+0.1
1,931,323	+		GFF1908	0.20	-1.4
1,931,331	-		GFF1908	0.20	+0.3
1,931,331	-		GFF1908	0.20	-1.7
1,931,331	-		GFF1908	0.20	+1.2
1,931,344	-		GFF1908	0.22	-0.3
1,931,344	-		GFF1908	0.22	-0.5
1,931,349	+		GFF1908	0.22	-0.4
1,931,356	+		GFF1908	0.23	-0.7
1,931,359	-		GFF1908	0.23	-1.1
1,931,359	-		GFF1908	0.23	-0.3
1,931,372	-		GFF1908	0.25	+0.1
1,931,382	-		GFF1908	0.26	-2.2
1,931,438	+		GFF1908	0.31	-1.5
1,931,438	+		GFF1908	0.31	-1.5
1,931,438	+		GFF1908	0.31	+1.0
1,931,438	+		GFF1908	0.31	+0.6
1,931,446	-		GFF1908	0.32	+0.6
1,931,446	-		GFF1908	0.32	+0.1
1,931,446	-		GFF1908	0.32	+0.0
1,931,446	-		GFF1908	0.32	-0.7
1,931,446	-		GFF1908	0.32	+0.1
1,931,451	-		GFF1908	0.33	-1.7
1,931,461	+		GFF1908	0.34	+0.7
1,931,464	-		GFF1908	0.34	-0.3
1,931,469	-		GFF1908	0.35	+0.1
1,931,469	-		GFF1908	0.35	+0.1
1,931,504	-		GFF1908	0.38	-2.0
1,931,504	-		GFF1908	0.38	-1.3
1,931,559	+		GFF1908	0.44	-0.4
1,931,577	-		GFF1908	0.46	-0.7
1,931,654	+		GFF1908	0.54	-1.0
1,931,654	+		GFF1908	0.54	-0.4
1,931,654	+		GFF1908	0.54	-1.5
1,931,654	+		GFF1908	0.54	-0.6
1,931,654	+		GFF1908	0.54	-1.1
1,931,654	+		GFF1908	0.54	+1.3
1,931,654	+		GFF1908	0.54	-1.0
1,931,654	+		GFF1908	0.54	-0.7
1,931,654	+		GFF1908	0.54	+0.6
1,931,654	+		GFF1908	0.54	+0.5
1,931,654	+		GFF1908	0.54	-0.8
1,931,655	+		GFF1908	0.54	+0.1
1,931,655	+		GFF1908	0.54	-0.5
1,931,655	+		GFF1908	0.54	+0.3
1,931,655	+		GFF1908	0.54	+0.2
1,931,655	+		GFF1908	0.54	-0.5
1,931,656	+		GFF1908	0.54	+0.5
1,931,662	-		GFF1908	0.54	-0.4
1,931,662	-		GFF1908	0.54	-1.1
1,931,662	-		GFF1908	0.54	-0.2
1,931,662	-		GFF1908	0.54	+1.5
1,931,662	-		GFF1908	0.54	-0.9
1,931,662	-		GFF1908	0.54	-0.4
1,931,662	-		GFF1908	0.54	-0.3
1,931,662	-		GFF1908	0.54	-0.8
1,931,662	-		GFF1908	0.54	-2.1
1,931,662	-		GFF1908	0.54	-1.0
1,931,662	-		GFF1908	0.54	-1.9
1,931,662	-		GFF1908	0.54	-0.1
1,931,662	-		GFF1908	0.54	+0.5
1,931,662	-		GFF1908	0.54	-0.5
1,931,662	-		GFF1908	0.54	+1.5
1,931,666	+		GFF1908	0.55	-1.1
1,931,667	-		GFF1908	0.55	-1.1
1,931,692	+		GFF1908	0.57	-0.1
1,931,698	+		GFF1908	0.58	-1.0
1,931,700	-		GFF1908	0.58	-1.0
1,931,700	-		GFF1908	0.58	-0.1
1,931,700	-		GFF1908	0.58	-0.5
1,931,700	-		GFF1908	0.58	-0.7
1,931,703	+		GFF1908	0.59	-0.1
1,931,703	+		GFF1908	0.59	-1.1
1,931,703	+		GFF1908	0.59	-2.0
1,931,705	-		GFF1908	0.59	+0.4
1,931,710	-		GFF1908	0.59	-0.1
1,931,711	-		GFF1908	0.59	-1.3
1,931,711	-		GFF1908	0.59	+0.7
1,931,711	-		GFF1908	0.59	-0.8
1,931,713	+		GFF1908	0.60	-0.3
1,931,722	-		GFF1908	0.61	-1.1
1,931,727	-		GFF1908	0.61	-0.6
1,931,732	-		GFF1908	0.62	-1.8
1,931,746	+		GFF1908	0.63	-0.6
1,931,768	+		GFF1908	0.65	-0.7
1,931,768	+		GFF1908	0.65	+1.5
1,931,769	+		GFF1908	0.65	-0.5
1,931,769	+		GFF1908	0.65	+0.0
1,931,770	+		GFF1908	0.65	-0.4
1,931,777	-		GFF1908	0.66	+0.8
1,931,784	+		GFF1908	0.67	-0.3
1,931,784	+		GFF1908	0.67	-0.9
1,931,800	+		GFF1908	0.69	+0.4
1,931,815	+		GFF1908	0.70	-0.9
1,931,815	+		GFF1908	0.70	+2.4
1,931,815	+		GFF1908	0.70	+1.1
1,931,815	+		GFF1908	0.70	+0.6
1,931,823	-		GFF1908	0.71	-2.1
1,931,824	+		GFF1908	0.71	-0.0
1,931,850	-		GFF1908	0.74	+0.6
1,931,859	+		GFF1908	0.75	+0.5
1,931,859	+		GFF1908	0.75	+0.3
1,931,860	-		GFF1908	0.75	+0.1
1,931,867	-		GFF1908	0.75	-0.7
1,931,867	-		GFF1908	0.75	-0.3
1,931,885	+		GFF1908	0.77	-0.9
1,931,885	+		GFF1908	0.77	-0.3
1,931,885	+		GFF1908	0.77	+0.8
1,931,893	-		GFF1908	0.78	+0.4
1,931,893	-		GFF1908	0.78	+0.0
1,931,893	-		GFF1908	0.78	-0.9
1,931,893	-		GFF1908	0.78	-1.3
1,931,893	-		GFF1908	0.78	+0.1
1,931,951	+		GFF1908	0.84	-1.3
1,931,951	+		GFF1908	0.84	-0.5
1,931,951	+		GFF1908	0.84	+0.6
1,931,956	+		GFF1908	0.85	-1.1
1,931,956	+		GFF1908	0.85	+0.1
1,931,956	+		GFF1908	0.85	-0.2
1,931,959	-		GFF1908	0.85	+0.4
1,931,964	-		GFF1908	0.85	-1.7
1,931,966	-		GFF1908	0.86	+0.4
1,931,966	-		GFF1908	0.86	-1.0
1,932,022	-				-1.2
1,932,023	-				+1.1
1,932,039	+				-0.3
1,932,044	+				-1.5
1,932,049	+				+0.8
1,932,052	-				+0.9
1,932,052	-				+0.9
1,932,052	-				+0.0
1,932,052	-				-0.8
1,932,052	-				+0.1
1,932,057	-				+0.3
1,932,059	+				-0.3
1,932,067	-				+0.1
1,932,067	-				+1.0
1,932,067	-				-0.6
1,932,067	-				+0.2
1,932,067	-				+0.3
1,932,069	+				-0.6
1,932,069	+				+0.2
1,932,070	+				-0.4
1,932,070	+				-0.4
1,932,077	-				+0.5
1,932,078	-				-0.8
1,932,078	-				-0.1
1,932,078	-				+0.1
1,932,078	-				+1.2
1,932,109	+				+1.2
1,932,109	+				+0.0
1,932,116	-				-0.4
1,932,117	-				-0.8
1,932,117	-				-0.8
1,932,117	-				-1.3
1,932,118	-				+0.6
1,932,119	+				-1.8
1,932,127	-				-2.4
1,932,129	-				-2.1
1,932,145	-		GFF1909	0.12	-1.7
1,932,255	-		GFF1909	0.51	+0.8
1,932,265	-		GFF1909	0.55	-1.9
1,932,278	+		GFF1909	0.59	-0.6
1,932,296	+		GFF1909	0.66	-1.3
1,932,300	+		GFF1909	0.67	-1.3
1,932,305	+		GFF1909	0.69	-1.6
1,932,305	+		GFF1909	0.69	-1.7
1,932,305	+		GFF1909	0.69	-1.8
1,932,305	+		GFF1909	0.69	-1.1
1,932,305	+		GFF1909	0.69	-2.8
1,932,305	+		GFF1909	0.69	-2.5
1,932,305	+		GFF1909	0.69	-2.6
1,932,305	+		GFF1909	0.69	-0.3
1,932,305	+		GFF1909	0.69	-2.1
1,932,305	+		GFF1909	0.69	-1.5
1,932,305	+		GFF1909	0.69	-0.7
1,932,305	+		GFF1909	0.69	-2.0
1,932,305	+		GFF1909	0.69	-1.1
1,932,305	+		GFF1909	0.69	-3.5
1,932,305	+		GFF1909	0.69	-2.9
1,932,305	+		GFF1909	0.69	-1.3
1,932,305	+		GFF1909	0.69	-0.6
1,932,305	+		GFF1909	0.69	-1.8
1,932,305	+		GFF1909	0.69	-1.1
1,932,305	+		GFF1909	0.69	-2.2
1,932,305	+		GFF1909	0.69	-1.3
1,932,313	-		GFF1909	0.72	-2.0
1,932,313	-		GFF1909	0.72	-1.7
1,932,313	-		GFF1909	0.72	-2.9
1,932,313	-		GFF1909	0.72	-0.3
1,932,313	-		GFF1909	0.72	-2.3
1,932,313	-		GFF1909	0.72	-2.9
1,932,313	-		GFF1909	0.72	-0.6
1,932,313	-		GFF1909	0.72	-2.4
1,932,313	-		GFF1909	0.72	-0.8
1,932,313	-		GFF1909	0.72	-2.6
1,932,313	-		GFF1909	0.72	-2.0
1,932,313	-		GFF1909	0.72	-2.4
1,932,313	-		GFF1909	0.72	-1.2
1,932,313	-		GFF1909	0.72	-3.2
1,932,313	-		GFF1909	0.72	-3.2
1,932,313	-		GFF1909	0.72	-3.2
1,932,313	-		GFF1909	0.72	-1.7
1,932,313	-		GFF1909	0.72	-1.7
1,932,313	-		GFF1909	0.72	-2.6
1,932,313	-		GFF1909	0.72	-2.2
1,932,313	-		GFF1909	0.72	-1.8
1,932,314	-		GFF1909	0.72	-1.5
1,932,314	-		GFF1909	0.72	-2.5
1,932,324	+		GFF1909	0.76	-0.6
1,932,325	+		GFF1909	0.76	-1.2
1,932,331	+		GFF1909	0.78	-1.9
1,932,332	-		GFF1909	0.79	-0.4
1,932,359	-		GFF1909	0.89	-2.6
1,932,371	-				-1.8
1,932,373	+				-0.4
1,932,402	-				-0.1
1,932,404	-				+0.1
1,932,406	-				-0.4
1,932,407	-				-1.1
1,932,498	+				-0.6