Strain Fitness in Sphingobium sp. HT1-2 around GFF1860

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,888,083	-		GFF1858	0.48	-0.3
1,888,101	+		GFF1858	0.51	-0.9
1,888,101	+		GFF1858	0.51	-1.4
1,888,138	+		GFF1858	0.56	-1.4
1,888,146	+		GFF1858	0.57	+0.6
1,888,146	+		GFF1858	0.57	-1.2
1,888,154	-		GFF1858	0.58	-0.4
1,888,157	+		GFF1858	0.58	-1.5
1,888,185	+		GFF1858	0.62	-0.4
1,888,204	+		GFF1858	0.65	-0.5
1,888,212	-		GFF1858	0.66	-0.9
1,888,308	+		GFF1858	0.79	-0.6
1,888,311	-		GFF1858	0.80	-1.1
1,888,316	-		GFF1858	0.80	-1.1
1,888,430	+				-0.9
1,888,447	+				-0.8
1,888,511	-				-2.1
1,888,559	-		GFF1859	0.17	-0.8
1,888,571	-		GFF1859	0.19	-2.0
1,888,628	+		GFF1859	0.28	-0.5
1,888,636	-		GFF1859	0.29	-0.9
1,888,653	+		GFF1859	0.32	-0.7
1,888,661	-		GFF1859	0.33	-1.7
1,888,663	-		GFF1859	0.33	-1.2
1,888,676	-		GFF1859	0.35	-0.5
1,888,708	-		GFF1859	0.40	-0.7
1,888,743	+		GFF1859	0.46	-0.9
1,888,744	-		GFF1859	0.46	-0.5
1,888,749	+		GFF1859	0.47	-0.9
1,888,749	-		GFF1859	0.47	-0.4
1,888,751	-		GFF1859	0.47	-0.9
1,888,757	-		GFF1859	0.48	-0.3
1,888,766	+		GFF1859	0.50	-1.2
1,888,776	+		GFF1859	0.51	-0.6
1,888,791	+		GFF1859	0.53	+0.1
1,888,791	+		GFF1859	0.53	-0.4
1,888,791	+		GFF1859	0.53	-0.3
1,888,791	+		GFF1859	0.53	+1.3
1,888,791	+		GFF1859	0.53	-1.5
1,888,799	-		GFF1859	0.55	+0.7
1,888,799	-		GFF1859	0.55	-2.0
1,888,799	-		GFF1859	0.55	-0.3
1,888,827	+		GFF1859	0.59	-0.3
1,888,857	+		GFF1859	0.64	-2.0
1,888,862	+		GFF1859	0.65	-1.1
1,888,864	+		GFF1859	0.65	+0.1
1,888,875	+		GFF1859	0.67	-0.3
1,888,943	+		GFF1859	0.78	-0.5
1,888,976	+		GFF1859	0.83	-0.7
1,889,038	+				-0.3
1,889,039	-				-0.6
1,889,090	+				-2.0
1,889,119	+				-1.5
1,889,124	+				-0.7
1,889,124	+				-0.4
1,889,124	+				-1.5
1,889,124	+				-0.3
1,889,124	+				-0.8
1,889,124	+				-0.3
1,889,124	+				-0.3
1,889,124	+				-0.1
1,889,124	+				+0.7
1,889,124	+				-1.0
1,889,124	+				-0.8
1,889,129	+				-0.2
1,889,129	+				-1.2
1,889,132	-				-1.0
1,889,132	-				+0.5
1,889,132	-				-1.2
1,889,132	-				-0.5
1,889,132	-				-1.3
1,889,132	-				+0.2
1,889,132	-				-1.0
1,889,137	-				+0.3
1,889,148	-				-2.2
1,889,163	-				-0.4
1,889,170	+				+0.2
1,889,178	-				-0.4
1,889,199	-				-0.7
1,889,227	+		GFF1860	0.11	-1.2
1,889,229	+		GFF1860	0.11	-0.5
1,889,230	-		GFF1860	0.11	-0.4
1,889,230	-		GFF1860	0.11	-0.6
1,889,235	-		GFF1860	0.12	-0.6
1,889,235	-		GFF1860	0.12	+0.3
1,889,239	+		GFF1860	0.12	-0.7
1,889,273	-		GFF1860	0.14	-0.5
1,889,291	-		GFF1860	0.16	-0.5
1,889,298	+		GFF1860	0.16	-1.6
1,889,306	-		GFF1860	0.17	-0.9
1,889,350	+		GFF1860	0.20	-0.9
1,889,394	-		GFF1860	0.24	-0.5
1,889,479	+		GFF1860	0.30	-0.3
1,889,480	+		GFF1860	0.30	-0.6
1,889,480	+		GFF1860	0.30	-0.5
1,889,487	-		GFF1860	0.31	-1.2
1,889,487	-		GFF1860	0.31	-0.8
1,889,487	-		GFF1860	0.31	-0.3
1,889,488	-		GFF1860	0.31	-0.3
1,889,527	+		GFF1860	0.34	-1.0
1,889,541	+		GFF1860	0.35	+0.2
1,889,543	+		GFF1860	0.35	-0.2
1,889,543	+		GFF1860	0.35	+0.7
1,889,546	-		GFF1860	0.35	-1.2
1,889,577	-		GFF1860	0.38	-0.8
1,889,612	-		GFF1860	0.40	-0.3
1,889,673	-		GFF1860	0.45	-0.4
1,889,678	+		GFF1860	0.45	-1.3
1,889,707	-		GFF1860	0.48	-1.0
1,889,707	-		GFF1860	0.48	-0.7
1,889,716	+		GFF1860	0.48	-0.4
1,889,779	-		GFF1860	0.53	+0.7
1,889,785	+		GFF1860	0.54	-1.0
1,889,789	+		GFF1860	0.54	-1.2
1,889,817	-		GFF1860	0.56	-0.7
1,889,817	-		GFF1860	0.56	-0.6
1,889,817	-		GFF1860	0.56	-0.3
1,889,817	-		GFF1860	0.56	-0.9
1,889,838	+		GFF1860	0.58	-0.3
1,889,838	-		GFF1860	0.58	-0.3
1,889,860	-		GFF1860	0.59	-0.5
1,889,868	-		GFF1860	0.60	-1.1
1,889,868	-		GFF1860	0.60	-1.3
1,889,906	+		GFF1860	0.63	-0.9
1,889,906	+		GFF1860	0.63	-1.0
1,889,906	+		GFF1860	0.63	+1.4
1,889,914	-		GFF1860	0.63	-1.6
1,889,934	+		GFF1860	0.65	-0.3
1,889,934	+		GFF1860	0.65	-1.6
1,889,934	+		GFF1860	0.65	-1.4
1,889,934	+		GFF1860	0.65	-1.7
1,889,934	+		GFF1860	0.65	+0.7
1,889,934	+		GFF1860	0.65	-0.2
1,889,934	+		GFF1860	0.65	-0.7
1,889,934	+		GFF1860	0.65	-0.8
1,889,934	+		GFF1860	0.65	+0.7
1,889,934	+		GFF1860	0.65	-0.4
1,889,934	+		GFF1860	0.65	-0.4
1,889,934	+		GFF1860	0.65	-0.4
1,889,934	+		GFF1860	0.65	-0.3
1,889,934	+		GFF1860	0.65	-0.3
1,889,934	+		GFF1860	0.65	-0.3
1,889,942	-		GFF1860	0.66	-1.5
1,889,942	-		GFF1860	0.66	+0.1
1,889,942	-		GFF1860	0.66	-1.1
1,889,942	-		GFF1860	0.66	-1.2
1,889,942	-		GFF1860	0.66	-1.3
1,889,942	-		GFF1860	0.66	-0.1
1,889,942	-		GFF1860	0.66	-0.8
1,889,942	-		GFF1860	0.66	-1.2
1,889,942	-		GFF1860	0.66	-0.6
1,889,942	-		GFF1860	0.66	-0.5
1,889,942	-		GFF1860	0.66	-0.8
1,889,942	-		GFF1860	0.66	-1.4
1,889,949	-		GFF1860	0.66	-0.3
1,889,977	+		GFF1860	0.68	-1.5
1,889,982	-		GFF1860	0.69	-1.1
1,890,000	-		GFF1860	0.70	-0.4
1,890,163	-		GFF1860	0.82	-1.0
1,890,185	+		GFF1860	0.84	+0.2
1,890,193	+		GFF1860	0.85	-0.4
1,890,204	+		GFF1860	0.86	-0.6
1,890,204	+		GFF1860	0.86	-0.8
1,890,204	+		GFF1860	0.86	-0.2
1,890,208	+		GFF1860	0.86	-0.3
1,890,212	-		GFF1860	0.86	-0.9
1,890,212	-		GFF1860	0.86	-1.1
1,890,212	-		GFF1860	0.86	-0.6
1,890,212	-		GFF1860	0.86	-0.8
1,890,212	-		GFF1860	0.86	-0.5
1,890,212	-		GFF1860	0.86	-0.8
1,890,212	-		GFF1860	0.86	-0.4
1,890,216	-		GFF1860	0.86	-0.4
1,890,236	+		GFF1860	0.88	-0.8
1,890,236	+		GFF1860	0.88	-2.0
1,890,236	+		GFF1860	0.88	-0.8
1,890,236	+		GFF1860	0.88	-0.5
1,890,238	+		GFF1860	0.88	-1.0
1,890,238	+		GFF1860	0.88	-1.1
1,890,244	-		GFF1860	0.89	-0.3
1,890,244	-		GFF1860	0.89	-0.7
1,890,331	+				-1.4
1,890,346	+				-1.2
1,890,354	-				+0.2
1,890,354	-				+0.6
1,890,407	-				+0.2
1,890,411	+				-1.1
1,890,411	+				-1.1
1,890,414	-				-0.6
1,890,419	-				-1.2
1,890,419	-				-0.6
1,890,419	-				-1.3
1,890,419	-				+0.5
1,890,419	-				-0.3
1,890,419	-				-1.2
1,890,419	-				+0.2
1,890,419	-				-1.1
1,890,419	-				-2.0
1,890,465	+				-0.7
1,890,465	+				-0.3
1,890,465	-				+2.0
1,890,473	-				-0.3
1,890,473	-				-0.6
1,890,488	+				-2.9
1,890,488	+				+0.5
1,890,491	-				+0.4
1,890,496	-				-0.4
1,890,496	-				+0.2
1,890,518	-				-0.6
1,890,562	-				+0.7
1,890,562	-				+0.7
1,890,575	-				+0.6
1,890,575	-				+0.5
1,890,577	+				-1.0
1,890,577	-				+0.2
1,890,588	+				-1.5
1,890,596	-				-2.0
1,890,608	-				-1.3
1,890,617	+				-0.5
1,890,617	+				-0.6
1,890,617	+				-0.8
1,890,625	-				+0.2
1,890,641	-				-0.6
1,890,643	+				-1.0
1,890,659	-				-1.7
1,890,659	-				-0.5
1,890,676	-				-1.3
1,890,677	-				+0.1
1,890,693	-				-0.4
1,890,696	+				-1.2
1,890,696	+				-0.3
1,890,704	-				+0.1
1,890,704	-				-1.2
1,890,704	-				-1.8
1,890,730	+				+1.3
1,890,730	+				-0.9
1,890,770	+				-0.4
1,890,785	+				+0.4
1,890,785	+				-2.0
1,890,888	-				+1.3
1,890,911	+				-0.0
1,890,954	-				-1.1
1,890,956	+				-0.9
1,890,958	-				-0.2
1,890,964	-				+0.6
1,890,964	-				-0.8
1,890,990	+				-0.0
1,891,006	-				+0.2
1,891,011	+				+0.4
1,891,015	+				-0.2
1,891,017	-				-1.4
1,891,018	-				-0.6
1,891,021	-				-1.0
1,891,036	+				-0.3
1,891,044	-				-0.6
1,891,056	+				+1.1
1,891,056	-				-0.2
1,891,056	-				+0.8
1,891,061	+				+1.1
1,891,065	-				+1.3
1,891,100	-		GFF1862	0.11	+0.2
1,891,113	-		GFF1862	0.14	+0.8
1,891,121	+		GFF1862	0.15	-0.4
1,891,124	+		GFF1862	0.16	-1.2
1,891,126	+		GFF1862	0.16	-0.4
1,891,145	+		GFF1862	0.20	+1.7
1,891,145	+		GFF1862	0.20	-0.2
1,891,153	-		GFF1862	0.22	+0.8
1,891,153	-		GFF1862	0.22	-1.4
1,891,153	-		GFF1862	0.22	+0.4
1,891,158	-		GFF1862	0.23	+1.3
1,891,158	-		GFF1862	0.23	-0.8
1,891,163	-		GFF1862	0.24	-0.8
1,891,173	+		GFF1862	0.26	+2.3
1,891,188	+		GFF1862	0.29	-0.0
1,891,189	+		GFF1862	0.29	+0.6
1,891,189	+		GFF1862	0.29	+0.1
1,891,197	-		GFF1862	0.30	+0.3
1,891,197	-		GFF1862	0.30	-0.9
1,891,197	-		GFF1862	0.30	-1.7
1,891,228	-		GFF1862	0.36	+0.8
1,891,241	+		GFF1862	0.39	+1.4
1,891,241	+		GFF1862	0.39	+0.0
1,891,243	-		GFF1862	0.39	-0.8
1,891,255	+		GFF1862	0.42	-0.1
1,891,255	+		GFF1862	0.42	-0.8
1,891,255	+		GFF1862	0.42	-1.4
1,891,263	-		GFF1862	0.43	+0.3
1,891,295	+		GFF1862	0.50	+1.5
1,891,295	+		GFF1862	0.50	-1.0
1,891,303	-		GFF1862	0.51	+0.4
1,891,303	-		GFF1862	0.51	-1.0
1,891,314	+		GFF1862	0.53	+0.1
1,891,325	+		GFF1862	0.55	-0.2
1,891,330	+		GFF1862	0.56	+0.4
1,891,333	-		GFF1862	0.57	+1.6
1,891,338	-		GFF1862	0.58	-0.2
1,891,338	-		GFF1862	0.58	+0.3
1,891,384	-		GFF1862	0.67	-0.9
1,891,385	-		GFF1862	0.67	+0.8