Strain Fitness in Sphingobium sp. HT1-2 around GFF1751

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,777,364	+		GFF1749	0.86	-1.4
1,777,372	-		GFF1749	0.86	+1.9
1,777,374	+		GFF1749	0.86	-1.9
1,777,374	+		GFF1749	0.86	-0.1
1,777,374	+		GFF1749	0.86	-1.6
1,777,377	-		GFF1749	0.87	-0.8
1,777,377	-		GFF1749	0.87	-1.2
1,777,382	-		GFF1749	0.87	-0.7
1,777,382	-		GFF1749	0.87	-2.0
1,777,382	-		GFF1749	0.87	+0.3
1,777,390	+		GFF1749	0.87	-1.0
1,777,393	-		GFF1749	0.88	+0.6
1,777,433	+		GFF1749	0.90	+0.8
1,777,441	+				-1.8
1,777,463	+				+0.7
1,777,471	+				+0.2
1,777,471	-				+0.2
1,777,478	+				+1.8
1,777,478	+				-1.4
1,777,486	-				-1.8
1,777,493	+				+0.6
1,777,493	+				-1.0
1,777,501	-				-0.3
1,777,501	-				+1.3
1,777,501	-				+0.4
1,777,511	-				+0.0
1,777,517	+				+1.7
1,777,517	+				-0.2
1,777,518	-				-0.8
1,777,525	-				-1.3
1,777,527	+				-0.0
1,777,543	+				+0.2
1,777,549	+				-1.7
1,777,549	+				+0.2
1,777,549	+				-0.9
1,777,549	+				-0.1
1,777,549	+				+1.2
1,777,549	+				+0.8
1,777,549	+				-1.3
1,777,549	+				-0.7
1,777,549	+				+0.4
1,777,556	+				-0.3
1,777,557	-				-0.4
1,777,557	-				-0.4
1,777,557	-				-0.8
1,777,557	-				+0.2
1,777,557	-				-1.0
1,777,557	-				+0.4
1,777,557	-				+0.2
1,777,557	-				-0.4
1,777,557	-				-0.8
1,777,580	+				-1.2
1,777,590	+				-1.0
1,777,590	+				+0.6
1,777,593	+				-0.6
1,777,593	+				-1.7
1,777,593	+				+0.5
1,777,596	-				+0.7
1,777,598	-				-0.1
1,777,598	-				-0.4
1,777,600	+				-0.9
1,777,601	-				-0.1
1,777,606	-				+1.1
1,777,606	-				+0.1
1,777,608	-				-0.8
1,777,616	+				-0.7
1,777,651	+				-0.6
1,777,677	+				-0.0
1,777,707	+				-0.7
1,777,710	+				-0.8
1,777,713	-				+0.9
1,777,718	-				+0.1
1,777,718	-				-0.9
1,777,718	-				-1.0
1,777,718	-				+0.5
1,777,718	-				-0.7
1,777,755	+				-0.4
1,777,772	-		GFF1750	0.10	-0.0
1,777,800	+		GFF1750	0.15	-0.0
1,777,808	-		GFF1750	0.16	+1.0
1,777,808	-		GFF1750	0.16	+1.5
1,777,814	+		GFF1750	0.17	-0.0
1,777,814	+		GFF1750	0.17	+1.6
1,777,818	-		GFF1750	0.18	-0.4
1,777,822	+		GFF1750	0.19	-0.7
1,777,822	+		GFF1750	0.19	+0.5
1,777,822	+		GFF1750	0.19	-1.7
1,777,849	-		GFF1750	0.23	-0.8
1,777,866	+		GFF1750	0.26	-1.4
1,777,920	-		GFF1750	0.35	-0.7
1,777,930	-		GFF1750	0.37	+0.7
1,777,934	+		GFF1750	0.37	-0.1
1,777,942	-		GFF1750	0.39	-1.2
1,777,952	-		GFF1750	0.40	-1.6
1,778,008	-		GFF1750	0.50	-1.0
1,778,037	+		GFF1750	0.55	+0.5
1,778,037	+		GFF1750	0.55	-1.1
1,778,048	+		GFF1750	0.57	-0.5
1,778,087	-		GFF1750	0.63	+0.2
1,778,087	-		GFF1750	0.63	-1.3
1,778,094	+		GFF1750	0.64	-1.9
1,778,094	+		GFF1750	0.64	-1.4
1,778,094	+		GFF1750	0.64	-0.1
1,778,102	-		GFF1750	0.66	-0.8
1,778,102	-		GFF1750	0.66	+0.9
1,778,102	-		GFF1750	0.66	-1.2
1,778,102	-		GFF1750	0.66	+1.2
1,778,104	+		GFF1750	0.66	+0.2
1,778,104	-		GFF1750	0.66	+0.2
1,778,121	+		GFF1750	0.69	+0.3
1,778,138	+		GFF1750	0.72	-0.9
1,778,138	-		GFF1750	0.72	-0.9
1,778,144	+		GFF1750	0.73	+0.3
1,778,153	+		GFF1750	0.74	+1.3
1,778,160	+		GFF1750	0.75	-0.4
1,778,160	+		GFF1750	0.75	-0.2
1,778,160	+		GFF1750	0.75	-0.5
1,778,161	-		GFF1750	0.76	-0.9
1,778,161	-		GFF1750	0.76	-1.2
1,778,161	-		GFF1750	0.76	+1.2
1,778,161	-		GFF1750	0.76	-1.3
1,778,161	-		GFF1750	0.76	-1.7
1,778,168	-		GFF1750	0.77	-0.7
1,778,168	-		GFF1750	0.77	-0.4
1,778,206	-		GFF1750	0.83	-1.0
1,778,207	-		GFF1750	0.83	+0.5
1,778,237	-		GFF1750	0.88	+0.4
1,778,255	+				-1.5
1,778,263	-				-0.4
1,778,263	-				+1.0
1,778,270	-				+0.3
1,778,313	+				-2.8
1,778,313	+				-1.7
1,778,315	+				-0.0
1,778,318	+				-1.4
1,778,321	-				-0.3
1,778,323	+				-1.0
1,778,323	+				+0.0
1,778,323	+				-0.3
1,778,323	+				+0.6
1,778,323	+				-1.4
1,778,323	+				-0.1
1,778,323	+				-1.1
1,778,323	+				+0.2
1,778,326	-				-0.3
1,778,328	+				-1.1
1,778,331	-				-0.0
1,778,331	-				-0.7
1,778,331	-				+0.7
1,778,331	-				+1.2
1,778,331	-				+1.3
1,778,331	-				-0.7
1,778,336	+				+1.9
1,778,336	-				+1.6
1,778,337	+				-0.1
1,778,339	-				-0.2
1,778,339	-				-0.9
1,778,345	-				-0.5
1,778,367	+				+0.3
1,778,367	+				+0.6
1,778,367	+				+0.2
1,778,370	-				+0.1
1,778,370	-				-0.0
1,778,375	-				-2.1
1,778,375	-				-1.2
1,778,375	-				-0.8
1,778,375	-				+0.5
1,778,388	+				-1.2
1,778,393	+				-2.1
1,778,393	+				+0.7
1,778,393	+				-0.7
1,778,411	+				+1.5
1,778,419	-				+1.7
1,778,419	-				-0.4
1,778,460	-		GFF1751	0.10	-0.7
1,778,462	+		GFF1751	0.11	-0.7
1,778,475	-		GFF1751	0.12	-0.3
1,778,475	-		GFF1751	0.12	-0.4
1,778,475	-		GFF1751	0.12	+0.7
1,778,485	-		GFF1751	0.13	-0.9
1,778,490	-		GFF1751	0.14	-2.6
1,778,525	+		GFF1751	0.17	-0.8
1,778,548	+		GFF1751	0.20	-1.4
1,778,556	-		GFF1751	0.21	+0.2
1,778,581	+		GFF1751	0.23	-2.2
1,778,589	-		GFF1751	0.24	+0.5
1,778,595	+		GFF1751	0.25	-0.0
1,778,628	+		GFF1751	0.28	-0.5
1,778,628	+		GFF1751	0.28	-1.6
1,778,628	+		GFF1751	0.28	-0.2
1,778,628	+		GFF1751	0.28	-1.1
1,778,628	+		GFF1751	0.28	+0.7
1,778,628	+		GFF1751	0.28	-1.4
1,778,636	-		GFF1751	0.29	-0.3
1,778,636	-		GFF1751	0.29	-1.2
1,778,636	-		GFF1751	0.29	-0.1
1,778,636	-		GFF1751	0.29	-0.1
1,778,641	+		GFF1751	0.30	+0.7
1,778,649	-		GFF1751	0.31	-0.0
1,778,665	+		GFF1751	0.32	-2.8
1,778,672	-		GFF1751	0.33	-1.2
1,778,714	-		GFF1751	0.38	+1.0
1,778,716	+		GFF1751	0.38	-1.7
1,778,716	+		GFF1751	0.38	-2.3
1,778,724	-		GFF1751	0.39	+0.3
1,778,724	-		GFF1751	0.39	-0.9
1,778,724	-		GFF1751	0.39	-0.2
1,778,736	-		GFF1751	0.40	+0.0
1,778,743	+		GFF1751	0.41	-0.5
1,778,743	+		GFF1751	0.41	-0.8
1,778,751	-		GFF1751	0.42	-1.2
1,778,751	-		GFF1751	0.42	+1.5
1,778,751	-		GFF1751	0.42	-0.3
1,778,751	-		GFF1751	0.42	+1.6
1,778,751	-		GFF1751	0.42	-1.0
1,778,772	+		GFF1751	0.44	-1.5
1,778,775	-		GFF1751	0.44	+0.2
1,778,780	-		GFF1751	0.45	-1.1
1,778,780	-		GFF1751	0.45	-0.7
1,778,804	-		GFF1751	0.47	-0.4
1,778,829	-		GFF1751	0.50	-1.0
1,778,830	+		GFF1751	0.50	-0.0
1,778,830	+		GFF1751	0.50	-0.7
1,778,877	+		GFF1751	0.55	-0.5
1,778,906	+		GFF1751	0.58	-0.3
1,778,906	+		GFF1751	0.58	-0.3
1,778,906	+		GFF1751	0.58	+1.0
1,778,930	+		GFF1751	0.61	-0.4
1,778,938	-		GFF1751	0.62	-0.8
1,778,951	+		GFF1751	0.63	-0.0
1,778,959	-		GFF1751	0.64	-1.2
1,778,960	-		GFF1751	0.64	-1.2
1,778,960	-		GFF1751	0.64	-1.1
1,778,990	+		GFF1751	0.68	+0.2
1,778,998	-		GFF1751	0.68	-1.8
1,779,005	+		GFF1751	0.69	+0.4
1,779,009	+		GFF1751	0.70	-0.3
1,779,009	+		GFF1751	0.70	+0.8
1,779,009	+		GFF1751	0.70	+0.1
1,779,017	-		GFF1751	0.70	-0.4
1,779,017	-		GFF1751	0.70	+0.9
1,779,017	-		GFF1751	0.70	-0.4
1,779,035	+		GFF1751	0.72	-0.0
1,779,035	+		GFF1751	0.72	+0.3
1,779,035	+		GFF1751	0.72	-0.0
1,779,037	-		GFF1751	0.73	+1.2
1,779,037	-		GFF1751	0.73	-0.1
1,779,043	-		GFF1751	0.73	+0.6
1,779,068	+		GFF1751	0.76	-0.6
1,779,076	-		GFF1751	0.77	-0.7
1,779,097	+		GFF1751	0.79	-0.1
1,779,097	+		GFF1751	0.79	-1.2
1,779,099	-		GFF1751	0.79	-0.7
1,779,102	+		GFF1751	0.80	-0.1
1,779,105	-		GFF1751	0.80	-0.3
1,779,105	-		GFF1751	0.80	-0.8
1,779,107	+		GFF1751	0.80	-0.2
1,779,110	-		GFF1751	0.80	+0.5
1,779,115	-		GFF1751	0.81	-2.2
1,779,115	-		GFF1751	0.81	-0.5
1,779,115	-		GFF1751	0.81	-0.2
1,779,117	+		GFF1751	0.81	+0.6
1,779,117	+		GFF1751	0.81	+0.9
1,779,117	+		GFF1751	0.81	+0.4
1,779,117	-		GFF1751	0.81	-1.2
1,779,122	+		GFF1751	0.82	-0.8
1,779,122	+		GFF1751	0.82	-0.3
1,779,125	-		GFF1751	0.82	-1.7
1,779,141	+		GFF1751	0.84	-0.2
1,779,149	-		GFF1751	0.85	-1.2
1,779,160	-		GFF1751	0.86	+0.1
1,779,160	-		GFF1751	0.86	+0.9
1,779,160	-		GFF1751	0.86	-0.2
1,779,184	+		GFF1751	0.88	-0.5
1,779,184	+		GFF1751	0.88	+1.0
1,779,186	+		GFF1751	0.89	-0.9
1,779,186	+		GFF1751	0.89	+0.1
1,779,186	+		GFF1751	0.89	-1.1
1,779,186	+		GFF1751	0.89	+1.0
1,779,186	+		GFF1751	0.89	-0.2
1,779,192	-		GFF1751	0.89	-0.8
1,779,194	-		GFF1751	0.90	-0.8
1,779,194	-		GFF1751	0.90	-1.1
1,779,194	-		GFF1751	0.90	-0.0
1,779,194	-		GFF1751	0.90	-0.4
1,779,194	-		GFF1751	0.90	-0.7
1,779,194	-		GFF1751	0.90	-2.2
1,779,202	-				-0.8
1,779,297	-				+0.8
1,779,301	-				-0.8
1,779,303	+				+1.2
1,779,303	+				-0.5
1,779,303	+				+1.3
1,779,303	+				+0.3
1,779,308	+				-0.9
1,779,311	-				-1.3
1,779,311	-				-1.4
1,779,311	-				-1.1
1,779,318	+				+0.6
1,779,321	-				-0.2
1,779,338	+				-0.8
1,779,338	+				-1.2
1,779,347	-				-0.8
1,779,440	+				-0.4
1,779,446	+				-0.0
1,779,451	+				-0.2
1,779,451	+				+0.2
1,779,454	-				+0.2
1,779,456	+				-0.4
1,779,458	-				-1.6
1,779,459	-				-0.8
1,779,462	-				-1.1
1,779,472	+				-0.8
1,779,472	+				+0.8
1,779,485	+				-0.7
1,779,493	-				+0.3
1,779,493	-				+0.1
1,779,493	-				+0.3
1,779,493	-				+0.2
1,779,494	-				+0.7
1,779,512	+				+0.7
1,779,520	-				-0.4
1,779,561	-				-0.8
1,779,561	-				-0.9
1,779,567	+				+1.6
1,779,572	+				-0.8
1,779,573	+				-0.6
1,779,574	-				-0.7
1,779,580	-				-0.2
1,779,580	-				+1.2
1,779,580	-				-0.2
1,779,580	-				-1.1
1,779,585	+				-0.0
1,779,590	+				-0.3
1,779,605	+				-0.4
1,779,622	+		GFF1752	0.10	-1.1
1,779,624	+		GFF1752	0.10	-0.4
1,779,629	+		GFF1752	0.10	-0.5
1,779,629	+		GFF1752	0.10	-0.7
1,779,632	-		GFF1752	0.11	-1.6
1,779,632	-		GFF1752	0.11	+0.1
1,779,632	-		GFF1752	0.11	-0.7
1,779,637	+		GFF1752	0.11	-1.2
1,779,645	-		GFF1752	0.11	+0.7
1,779,652	+		GFF1752	0.12	-0.6
1,779,652	+		GFF1752	0.12	-0.8
1,779,660	-		GFF1752	0.12	-0.4
1,779,660	-		GFF1752	0.12	-0.3
1,779,660	-		GFF1752	0.12	-0.5
1,779,660	-		GFF1752	0.12	+0.1
1,779,662	+		GFF1752	0.12	+0.6
1,779,662	+		GFF1752	0.12	-0.1
1,779,665	-		GFF1752	0.12	-0.1
1,779,674	+		GFF1752	0.13	-1.2
1,779,707	-		GFF1752	0.14	-0.5
1,779,716	+		GFF1752	0.15	-0.4
1,779,724	-		GFF1752	0.15	-0.9
1,779,728	+		GFF1752	0.15	-1.6
1,779,728	+		GFF1752	0.15	-1.7
1,779,734	+		GFF1752	0.16	-0.2
1,779,741	-		GFF1752	0.16	-1.3
1,779,756	+		GFF1752	0.17	-1.3
1,779,777	+		GFF1752	0.18	-0.4
1,779,784	+		GFF1752	0.18	-0.8
1,779,787	+		GFF1752	0.18	-1.6
1,779,792	-		GFF1752	0.19	+0.2
1,779,799	+		GFF1752	0.19	-2.2
1,779,799	+		GFF1752	0.19	+0.2
1,779,799	+		GFF1752	0.19	-0.3
1,779,799	+		GFF1752	0.19	-0.8
1,779,802	-		GFF1752	0.19	-0.7
1,779,807	-		GFF1752	0.19	-2.0
1,779,807	-		GFF1752	0.19	-1.2
1,779,834	+		GFF1752	0.21	-0.1
1,779,842	-		GFF1752	0.21	-0.1
1,779,847	+		GFF1752	0.21	+1.3
1,779,864	-		GFF1752	0.22	+0.7
1,779,869	+		GFF1752	0.23	-0.5
1,779,869	+		GFF1752	0.23	-1.4
1,779,878	-		GFF1752	0.23	-0.4
1,779,878	-		GFF1752	0.23	-2.2
1,779,879	+		GFF1752	0.23	-1.1
1,779,885	-		GFF1752	0.23	+0.8
1,779,897	-		GFF1752	0.24	+0.7
1,779,914	-		GFF1752	0.25	+1.2
1,779,927	+		GFF1752	0.25	-0.8
1,779,935	-		GFF1752	0.26	-1.8
1,779,956	+		GFF1752	0.27	-1.1
1,779,956	+		GFF1752	0.27	-1.4
1,779,964	+		GFF1752	0.27	-0.8
1,779,964	-		GFF1752	0.27	-1.9
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