Strain Fitness in Sphingobium sp. HT1-2 around GFF1562

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,590,353	+		GFF1559	0.67	-0.8
1,590,353	+		GFF1559	0.67	-0.8
1,590,439	+		GFF1559	0.81	-0.9
1,590,449	+		GFF1559	0.83	-0.4
1,590,479	+		GFF1559	0.88	-2.1
1,590,545	+				-1.1
1,590,546	+				-0.7
1,590,546	+				+0.4
1,590,561	-				+1.3
1,590,607	+				-0.3
1,590,615	-				-0.6
1,590,615	-				-0.4
1,590,617	-				-0.7
1,590,639	-				-1.5
1,590,640	+				-0.6
1,590,644	+				-1.7
1,590,655	+				-1.7
1,590,655	+				-1.0
1,590,656	+				-0.6
1,590,663	-				+1.0
1,590,663	-				-0.9
1,590,670	+				+0.4
1,590,670	+				+0.9
1,590,678	-				-0.6
1,590,680	+				-1.2
1,590,680	+				-0.3
1,590,721	+				-0.4
1,590,736	+				-0.6
1,590,741	+				-0.8
1,590,741	+				-0.9
1,590,741	+				-1.2
1,590,749	-				-0.8
1,590,772	-		GFF1560	0.19	+0.6
1,590,798	+		GFF1560	0.34	-2.5
1,590,798	+		GFF1560	0.34	+0.7
1,590,801	-		GFF1560	0.36	-0.4
1,590,803	+		GFF1560	0.37	+1.4
1,590,806	-		GFF1560	0.39	-0.8
1,590,835	+		GFF1560	0.55	-0.8
1,590,838	+		GFF1560	0.57	-0.2
1,590,838	-		GFF1560	0.57	-0.3
1,590,844	+		GFF1560	0.60	+1.2
1,590,863	-		GFF1560	0.71	-1.7
1,590,901	-				-1.1
1,590,911	+				-2.6
1,590,913	+				+0.9
1,590,913	+				-1.9
1,590,914	-				-0.6
1,590,921	-				+1.1
1,590,921	-				-0.1
1,590,921	-				+0.1
1,590,921	-				-0.4
1,590,921	-				-0.1
1,590,926	-				+0.1
1,590,943	+		GFF1561	0.10	-0.8
1,590,979	+		GFF1561	0.24	-0.9
1,590,979	+		GFF1561	0.24	-0.4
1,590,979	+		GFF1561	0.24	+1.0
1,590,979	+		GFF1561	0.24	-0.4
1,590,979	+		GFF1561	0.24	-0.3
1,590,987	-		GFF1561	0.27	-1.0
1,590,987	-		GFF1561	0.27	-2.0
1,591,009	+		GFF1561	0.35	-1.2
1,591,009	+		GFF1561	0.35	+0.7
1,591,009	+		GFF1561	0.35	-0.6
1,591,009	+		GFF1561	0.35	-0.6
1,591,009	+		GFF1561	0.35	-0.9
1,591,014	+		GFF1561	0.37	-1.1
1,591,017	-		GFF1561	0.38	-0.7
1,591,024	+		GFF1561	0.40	-0.3
1,591,024	+		GFF1561	0.40	-0.3
1,591,032	-		GFF1561	0.43	-1.2
1,591,042	-		GFF1561	0.47	-0.6
1,591,042	-		GFF1561	0.47	-0.3
1,591,061	+		GFF1561	0.54	-0.6
1,591,066	+		GFF1561	0.56	-0.7
1,591,066	+		GFF1561	0.56	-0.3
1,591,071	+		GFF1561	0.58	-1.7
1,591,079	-		GFF1561	0.61	-0.5
1,591,079	-		GFF1561	0.61	-0.4
1,591,082	+		GFF1561	0.62	-0.9
1,591,087	-		GFF1561	0.64	+0.7
1,591,109	+		GFF1561	0.72	-0.3
1,591,109	+		GFF1561	0.72	+0.1
1,591,109	+		GFF1561	0.72	+0.3
1,591,109	+		GFF1561	0.72	-1.9
1,591,109	+		GFF1561	0.72	+0.4
1,591,109	+		GFF1561	0.72	+0.8
1,591,109	+		GFF1561	0.72	+1.0
1,591,109	+		GFF1561	0.72	-0.1
1,591,117	-		GFF1561	0.75	-0.6
1,591,117	-		GFF1561	0.75	+0.1
1,591,117	-		GFF1561	0.75	+0.3
1,591,117	-		GFF1561	0.75	-0.4
1,591,117	-		GFF1561	0.75	-0.4
1,591,117	-		GFF1561	0.75	+1.4
1,591,117	-		GFF1561	0.75	-1.3
1,591,128	+		GFF1561	0.79	-0.9
1,591,130	+		GFF1561	0.80	+0.1
1,591,135	+		GFF1561	0.81	-0.2
1,591,143	-		GFF1561	0.84	+0.3
1,591,143	-		GFF1561	0.84	+0.1
1,591,143	-		GFF1561	0.84	-0.4
1,591,143	-		GFF1561	0.84	-0.3
1,591,143	-		GFF1561	0.84	-0.6
1,591,143	-		GFF1561	0.84	+0.6
1,591,143	-		GFF1561	0.84	+0.7
1,591,148	+		GFF1561	0.86	-1.4
1,591,174	+				+0.2
1,591,175	-				+0.7
1,591,253	+				-0.0
1,591,303	-				-1.2
1,591,310	+				-0.9
1,591,313	-				+1.6
1,591,313	-				+1.1
1,591,313	-				-1.6
1,591,313	-				-1.2
1,591,314	+				-0.6
1,591,318	-				-0.3
1,591,322	-				-1.3
1,591,322	-				+0.3
1,591,322	-				-1.1
1,591,369	-		GFF1562	0.22	+0.6
1,591,406	-		GFF1562	0.33	-3.1
1,591,409	-		GFF1562	0.33	+1.3
1,591,411	+		GFF1562	0.34	-0.4
1,591,418	-		GFF1562	0.36	+0.8
1,591,418	-		GFF1562	0.36	-0.9
1,591,443	-		GFF1562	0.43	-0.7
1,591,479	-		GFF1562	0.53	-0.5
1,591,482	+		GFF1562	0.54	+0.6
1,591,482	+		GFF1562	0.54	+1.1
1,591,492	+		GFF1562	0.56	+0.3
1,591,492	+		GFF1562	0.56	-2.3
1,591,492	+		GFF1562	0.56	+0.9
1,591,500	-		GFF1562	0.59	-1.8
1,591,519	+		GFF1562	0.64	+0.0
1,591,519	+		GFF1562	0.64	-1.2
1,591,523	-		GFF1562	0.65	-0.9
1,591,529	+		GFF1562	0.67	-0.4
1,591,538	+		GFF1562	0.69	-0.6
1,591,542	-		GFF1562	0.70	-0.8
1,591,553	+		GFF1562	0.73	-0.6
1,591,586	-		GFF1562	0.82	-0.8
1,591,587	+		GFF1562	0.83	+1.0
1,591,611	+		GFF1562	0.89	-0.7
1,591,616	+				-0.7
1,591,616	+				+0.6
1,591,616	+				-0.9
1,591,616	+				-0.7
1,591,624	-				+0.3
1,591,624	-				-1.6
1,591,631	+				+0.6
1,591,636	+				-1.0
1,591,645	-				-1.0
1,591,668	-				-0.1
1,591,682	-		GFF1563	0.15	-0.9
1,591,693	+		GFF1563	0.20	-1.6
1,591,693	+		GFF1563	0.20	-0.0
1,591,701	-		GFF1563	0.23	+0.6
1,591,701	-		GFF1563	0.23	-1.2
1,591,701	-		GFF1563	0.23	-0.9
1,591,701	-		GFF1563	0.23	-1.0
1,591,711	-		GFF1563	0.27	+1.3
1,591,711	-		GFF1563	0.27	+0.4
1,591,807	+		GFF1563	0.67	-1.1
1,591,824	+		GFF1563	0.74	+0.7
1,591,846	+		GFF1563	0.83	+0.7
1,591,911	+				-0.3
1,591,926	+				-0.0
1,591,931	+				-0.7
1,591,931	+				-0.1
1,591,932	+				+0.9
1,591,932	+				-0.8
1,591,932	+				-0.4
1,591,932	+				-0.6
1,591,934	-				-0.4
1,591,936	+				+0.8
1,591,936	+				+0.9
1,591,939	-				-0.2
1,591,939	-				+1.1
1,591,940	-				+2.2
1,591,940	-				+0.3
1,591,940	-				+0.4
1,591,940	-				-1.3
1,591,975	-				-1.2
1,592,008	+				+0.7
1,592,056	+				+0.6
1,592,074	+				+0.5
1,592,109	-		GFF1564	0.11	-0.9
1,592,148	+		GFF1564	0.15	-0.1
1,592,162	-		GFF1564	0.17	-2.4
1,592,167	-		GFF1564	0.17	-1.0
1,592,179	-		GFF1564	0.19	-1.8
1,592,268	+		GFF1564	0.28	-0.8
1,592,268	+		GFF1564	0.28	-0.7
1,592,268	+		GFF1564	0.28	+1.9
1,592,276	-		GFF1564	0.29	-0.9
1,592,276	-		GFF1564	0.29	-2.0
1,592,322	+		GFF1564	0.34	-0.9
1,592,344	+		GFF1564	0.36	-0.1
1,592,352	-		GFF1564	0.37	-2.3
1,592,364	+		GFF1564	0.38	+0.5
1,592,393	+		GFF1564	0.42	+0.5
1,592,393	+		GFF1564	0.42	-1.4
1,592,401	-		GFF1564	0.42	-2.1
1,592,401	-		GFF1564	0.42	-0.1
1,592,401	-		GFF1564	0.42	-0.9
1,592,401	-		GFF1564	0.42	-0.9
1,592,401	-		GFF1564	0.42	+1.3
1,592,401	-		GFF1564	0.42	+0.5
1,592,401	-		GFF1564	0.42	-0.3
1,592,401	-		GFF1564	0.42	+0.5
1,592,401	-		GFF1564	0.42	+0.4
1,592,408	+		GFF1564	0.43	-0.8
1,592,408	-		GFF1564	0.43	-1.1
1,592,416	-		GFF1564	0.44	-0.4
1,592,447	+		GFF1564	0.47	+0.2
1,592,448	+		GFF1564	0.48	-0.8
1,592,456	-		GFF1564	0.48	-1.0
1,592,456	-		GFF1564	0.48	-0.4
1,592,456	-		GFF1564	0.48	-1.0
1,592,468	+		GFF1564	0.50	-0.4
1,592,470	-		GFF1564	0.50	+0.6
1,592,470	-		GFF1564	0.50	-1.1
1,592,470	-		GFF1564	0.50	-0.7
1,592,487	+		GFF1564	0.52	-0.6
1,592,508	+		GFF1564	0.54	-1.3
1,592,560	+		GFF1564	0.60	-1.4
1,592,561	-		GFF1564	0.60	+0.3
1,592,569	-		GFF1564	0.61	-0.9
1,592,585	-		GFF1564	0.62	+0.3
1,592,598	+		GFF1564	0.64	-0.0
1,592,603	+		GFF1564	0.64	-0.4
1,592,603	+		GFF1564	0.64	-0.7
1,592,603	+		GFF1564	0.64	-1.1
1,592,604	+		GFF1564	0.64	+0.3
1,592,606	-		GFF1564	0.65	+1.0
1,592,610	+		GFF1564	0.65	-0.3
1,592,616	-		GFF1564	0.66	+1.9
1,592,620	+		GFF1564	0.66	+0.7
1,592,628	-		GFF1564	0.67	-1.3
1,592,628	-		GFF1564	0.67	-1.7