Strain Fitness in Sphingobium sp. HT1-2 around GFF1541

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,572,001	+		GFF1539	0.16	-0.2
1,572,046	+		GFF1539	0.26	-1.7
1,572,056	+		GFF1539	0.28	-0.2
1,572,056	+		GFF1539	0.28	-1.1
1,572,063	+		GFF1539	0.30	-1.8
1,572,063	+		GFF1539	0.30	+1.0
1,572,068	+		GFF1539	0.31	+1.3
1,572,068	+		GFF1539	0.31	+0.6
1,572,071	-		GFF1539	0.32	+0.8
1,572,073	+		GFF1539	0.32	-0.1
1,572,074	-		GFF1539	0.32	-1.1
1,572,074	-		GFF1539	0.32	-0.8
1,572,074	-		GFF1539	0.32	-0.5
1,572,076	-		GFF1539	0.33	-1.3
1,572,076	-		GFF1539	0.33	-0.3
1,572,076	-		GFF1539	0.33	+0.8
1,572,076	-		GFF1539	0.33	+0.7
1,572,076	-		GFF1539	0.33	-0.3
1,572,078	+		GFF1539	0.33	-0.4
1,572,086	-		GFF1539	0.35	-1.2
1,572,086	-		GFF1539	0.35	+1.1
1,572,087	+		GFF1539	0.35	-0.1
1,572,087	+		GFF1539	0.35	+1.7
1,572,095	-		GFF1539	0.37	-0.1
1,572,095	-		GFF1539	0.37	-1.2
1,572,106	-		GFF1539	0.40	-0.3
1,572,106	-		GFF1539	0.40	+0.8
1,572,117	-		GFF1539	0.42	-0.8
1,572,117	-		GFF1539	0.42	+0.7
1,572,134	-		GFF1539	0.46	+1.3
1,572,136	+		GFF1539	0.46	+0.5
1,572,144	-		GFF1539	0.48	+0.2
1,572,173	+		GFF1539	0.55	+1.7
1,572,173	+		GFF1539	0.55	-0.5
1,572,173	+		GFF1539	0.55	+0.8
1,572,178	+		GFF1539	0.56	-1.0
1,572,181	-		GFF1539	0.57	+1.2
1,572,191	-		GFF1539	0.59	-0.9
1,572,202	-		GFF1539	0.61	-0.1
1,572,205	+		GFF1539	0.62	-0.6
1,572,213	+		GFF1539	0.64	+0.3
1,572,218	-		GFF1539	0.65	-0.5
1,572,226	-		GFF1539	0.67	-1.0
1,572,253	+		GFF1539	0.73	+1.1
1,572,307	+		GFF1539	0.85	-0.9
1,572,307	+		GFF1539	0.85	+0.6
1,572,313	-		GFF1539	0.87	-1.5
1,572,315	-		GFF1539	0.87	+0.9
1,572,317	+		GFF1539	0.88	+0.6
1,572,320	-		GFF1539	0.88	-0.9
1,572,325	-		GFF1539	0.89	-1.8
1,572,325	-		GFF1539	0.89	-0.6
1,572,366	+				-0.5
1,572,366	+				-0.4
1,572,392	-				-0.3
1,572,392	-				-0.8
1,572,407	-				-1.3
1,572,420	+				-2.3
1,572,420	+				-1.1
1,572,425	+				+0.9
1,572,428	-				-0.9
1,572,429	+				-1.6
1,572,430	+				-1.0
1,572,433	-				+0.3
1,572,435	+				+1.0
1,572,437	-				-0.5
1,572,448	-				-1.0
1,572,448	-				-0.4
1,572,472	+				-1.2
1,572,482	+				-0.8
1,572,482	+				-1.0
1,572,482	+				-1.9
1,572,482	+				+0.2
1,572,482	+				-0.5
1,572,490	-				+0.6
1,572,490	-				+0.3
1,572,490	-				-1.4
1,572,517	+				-1.7
1,572,517	+				+0.1
1,572,517	+				-0.8
1,572,523	+				+0.5
1,572,544	-				+0.2
1,572,549	+				-0.3
1,572,549	+				-1.1
1,572,551	+				-1.9
1,572,573	+				+1.1
1,572,581	-				-1.7
1,572,596	-		GFF1540	0.13	-0.0
1,572,596	-		GFF1540	0.13	-1.2
1,572,630	+		GFF1540	0.21	+1.2
1,572,649	+		GFF1540	0.25	+0.9
1,572,649	+		GFF1540	0.25	-0.3
1,572,649	+		GFF1540	0.25	-0.7
1,572,657	-		GFF1540	0.27	-0.8
1,572,657	-		GFF1540	0.27	+0.6
1,572,657	-		GFF1540	0.27	-0.5
1,572,657	-		GFF1540	0.27	-1.6
1,572,659	+		GFF1540	0.28	-0.5
1,572,678	+		GFF1540	0.32	-1.4
1,572,696	+		GFF1540	0.37	+0.9
1,572,700	+		GFF1540	0.38	-0.2
1,572,700	+		GFF1540	0.38	+0.2
1,572,700	+		GFF1540	0.38	-0.9
1,572,703	-		GFF1540	0.38	+0.5
1,572,703	-		GFF1540	0.38	-0.3
1,572,708	-		GFF1540	0.40	-0.1
1,572,708	-		GFF1540	0.40	-1.3
1,572,708	-		GFF1540	0.40	-1.2
1,572,708	-		GFF1540	0.40	+0.3
1,572,708	-		GFF1540	0.40	+0.2
1,572,708	-		GFF1540	0.40	+0.7
1,572,711	+		GFF1540	0.40	-1.4
1,572,722	-		GFF1540	0.43	-1.3
1,572,815	+		GFF1540	0.65	-0.2
1,572,824	+		GFF1540	0.67	-0.8
1,572,835	+		GFF1540	0.70	-0.6
1,572,835	+		GFF1540	0.70	-0.2
1,572,840	+		GFF1540	0.71	-0.8
1,572,843	-		GFF1540	0.72	-0.0
1,572,848	-		GFF1540	0.73	-0.8
1,572,848	-		GFF1540	0.73	-0.7
1,572,911	+		GFF1540	0.88	-0.3
1,572,914	-		GFF1540	0.89	-0.3
1,572,947	+				+0.3
1,572,955	+				-1.9
1,572,958	-				+0.6
1,572,960	+				-0.3
1,572,965	+				-1.2
1,572,968	-				-2.1
1,572,968	-				-0.8
1,572,984	+				+1.4
1,572,992	-				-0.8
1,573,027	+				+0.2
1,573,027	+				-0.5
1,573,031	+				-0.9
1,573,033	-				-0.2
1,573,035	-				+0.3
1,573,035	-				-0.2
1,573,035	-				+0.6
1,573,035	-				-1.3
1,573,035	-				-1.8
1,573,035	-				+0.7
1,573,037	-				+1.2
1,573,037	-				-0.1
1,573,039	-				-0.5
1,573,059	+				+0.7
1,573,067	+		GFF1541	0.10	-1.2
1,573,069	-		GFF1541	0.10	-1.1
1,573,075	-		GFF1541	0.11	-1.1
1,573,075	-		GFF1541	0.11	+0.6
1,573,101	+		GFF1541	0.14	+0.3
1,573,101	+		GFF1541	0.14	-0.8
1,573,102	+		GFF1541	0.14	+1.2
1,573,106	+		GFF1541	0.14	-1.0
1,573,137	-		GFF1541	0.18	-1.0
1,573,172	+		GFF1541	0.22	-0.0
1,573,180	-		GFF1541	0.22	-0.7
1,573,194	-		GFF1541	0.24	-1.3
1,573,195	+		GFF1541	0.24	-0.8
1,573,196	+		GFF1541	0.24	+0.9
1,573,196	+		GFF1541	0.24	+0.3
1,573,203	+		GFF1541	0.25	-1.2
1,573,215	+		GFF1541	0.26	-0.1
1,573,221	+		GFF1541	0.27	-1.1
1,573,223	-		GFF1541	0.27	-2.3
1,573,237	+		GFF1541	0.29	-0.8
1,573,241	-		GFF1541	0.29	-0.9
1,573,243	+		GFF1541	0.29	+0.2
1,573,245	-		GFF1541	0.29	-0.4
1,573,251	-		GFF1541	0.30	+0.6
1,573,266	-		GFF1541	0.32	-1.4
1,573,310	+		GFF1541	0.36	+0.4
1,573,310	+		GFF1541	0.36	+0.7
1,573,310	+		GFF1541	0.36	-2.7
1,573,310	+		GFF1541	0.36	+1.3
1,573,310	+		GFF1541	0.36	-0.3
1,573,310	+		GFF1541	0.36	-0.0
1,573,310	+		GFF1541	0.36	-0.9
1,573,310	+		GFF1541	0.36	+0.2
1,573,310	+		GFF1541	0.36	-0.3
1,573,318	-		GFF1541	0.37	-0.5
1,573,318	-		GFF1541	0.37	-0.4
1,573,318	-		GFF1541	0.37	-1.1
1,573,326	+		GFF1541	0.38	-0.9
1,573,361	-		GFF1541	0.42	+0.6
1,573,365	+		GFF1541	0.42	-0.0
1,573,371	+		GFF1541	0.43	-0.3
1,573,373	-		GFF1541	0.43	-1.4
1,573,421	+		GFF1541	0.48	+0.2
1,573,468	+		GFF1541	0.54	-0.4
1,573,471	-		GFF1541	0.54	-1.2
1,573,472	+		GFF1541	0.54	+0.5
1,573,476	+		GFF1541	0.54	-2.1
1,573,491	+		GFF1541	0.56	-0.1
1,573,499	-		GFF1541	0.57	-1.1
1,573,500	+		GFF1541	0.57	+0.2
1,573,500	+		GFF1541	0.57	-0.4
1,573,500	+		GFF1541	0.57	-0.1
1,573,508	-		GFF1541	0.58	-0.3
1,573,508	-		GFF1541	0.58	+0.0
1,573,508	-		GFF1541	0.58	-0.4
1,573,508	-		GFF1541	0.58	-0.5
1,573,509	-		GFF1541	0.58	+0.1
1,573,529	+		GFF1541	0.60	-0.8
1,573,529	+		GFF1541	0.60	+0.5
1,573,529	+		GFF1541	0.60	-1.7
1,573,529	+		GFF1541	0.60	+0.4
1,573,537	-		GFF1541	0.61	+2.3
1,573,537	-		GFF1541	0.61	+0.3
1,573,537	-		GFF1541	0.61	+0.5
1,573,537	-		GFF1541	0.61	-0.2
1,573,537	-		GFF1541	0.61	+0.0
1,573,537	-		GFF1541	0.61	-0.5
1,573,537	-		GFF1541	0.61	-1.1
1,573,539	+		GFF1541	0.61	+0.6
1,573,572	-		GFF1541	0.65	-1.2
1,573,574	+		GFF1541	0.65	-0.9
1,573,602	-		GFF1541	0.68	-0.3
1,573,616	+		GFF1541	0.69	-0.5
1,573,616	+		GFF1541	0.69	-0.7
1,573,616	+		GFF1541	0.69	+0.1
1,573,624	-		GFF1541	0.70	-0.1
1,573,638	+		GFF1541	0.72	+0.0
1,573,641	+		GFF1541	0.72	-1.0
1,573,657	-		GFF1541	0.74	-0.4
1,573,662	-		GFF1541	0.74	-0.4
1,573,662	-		GFF1541	0.74	-0.3
1,573,668	-		GFF1541	0.75	+0.5
1,573,670	+		GFF1541	0.75	-1.2
1,573,683	+		GFF1541	0.77	-1.0
1,573,692	-		GFF1541	0.78	+0.3
1,573,708	-		GFF1541	0.79	+0.3
1,573,708	-		GFF1541	0.79	-0.8
1,573,720	+		GFF1541	0.81	+0.2
1,573,765	+		GFF1541	0.86	+1.1
1,573,771	+		GFF1541	0.86	+0.7
1,573,779	-		GFF1541	0.87	+0.0
1,573,779	-		GFF1541	0.87	-0.5
1,573,779	-		GFF1541	0.87	-0.3
1,573,779	-		GFF1541	0.87	-1.2
1,573,779	-		GFF1541	0.87	+0.5
1,573,798	+		GFF1541	0.89	-1.3
1,573,816	+				-1.7
1,573,830	+				-0.6
1,573,833	-				+0.4
1,573,835	-				-0.4
1,573,843	-				-0.5
1,573,898	+				-1.2
1,573,906	-				-0.7
1,573,911	-				+0.9
1,573,911	-				-0.8
1,573,931	+				+1.2
1,573,962	+				+0.7
1,573,966	+				+0.4
1,573,970	-				-0.7
1,573,977	+				-1.9
1,573,977	+				-0.8
1,573,985	+				+0.9
1,573,993	-				-1.3
1,573,993	-				-1.4
1,573,998	-				+0.7
1,574,008	-				-0.9
1,574,013	+				+0.3
1,574,032	+				+1.3
1,574,032	-				-0.8
1,574,034	-				-0.2
1,574,048	+				+1.2
1,574,049	+				+0.2
1,574,051	-				-1.9
1,574,051	-				+1.7
1,574,051	-				-0.8
1,574,060	+				-1.4
1,574,084	-				+0.6
1,574,091	-				+0.7
1,574,151	-				-0.0
1,574,151	-				+1.7
1,574,166	+				+0.3
1,574,166	+				-0.2
1,574,174	-				-0.6
1,574,174	-				-0.7
1,574,174	-				-0.6
1,574,174	-				-1.6
1,574,174	-				+0.7
1,574,174	-				+0.7
1,574,184	+				+0.5
1,574,185	+				-0.3
1,574,185	+				-0.8
1,574,195	+				-0.7
1,574,239	+		GFF1542	0.13	-0.3
1,574,247	-		GFF1542	0.14	-1.2
1,574,247	-		GFF1542	0.14	+1.4
1,574,293	-		GFF1542	0.19	-0.5
1,574,298	-		GFF1542	0.19	-0.7
1,574,298	-		GFF1542	0.19	+0.2
1,574,312	+		GFF1542	0.20	+0.1
1,574,312	+		GFF1542	0.20	-0.8
1,574,312	-		GFF1542	0.20	+1.2
1,574,320	-		GFF1542	0.21	-1.2
1,574,329	-		GFF1542	0.22	+0.0
1,574,336	+		GFF1542	0.23	-0.5
1,574,372	+		GFF1542	0.26	-0.4
1,574,374	-		GFF1542	0.27	+0.2
1,574,374	-		GFF1542	0.27	-0.4
1,574,411	+		GFF1542	0.30	-0.2
1,574,420	-		GFF1542	0.31	-1.1
1,574,438	-		GFF1542	0.33	-0.6
1,574,440	+		GFF1542	0.33	+0.3
1,574,440	-		GFF1542	0.33	-1.3
1,574,447	+		GFF1542	0.34	-0.4
1,574,455	-		GFF1542	0.35	-1.2
1,574,461	-		GFF1542	0.35	+0.9
1,574,474	-		GFF1542	0.37	-0.6
1,574,488	-		GFF1542	0.38	+1.3
1,574,506	+		GFF1542	0.40	-1.1
1,574,555	+		GFF1542	0.45	+0.6
1,574,555	+		GFF1542	0.45	-2.3
1,574,555	+		GFF1542	0.45	+0.3
1,574,555	+		GFF1542	0.45	-1.0
1,574,555	+		GFF1542	0.45	+0.8
1,574,562	-		GFF1542	0.45	-1.1
1,574,563	-		GFF1542	0.46	-0.8
1,574,563	-		GFF1542	0.46	+1.2
1,574,563	-		GFF1542	0.46	-0.6
1,574,563	-		GFF1542	0.46	+1.3
1,574,581	-		GFF1542	0.47	-0.3
1,574,581	-		GFF1542	0.47	-1.3
1,574,581	-		GFF1542	0.47	-1.3
1,574,604	+		GFF1542	0.50	-1.3
1,574,617	+		GFF1542	0.51	-0.4
1,574,642	+		GFF1542	0.53	-0.2
1,574,746	-		GFF1542	0.64	+0.0
1,574,787	-		GFF1542	0.68	-2.3
1,574,788	+		GFF1542	0.68	-0.1
1,574,821	-		GFF1542	0.71	-1.2
1,574,845	-		GFF1542	0.74	-1.7
1,574,847	+		GFF1542	0.74	+0.5
1,574,857	+		GFF1542	0.75	-0.3
1,574,865	-		GFF1542	0.76	+0.5
1,574,875	+		GFF1542	0.77	-0.9
1,574,875	+		GFF1542	0.77	+1.4
1,574,880	+		GFF1542	0.77	-1.4
1,574,883	-		GFF1542	0.77	-1.5
1,574,883	-		GFF1542	0.77	+0.6