Strain Fitness in Sphingobium sp. HT1-2 around GFF1469

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,496,629	+				+0.1
1,496,637	-				-1.4
1,496,650	+				+0.5
1,496,671	+				-0.4
1,496,671	+				-0.1
1,496,671	+				-2.2
1,496,671	+				-0.8
1,496,671	+				-1.2
1,496,672	+				+0.2
1,496,692	+				-0.1
1,496,749	+				-0.2
1,496,750	+				-0.9
1,496,783	+				-1.7
1,496,830	+				-2.3
1,496,885	-				-1.4
1,496,890	-		GFF1468	0.10	+0.7
1,496,906	+		GFF1468	0.13	-0.4
1,496,911	+		GFF1468	0.13	+0.2
1,496,914	-		GFF1468	0.14	+0.2
1,496,919	-		GFF1468	0.15	-1.4
1,496,919	-		GFF1468	0.15	-1.5
1,496,923	+		GFF1468	0.15	-1.5
1,496,947	+		GFF1468	0.19	-1.2
1,496,955	-		GFF1468	0.20	-0.9
1,496,955	-		GFF1468	0.20	-0.8
1,496,955	-		GFF1468	0.20	+1.3
1,496,957	-		GFF1468	0.20	+0.1
1,496,967	-		GFF1468	0.22	+0.5
1,496,985	+		GFF1468	0.24	+0.2
1,496,985	+		GFF1468	0.24	+0.5
1,496,985	+		GFF1468	0.24	-1.6
1,496,993	-		GFF1468	0.25	-1.2
1,496,993	-		GFF1468	0.25	-0.0
1,496,997	-		GFF1468	0.26	+1.4
1,497,010	-		GFF1468	0.28	-0.8
1,497,010	-		GFF1468	0.28	-1.9
1,497,028	-		GFF1468	0.30	-0.8
1,497,028	-		GFF1468	0.30	+0.3
1,497,082	-		GFF1468	0.38	+1.3
1,497,101	+		GFF1468	0.41	+0.1
1,497,109	-		GFF1468	0.42	+0.2
1,497,118	+		GFF1468	0.44	-0.8
1,497,132	-		GFF1468	0.46	-1.1
1,497,134	-		GFF1468	0.46	-0.1
1,497,144	-		GFF1468	0.47	-0.8
1,497,149	-		GFF1468	0.48	-0.4
1,497,155	+		GFF1468	0.49	-0.2
1,497,170	+		GFF1468	0.51	-1.6
1,497,170	+		GFF1468	0.51	-2.0
1,497,178	-		GFF1468	0.52	+2.1
1,497,201	-		GFF1468	0.56	+1.3
1,497,201	-		GFF1468	0.56	+0.4
1,497,203	+		GFF1468	0.56	-1.0
1,497,206	-		GFF1468	0.56	+0.2
1,497,208	+		GFF1468	0.57	-0.1
1,497,247	+		GFF1468	0.62	-0.7
1,497,258	+		GFF1468	0.64	-0.2
1,497,271	-		GFF1468	0.66	-0.2
1,497,349	+		GFF1468	0.77	-0.5
1,497,364	-		GFF1468	0.79	-0.9
1,497,364	-		GFF1468	0.79	+0.1
1,497,377	+		GFF1468	0.81	+0.3
1,497,387	+		GFF1468	0.83	-1.2
1,497,387	+		GFF1468	0.83	+0.3
1,497,392	+		GFF1468	0.83	-0.9
1,497,392	+		GFF1468	0.83	+0.2
1,497,395	-		GFF1468	0.84	+0.0
1,497,395	-		GFF1468	0.84	-1.6
1,497,400	-		GFF1468	0.85	-0.4
1,497,400	-		GFF1468	0.85	-1.4
1,497,415	+		GFF1468	0.87	-0.5
1,497,416	+		GFF1468	0.87	-0.6
1,497,416	+		GFF1468	0.87	-0.8
1,497,423	-		GFF1468	0.88	-0.3
1,497,424	-		GFF1468	0.88	-1.9
1,497,424	-		GFF1468	0.88	-1.2
1,497,424	-		GFF1468	0.88	-0.3
1,497,428	+		GFF1468	0.89	+1.5
1,497,428	+		GFF1468	0.89	-0.9
1,497,436	-		GFF1468	0.90	-0.5
1,497,436	-		GFF1468	0.90	-1.7
1,497,442	-				+1.0
1,497,442	-				-1.6
1,497,442	-				-0.8
1,497,445	-				+0.2
1,497,447	-				-2.3
1,497,468	-				+0.2
1,497,506	+				-0.8
1,497,506	+				+1.0
1,497,507	-				-1.0
1,497,508	-				+0.3
1,497,514	-				+1.1
1,497,514	-				-0.5
1,497,516	-				-0.4
1,497,533	-				+1.5
1,497,568	+				+0.2
1,497,611	-				-0.5
1,497,614	+				-1.9
1,497,638	+				+0.0
1,497,643	+				-0.8
1,497,643	+				-0.2
1,497,649	+				+1.2
1,497,668	+		GFF1469	0.12	-0.8
1,497,673	+		GFF1469	0.12	-1.3
1,497,683	+		GFF1469	0.14	-0.5
1,497,683	+		GFF1469	0.14	+0.1
1,497,683	+		GFF1469	0.14	-1.4
1,497,683	+		GFF1469	0.14	-0.4
1,497,690	+		GFF1469	0.15	-0.7
1,497,690	+		GFF1469	0.15	+1.6
1,497,691	-		GFF1469	0.15	+0.3
1,497,691	-		GFF1469	0.15	-0.9
1,497,691	-		GFF1469	0.15	-0.0
1,497,695	+		GFF1469	0.16	-0.5
1,497,698	-		GFF1469	0.17	+1.0
1,497,698	-		GFF1469	0.17	+2.2
1,497,702	-		GFF1469	0.17	-1.1
1,497,718	+		GFF1469	0.20	-0.1
1,497,718	+		GFF1469	0.20	-0.7
1,497,784	+		GFF1469	0.31	+0.4
1,497,808	+		GFF1469	0.34	-1.4
1,497,810	+		GFF1469	0.35	+0.1
1,497,810	+		GFF1469	0.35	-1.3
1,497,810	+		GFF1469	0.35	-0.5
1,497,810	+		GFF1469	0.35	-0.2
1,497,815	+		GFF1469	0.36	-1.8
1,497,816	-		GFF1469	0.36	+0.8
1,497,818	-		GFF1469	0.36	+1.0
1,497,818	-		GFF1469	0.36	-0.8
1,497,818	-		GFF1469	0.36	+0.6
1,497,818	-		GFF1469	0.36	-2.0
1,497,823	-		GFF1469	0.37	-0.3
1,497,823	-		GFF1469	0.37	-0.5
1,497,829	+		GFF1469	0.38	-0.4
1,497,837	-		GFF1469	0.39	+0.5
1,497,837	-		GFF1469	0.39	-0.8
1,497,839	+		GFF1469	0.40	-1.0
1,497,839	+		GFF1469	0.40	+0.1
1,497,839	+		GFF1469	0.40	-1.4
1,497,839	+		GFF1469	0.40	+1.4
1,497,839	+		GFF1469	0.40	+1.2
1,497,839	+		GFF1469	0.40	+1.0
1,497,839	+		GFF1469	0.40	-0.0
1,497,847	-		GFF1469	0.41	-0.5
1,497,847	-		GFF1469	0.41	-0.9
1,497,847	-		GFF1469	0.41	-1.3
1,497,887	-		GFF1469	0.47	+0.4
1,497,889	-		GFF1469	0.48	-1.2
1,497,898	+		GFF1469	0.49	-1.2
1,497,906	-		GFF1469	0.50	-0.0
1,497,907	-		GFF1469	0.51	-0.3
1,497,907	-		GFF1469	0.51	-0.0
1,497,907	-		GFF1469	0.51	-1.5
1,497,907	-		GFF1469	0.51	-0.4
1,497,907	-		GFF1469	0.51	-1.0
1,497,912	-		GFF1469	0.51	-1.2
1,497,934	+		GFF1469	0.55	+0.9
1,497,938	-		GFF1469	0.56	+0.7
1,497,981	-		GFF1469	0.63	-0.8
1,497,985	-		GFF1469	0.63	+0.2
1,497,985	-		GFF1469	0.63	-1.2
1,497,985	-		GFF1469	0.63	-1.3
1,497,990	-		GFF1469	0.64	+0.2
1,497,990	-		GFF1469	0.64	-0.9
1,497,995	+		GFF1469	0.65	-0.3
1,498,017	+		GFF1469	0.69	-0.4
1,498,017	+		GFF1469	0.69	-0.2
1,498,017	+		GFF1469	0.69	-0.2
1,498,017	+		GFF1469	0.69	-0.8
1,498,025	-		GFF1469	0.70	-0.7
1,498,025	-		GFF1469	0.70	-0.7
1,498,025	-		GFF1469	0.70	+0.3
1,498,053	+		GFF1469	0.75	-0.3
1,498,077	+		GFF1469	0.78	+1.0
1,498,077	+		GFF1469	0.78	+0.3
1,498,085	-		GFF1469	0.80	-0.3
1,498,085	-		GFF1469	0.80	-0.4
1,498,085	-		GFF1469	0.80	-1.4
1,498,085	-		GFF1469	0.80	+0.6
1,498,087	+		GFF1469	0.80	+0.6
1,498,092	+		GFF1469	0.81	-0.8
1,498,105	+		GFF1469	0.83	-1.1
1,498,112	+		GFF1469	0.84	+0.7
1,498,113	-		GFF1469	0.84	-0.1
1,498,117	+		GFF1469	0.85	+0.4
1,498,125	-		GFF1469	0.86	+0.8
1,498,183	+				+2.1
1,498,197	+				-1.1
1,498,211	+				-0.8
1,498,219	-				+0.3
1,498,219	-				-0.9
1,498,227	+				-0.7
1,498,229	-				+0.2
1,498,258	+				-1.2
1,498,258	+				-1.1
1,498,338	-				-0.3
1,498,354	-				-0.6
1,498,393	+				-1.3
1,498,408	+				-0.4
1,498,411	-				-1.8
1,498,411	-				-0.3
1,498,413	+				-1.3
1,498,413	+				-0.4
1,498,418	+				+0.4
1,498,418	+				-0.3
1,498,418	+				-1.2
1,498,418	+				-0.1
1,498,426	-				-1.5
1,498,426	-				-1.4
1,498,426	-				+0.2
1,498,426	-				+1.6
1,498,426	-				-1.3
1,498,426	-				-0.6
1,498,426	-				+0.9
1,498,426	-				-1.4
1,498,426	-				+0.2
1,498,426	-				-0.3
1,498,431	+				+0.8
1,498,439	-				-2.1
1,498,439	-				+0.5
1,498,462	+		GFF1470	0.13	-0.6
1,498,462	+		GFF1470	0.13	-0.7
1,498,470	-		GFF1470	0.14	+0.5
1,498,520	+		GFF1470	0.21	-0.6
1,498,533	-		GFF1470	0.23	+0.2
1,498,545	-		GFF1470	0.25	+0.8
1,498,569	+		GFF1470	0.28	-0.4
1,498,569	+		GFF1470	0.28	-1.2
1,498,572	-		GFF1470	0.28	-1.4
1,498,574	+		GFF1470	0.29	+0.3
1,498,582	+		GFF1470	0.30	-1.0
1,498,583	-		GFF1470	0.30	-0.2
1,498,584	-		GFF1470	0.30	+0.3
1,498,586	+		GFF1470	0.30	-0.7
1,498,590	+		GFF1470	0.31	-1.1
1,498,599	-		GFF1470	0.32	+1.3
1,498,626	+		GFF1470	0.36	+0.7
1,498,626	+		GFF1470	0.36	-0.3
1,498,626	+		GFF1470	0.36	+1.0
1,498,634	-		GFF1470	0.37	-1.2
1,498,660	-		GFF1470	0.41	-1.2
1,498,709	+		GFF1470	0.48	+0.4
1,498,718	+		GFF1470	0.49	-1.2
1,498,730	+		GFF1470	0.51	-2.2
1,498,733	+		GFF1470	0.51	+0.7
1,498,738	+		GFF1470	0.52	+1.8
1,498,738	+		GFF1470	0.52	-0.1
1,498,738	+		GFF1470	0.52	-0.4
1,498,738	+		GFF1470	0.52	-0.7
1,498,746	-		GFF1470	0.53	-1.8
1,498,746	-		GFF1470	0.53	-1.1
1,498,765	+		GFF1470	0.56	+0.1
1,498,811	-		GFF1470	0.62	+0.4
1,498,817	-		GFF1470	0.63	-0.4
1,498,818	-		GFF1470	0.63	-1.7
1,498,818	-		GFF1470	0.63	-2.2
1,498,827	-		GFF1470	0.64	-1.7
1,498,848	+		GFF1470	0.67	-0.8
1,498,848	+		GFF1470	0.67	-0.5
1,498,848	+		GFF1470	0.67	-0.3
1,498,853	+		GFF1470	0.68	+0.4
1,498,853	+		GFF1470	0.68	+0.1
1,498,855	-		GFF1470	0.68	-0.7
1,498,856	-		GFF1470	0.69	+0.1
1,498,856	-		GFF1470	0.69	-0.3
1,498,856	-		GFF1470	0.69	-1.3
1,498,856	-		GFF1470	0.69	+0.0
1,498,861	+		GFF1470	0.69	-0.2
1,498,861	-		GFF1470	0.69	+0.2
1,498,861	-		GFF1470	0.69	-1.1
1,498,861	-		GFF1470	0.69	+0.9
1,498,868	-		GFF1470	0.70	-1.1
1,498,869	-		GFF1470	0.70	+0.0
1,498,869	-		GFF1470	0.70	-0.3
1,498,876	-		GFF1470	0.71	-1.1
1,498,895	+		GFF1470	0.74	-1.8
1,498,895	+		GFF1470	0.74	-0.2
1,498,895	+		GFF1470	0.74	-2.4
1,498,895	+		GFF1470	0.74	-0.2
1,498,895	+		GFF1470	0.74	-1.3
1,498,895	+		GFF1470	0.74	+1.3
1,498,895	+		GFF1470	0.74	-1.5
1,498,895	+		GFF1470	0.74	-0.3
1,498,895	+		GFF1470	0.74	-1.8
1,498,895	+		GFF1470	0.74	-1.0
1,498,895	+		GFF1470	0.74	+1.1
1,498,895	+		GFF1470	0.74	+0.2
1,498,897	+		GFF1470	0.74	-0.4
1,498,901	+		GFF1470	0.75	-0.1
1,498,903	-		GFF1470	0.75	-0.8
1,498,903	-		GFF1470	0.75	-2.1
1,498,903	-		GFF1470	0.75	+0.2
1,498,903	-		GFF1470	0.75	-0.7
1,498,903	-		GFF1470	0.75	-1.3
1,498,903	-		GFF1470	0.75	-0.6
1,498,903	-		GFF1470	0.75	-0.0
1,498,903	-		GFF1470	0.75	-0.4
1,498,903	-		GFF1470	0.75	+0.8
1,498,903	-		GFF1470	0.75	-0.8
1,498,903	-		GFF1470	0.75	+1.3
1,498,903	-		GFF1470	0.75	-0.5
1,498,903	-		GFF1470	0.75	+0.2
1,498,903	-		GFF1470	0.75	-0.1
1,498,903	-		GFF1470	0.75	-0.9
1,498,903	-		GFF1470	0.75	+1.4
1,498,904	+		GFF1470	0.75	-0.3
1,498,919	+		GFF1470	0.77	-0.9
1,498,925	+		GFF1470	0.78	+0.5
1,498,925	+		GFF1470	0.78	+1.2
1,498,927	-		GFF1470	0.79	-0.5
1,498,927	-		GFF1470	0.79	-0.4
1,498,927	-		GFF1470	0.79	-0.5
1,498,930	+		GFF1470	0.79	+0.7
1,498,933	+		GFF1470	0.79	+0.4
1,498,933	-		GFF1470	0.79	-0.3
1,498,933	-		GFF1470	0.79	-0.2
1,498,938	-		GFF1470	0.80	-0.6
1,498,938	-		GFF1470	0.80	-2.6
1,498,938	-		GFF1470	0.80	-1.8
1,498,943	-		GFF1470	0.81	+0.4
1,498,945	+		GFF1470	0.81	+0.6
1,498,947	+		GFF1470	0.81	+0.2
1,498,948	-		GFF1470	0.81	+1.8
1,498,955	-		GFF1470	0.82	-0.5
1,498,956	-		GFF1470	0.83	-0.0
1,498,972	-		GFF1470	0.85	-2.1
1,498,985	+		GFF1470	0.87	+1.2
1,498,990	+		GFF1470	0.87	+0.0
1,498,993	+		GFF1470	0.88	+0.7
1,499,000	+		GFF1470	0.89	+0.3
1,499,000	+		GFF1470	0.89	-0.7
1,499,000	+		GFF1470	0.89	-1.9
1,499,000	-		GFF1470	0.89	+0.0
1,499,000	-		GFF1470	0.89	+0.4
1,499,017	-				-0.0
1,499,022	-				-1.0
1,499,036	+				-0.8
1,499,036	+				+1.4
1,499,036	+				+1.2
1,499,044	-				-0.5
1,499,044	-				-0.9
1,499,046	+				+0.1
1,499,074	-				-1.6
1,499,086	-				+0.1
1,499,103	+				-0.5
1,499,108	+				-0.0
1,499,113	-				-1.2
1,499,123	+				-1.0