Strain Fitness in Sphingobium sp. HT1-2 around GFF1434

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,462,749	-		GFF1433	0.13	+0.0
1,462,749	-		GFF1433	0.13	+0.2
1,462,749	-		GFF1433	0.13	+1.0
1,462,756	+		GFF1433	0.14	-0.8
1,462,756	+		GFF1433	0.14	+0.4
1,462,764	-		GFF1433	0.14	-0.4
1,462,764	-		GFF1433	0.14	-1.1
1,462,764	-		GFF1433	0.14	-0.1
1,462,775	+		GFF1433	0.15	-1.2
1,462,780	+		GFF1433	0.16	+0.9
1,462,802	+		GFF1433	0.18	+0.9
1,462,805	-		GFF1433	0.18	-0.5
1,462,805	-		GFF1433	0.18	+0.9
1,462,815	-		GFF1433	0.19	+0.2
1,462,853	+		GFF1433	0.23	+0.2
1,462,862	+		GFF1433	0.24	+0.3
1,462,868	+		GFF1433	0.25	+0.1
1,462,920	+		GFF1433	0.30	+1.3
1,462,936	+		GFF1433	0.31	-1.4
1,462,936	+		GFF1433	0.31	-0.1
1,462,944	-		GFF1433	0.32	-1.2
1,462,957	+		GFF1433	0.33	+0.4
1,462,962	+		GFF1433	0.34	+0.2
1,462,979	+		GFF1433	0.35	-0.1
1,462,987	-		GFF1433	0.36	-0.3
1,463,018	+		GFF1433	0.39	-1.1
1,463,023	-		GFF1433	0.40	-0.2
1,463,026	-		GFF1433	0.40	-0.3
1,463,045	-		GFF1433	0.42	+0.3
1,463,115	-		GFF1433	0.49	-0.4
1,463,147	+		GFF1433	0.52	+0.6
1,463,149	+		GFF1433	0.52	-1.8
1,463,164	-		GFF1433	0.54	-0.7
1,463,164	-		GFF1433	0.54	+1.0
1,463,198	+		GFF1433	0.57	+0.8
1,463,233	+		GFF1433	0.60	+0.3
1,463,252	+		GFF1433	0.62	-0.8
1,463,335	+		GFF1433	0.71	-0.8
1,463,335	+		GFF1433	0.71	+0.3
1,463,335	+		GFF1433	0.71	+0.7
1,463,335	+		GFF1433	0.71	+0.1
1,463,335	+		GFF1433	0.71	-2.0
1,463,337	-		GFF1433	0.71	-1.5
1,463,343	-		GFF1433	0.71	+0.5
1,463,343	-		GFF1433	0.71	-0.4
1,463,344	-		GFF1433	0.71	-0.4
1,463,388	+		GFF1433	0.76	-0.6
1,463,395	+		GFF1433	0.76	-1.4
1,463,403	-		GFF1433	0.77	+1.7
1,463,457	-		GFF1433	0.82	-1.6
1,463,482	-		GFF1433	0.85	+0.3
1,463,482	-		GFF1433	0.85	-0.1
1,463,484	+		GFF1433	0.85	-1.9
1,463,484	+		GFF1433	0.85	-0.5
1,463,492	-		GFF1433	0.86	+0.3
1,463,492	-		GFF1433	0.86	-0.5
1,463,492	-		GFF1433	0.86	-0.4
1,463,611	+				+1.2
1,463,619	-				-0.5
1,463,648	-				-0.3
1,463,665	-				-0.3
1,463,667	+				+0.5
1,463,672	+				-0.5
1,463,677	+				-0.8
1,463,685	-				+0.7
1,463,687	+				+0.7
1,463,687	-				-0.2
1,463,692	+				+1.2
1,463,692	+				-0.8
1,463,692	+				-0.7
1,463,695	-				+0.3
1,463,700	-				-1.2
1,463,705	-				-0.4
1,463,717	-				+0.1
1,463,725	+				-0.2
1,463,725	+				+0.1
1,463,725	+				+0.7
1,463,725	+				-1.9
1,463,725	+				-1.4
1,463,725	+				+0.6
1,463,725	+				-1.2
1,463,725	+				-1.5
1,463,725	+				-0.3
1,463,733	-				-0.8
1,463,733	-				+0.2
1,463,733	-				-0.3
1,463,733	-				+0.5
1,463,733	-				-0.5
1,463,733	-				-1.1
1,463,733	-				-1.6
1,463,771	-				+0.3
1,463,771	-				-1.2
1,463,775	-		GFF1434	0.10	-1.2
1,463,782	+		GFF1434	0.11	-1.2
1,463,806	+		GFF1434	0.14	-1.3
1,463,811	+		GFF1434	0.14	-1.0
1,463,819	+		GFF1434	0.15	-0.1
1,463,833	+		GFF1434	0.17	-0.5
1,463,858	-		GFF1434	0.20	+0.7
1,463,858	-		GFF1434	0.20	-1.5
1,463,884	-		GFF1434	0.23	-0.3
1,463,886	+		GFF1434	0.23	-1.5
1,463,886	+		GFF1434	0.23	-0.5
1,463,886	+		GFF1434	0.23	-1.3
1,463,886	+		GFF1434	0.23	-0.7
1,463,894	-		GFF1434	0.24	+1.4
1,463,894	-		GFF1434	0.24	-0.5
1,463,894	-		GFF1434	0.24	+0.5
1,463,894	-		GFF1434	0.24	-0.4
1,463,894	-		GFF1434	0.24	-0.8
1,463,894	-		GFF1434	0.24	-0.7
1,463,894	-		GFF1434	0.24	-0.1
1,463,894	-		GFF1434	0.24	-1.2
1,463,914	+		GFF1434	0.26	-0.5
1,463,922	-		GFF1434	0.27	+0.1
1,463,922	-		GFF1434	0.27	+1.0
1,463,935	+		GFF1434	0.29	+0.7
1,463,943	-		GFF1434	0.29	-1.1
1,463,943	-		GFF1434	0.29	-0.1
1,463,974	+		GFF1434	0.33	+0.6
1,463,984	+		GFF1434	0.34	-2.4
1,463,984	+		GFF1434	0.34	-0.4
1,463,986	+		GFF1434	0.34	-0.9
1,463,986	+		GFF1434	0.34	-1.2
1,463,986	+		GFF1434	0.34	+1.1
1,463,992	-		GFF1434	0.35	-0.4
1,463,994	-		GFF1434	0.35	-1.2
1,463,994	-		GFF1434	0.35	-1.0
1,464,009	-		GFF1434	0.37	+0.2
1,464,047	+		GFF1434	0.41	+0.4
1,464,065	+		GFF1434	0.43	-1.2
1,464,065	+		GFF1434	0.43	-0.8
1,464,065	+		GFF1434	0.43	+1.0
1,464,065	+		GFF1434	0.43	-0.4
1,464,065	+		GFF1434	0.43	-2.5
1,464,073	-		GFF1434	0.44	-0.0
1,464,073	-		GFF1434	0.44	-1.6
1,464,093	+		GFF1434	0.47	+0.1
1,464,106	+		GFF1434	0.48	-0.1
1,464,117	+		GFF1434	0.49	-0.7
1,464,125	-		GFF1434	0.50	+1.5
1,464,147	-		GFF1434	0.53	+0.1
1,464,169	-		GFF1434	0.55	-0.5
1,464,205	-		GFF1434	0.60	-0.8
1,464,206	-		GFF1434	0.60	-0.6
1,464,216	+		GFF1434	0.61	+0.2
1,464,224	-		GFF1434	0.62	-0.8
1,464,226	-		GFF1434	0.62	-0.6
1,464,264	+		GFF1434	0.66	+0.5
1,464,274	-		GFF1434	0.67	+0.7
1,464,293	+		GFF1434	0.70	+0.1
1,464,294	+		GFF1434	0.70	-0.8
1,464,313	+		GFF1434	0.72	+2.4
1,464,321	+		GFF1434	0.73	+0.2
1,464,321	+		GFF1434	0.73	-2.0
1,464,321	+		GFF1434	0.73	-0.0
1,464,326	+		GFF1434	0.73	+0.6
1,464,329	-		GFF1434	0.74	-0.3
1,464,372	+		GFF1434	0.79	+0.8
1,464,419	+		GFF1434	0.84	+1.1
1,464,425	-		GFF1434	0.85	+0.5
1,464,479	+				-1.0
1,464,479	+				-1.1
1,464,479	+				-0.2
1,464,479	+				+0.4
1,464,479	+				+0.0
1,464,484	+				-0.4
1,464,487	-				-1.2
1,464,487	-				+0.4
1,464,487	-				-1.7
1,464,540	+				-0.7
1,464,542	+				+0.2
1,464,550	-				+0.7
1,464,550	-				+0.3
1,464,569	+				-0.5
1,464,593	-				+0.0
1,464,595	+				-1.2
1,464,595	+				-1.4
1,464,603	-				-1.0
1,464,603	-				+0.5
1,464,607	+				-0.8
1,464,615	-				-0.1
1,464,616	+				-1.0
1,464,634	+				-1.5
1,464,649	+				-0.4
1,464,678	+		GFF1435	0.22	-1.1
1,464,690	-		GFF1435	0.29	-2.0
1,464,697	-		GFF1435	0.34	+0.8
1,464,751	+		GFF1435	0.69	-0.3
1,464,751	+		GFF1435	0.69	-0.3
1,464,751	+		GFF1435	0.69	-0.1
1,464,751	+		GFF1435	0.69	-0.3
1,464,755	+		GFF1435	0.72	+0.4
1,464,759	-		GFF1435	0.75	+1.6
1,464,759	-		GFF1435	0.75	-0.1
1,464,759	-		GFF1435	0.75	-0.8
1,464,759	-		GFF1435	0.75	-1.5
1,464,759	-		GFF1435	0.75	-1.1
1,464,785	+				-1.7
1,464,788	-				-0.4
1,464,793	-				-2.5
1,464,798	+				-0.7
1,464,807	-				-0.4
1,464,821	+				+0.9
1,464,840	+				+0.3
1,464,842	+				-0.9
1,464,842	+				+0.2
1,464,842	+				+1.3
1,464,848	-				-1.0
1,464,850	-				-1.6
1,464,850	-				-1.1
1,464,857	-				-0.7
1,464,865	-				-0.8
1,464,872	+				-2.0
1,464,948	+				-0.5
1,464,970	-				-0.4
1,464,977	+				-0.8
1,464,985	-				-0.6
1,464,985	-				-1.6
1,464,985	-				-0.3
1,464,985	-				-0.7
1,465,017	+				+0.4
1,465,017	+				-1.1
1,465,017	-				-2.6
1,465,030	-				+0.2
1,465,030	-				-0.2
1,465,030	-				-0.8
1,465,033	+				-1.6
1,465,049	-				-0.6
1,465,051	-				-1.4
1,465,051	-				-1.2
1,465,087	+				-1.5
1,465,088	-				+1.2
1,465,095	-				+1.0
1,465,105	+		GFF1436	0.10	-0.4
1,465,118	+		GFF1436	0.12	+1.3
1,465,163	+		GFF1436	0.17	-1.0
1,465,171	-		GFF1436	0.18	+1.0
1,465,182	-		GFF1436	0.19	-1.1
1,465,182	-		GFF1436	0.19	+0.5
1,465,189	-		GFF1436	0.20	-0.0
1,465,233	-		GFF1436	0.26	+0.3
1,465,238	-		GFF1436	0.26	-0.8
1,465,249	+		GFF1436	0.27	+0.5
1,465,255	+		GFF1436	0.28	-0.4
1,465,282	-		GFF1436	0.31	+0.2
1,465,297	+		GFF1436	0.33	-0.2
1,465,301	-		GFF1436	0.34	-0.5
1,465,316	-		GFF1436	0.35	+0.0
1,465,346	+		GFF1436	0.39	-0.9
1,465,346	+		GFF1436	0.39	-0.5
1,465,346	+		GFF1436	0.39	-1.5
1,465,346	+		GFF1436	0.39	+1.3
1,465,354	-		GFF1436	0.40	+0.2
1,465,371	+		GFF1436	0.42	-0.1
1,465,371	+		GFF1436	0.42	-0.5
1,465,371	+		GFF1436	0.42	-0.7
1,465,371	+		GFF1436	0.42	+0.5
1,465,371	+		GFF1436	0.42	-1.4
1,465,371	+		GFF1436	0.42	-0.9
1,465,371	+		GFF1436	0.42	+0.2
1,465,375	+		GFF1436	0.43	-0.3
1,465,375	+		GFF1436	0.43	+0.6
1,465,376	+		GFF1436	0.43	+0.7
1,465,376	+		GFF1436	0.43	-1.4
1,465,376	+		GFF1436	0.43	-0.6
1,465,379	-		GFF1436	0.43	+0.5
1,465,379	-		GFF1436	0.43	+0.2
1,465,379	-		GFF1436	0.43	+0.8
1,465,379	-		GFF1436	0.43	-1.5
1,465,379	-		GFF1436	0.43	-1.4
1,465,379	-		GFF1436	0.43	-0.1
1,465,379	-		GFF1436	0.43	+0.1
1,465,379	-		GFF1436	0.43	-1.5
1,465,379	-		GFF1436	0.43	-0.4
1,465,379	-		GFF1436	0.43	+0.4
1,465,384	-		GFF1436	0.44	-0.2
1,465,389	-		GFF1436	0.44	-0.9
1,465,389	-		GFF1436	0.44	-0.2
1,465,389	-		GFF1436	0.44	-0.8
1,465,404	-		GFF1436	0.46	-1.4
1,465,407	+		GFF1436	0.46	-1.1
1,465,464	-		GFF1436	0.53	-1.0
1,465,489	+		GFF1436	0.56	-0.0
1,465,489	+		GFF1436	0.56	-0.5
1,465,496	-		GFF1436	0.57	+0.3
1,465,496	-		GFF1436	0.57	-1.5
1,465,510	+		GFF1436	0.59	-0.2
1,465,513	-		GFF1436	0.59	+0.5
1,465,515	+		GFF1436	0.59	-2.0
1,465,518	+		GFF1436	0.60	+1.6
1,465,518	-		GFF1436	0.60	-0.8
1,465,518	-		GFF1436	0.60	-0.1
1,465,523	-		GFF1436	0.60	-1.8