Strain Fitness in Sphingobium sp. HT1-2 around GFF1392

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,415,931	+		GFF1391	0.28	+0.7
1,415,963	+		GFF1391	0.31	-1.4
1,416,000	-		GFF1391	0.33	-0.2
1,416,001	-		GFF1391	0.33	-0.3
1,416,006	-		GFF1391	0.34	-0.2
1,416,018	+		GFF1391	0.35	+1.1
1,416,034	+		GFF1391	0.36	-0.2
1,416,035	+		GFF1391	0.36	-0.3
1,416,043	-		GFF1391	0.37	-1.4
1,416,043	-		GFF1391	0.37	-0.8
1,416,087	+		GFF1391	0.40	+0.3
1,416,104	+		GFF1391	0.41	-2.2
1,416,109	+		GFF1391	0.41	+1.4
1,416,109	+		GFF1391	0.41	+1.2
1,416,109	+		GFF1391	0.41	+1.0
1,416,109	+		GFF1391	0.41	-0.9
1,416,112	-		GFF1391	0.42	-1.5
1,416,112	-		GFF1391	0.42	-0.0
1,416,116	-		GFF1391	0.42	+0.0
1,416,117	-		GFF1391	0.42	+0.2
1,416,117	-		GFF1391	0.42	-1.7
1,416,117	-		GFF1391	0.42	-0.1
1,416,117	-		GFF1391	0.42	-0.5
1,416,117	-		GFF1391	0.42	-0.0
1,416,122	-		GFF1391	0.42	-1.0
1,416,172	+		GFF1391	0.46	-0.6
1,416,172	+		GFF1391	0.46	+0.2
1,416,172	+		GFF1391	0.46	-0.1
1,416,172	+		GFF1391	0.46	-0.8
1,416,179	-		GFF1391	0.47	-1.3
1,416,179	-		GFF1391	0.47	-0.1
1,416,180	-		GFF1391	0.47	+0.0
1,416,180	-		GFF1391	0.47	-1.5
1,416,180	-		GFF1391	0.47	-0.1
1,416,180	-		GFF1391	0.47	+1.1
1,416,182	+		GFF1391	0.47	-1.6
1,416,215	-		GFF1391	0.49	-1.4
1,416,215	-		GFF1391	0.49	+0.5
1,416,264	+		GFF1391	0.53	-0.6
1,416,264	+		GFF1391	0.53	-1.1
1,416,274	-		GFF1391	0.54	-1.6
1,416,291	+		GFF1391	0.55	+0.1
1,416,291	+		GFF1391	0.55	+0.9
1,416,299	+		GFF1391	0.56	+1.2
1,416,299	-		GFF1391	0.56	-1.8
1,416,305	+		GFF1391	0.56	-0.7
1,416,305	+		GFF1391	0.56	+1.2
1,416,305	+		GFF1391	0.56	+0.7
1,416,307	-		GFF1391	0.56	-0.3
1,416,307	-		GFF1391	0.56	+0.2
1,416,307	-		GFF1391	0.56	-0.2
1,416,310	+		GFF1391	0.56	-0.5
1,416,313	-		GFF1391	0.57	-1.5
1,416,343	-		GFF1391	0.59	-1.7
1,416,355	-		GFF1391	0.60	-0.6
1,416,379	+		GFF1391	0.61	+0.3
1,416,379	+		GFF1391	0.61	-0.2
1,416,387	-		GFF1391	0.62	+0.2
1,416,394	+		GFF1391	0.63	+0.3
1,416,402	-		GFF1391	0.63	-0.3
1,416,405	+		GFF1391	0.63	-1.3
1,416,405	+		GFF1391	0.63	-1.3
1,416,413	-		GFF1391	0.64	-0.7
1,416,438	-		GFF1391	0.66	-0.2
1,416,449	-		GFF1391	0.67	-0.4
1,416,462	+		GFF1391	0.68	+1.5
1,416,481	-		GFF1391	0.69	+0.4
1,416,481	-		GFF1391	0.69	-0.5
1,416,519	-		GFF1391	0.72	-1.7
1,416,536	+		GFF1391	0.73	-1.4
1,416,544	-		GFF1391	0.74	-0.7
1,416,558	+		GFF1391	0.75	-1.8
1,416,558	+		GFF1391	0.75	+0.1
1,416,559	+		GFF1391	0.75	+0.4
1,416,559	+		GFF1391	0.75	+0.6
1,416,566	-		GFF1391	0.75	+0.4
1,416,567	-		GFF1391	0.75	-0.3
1,416,571	-		GFF1391	0.76	+0.4
1,416,574	+		GFF1391	0.76	-0.5
1,416,574	+		GFF1391	0.76	-0.4
1,416,574	+		GFF1391	0.76	-1.4
1,416,576	+		GFF1391	0.76	-0.2
1,416,584	+		GFF1391	0.77	-0.0
1,416,584	+		GFF1391	0.77	-0.4
1,416,592	+		GFF1391	0.77	-0.3
1,416,592	-		GFF1391	0.77	+0.7
1,416,594	+		GFF1391	0.77	+0.0
1,416,594	+		GFF1391	0.77	-1.2
1,416,594	+		GFF1391	0.77	-0.5
1,416,594	+		GFF1391	0.77	-0.3
1,416,594	+		GFF1391	0.77	-1.5
1,416,594	+		GFF1391	0.77	-0.9
1,416,594	+		GFF1391	0.77	+0.1
1,416,594	+		GFF1391	0.77	-0.7
1,416,594	+		GFF1391	0.77	-0.5
1,416,594	+		GFF1391	0.77	+0.5
1,416,594	+		GFF1391	0.77	-0.2
1,416,594	+		GFF1391	0.77	-0.2
1,416,594	+		GFF1391	0.77	-1.3
1,416,596	+		GFF1391	0.78	-0.1
1,416,600	-		GFF1391	0.78	+0.2
1,416,601	+		GFF1391	0.78	-0.2
1,416,601	+		GFF1391	0.78	-0.5
1,416,602	-		GFF1391	0.78	+0.2
1,416,602	-		GFF1391	0.78	+1.6
1,416,602	-		GFF1391	0.78	+0.2
1,416,602	-		GFF1391	0.78	+1.3
1,416,602	-		GFF1391	0.78	-0.6
1,416,602	-		GFF1391	0.78	-1.4
1,416,602	-		GFF1391	0.78	-1.8
1,416,602	-		GFF1391	0.78	-0.0
1,416,602	-		GFF1391	0.78	+0.1
1,416,602	-		GFF1391	0.78	+0.5
1,416,602	-		GFF1391	0.78	-2.7
1,416,616	+		GFF1391	0.79	-0.3
1,416,616	+		GFF1391	0.79	-0.4
1,416,624	-		GFF1391	0.80	+1.2
1,416,632	-		GFF1391	0.80	-0.9
1,416,645	-		GFF1391	0.81	-0.5
1,416,677	+		GFF1391	0.84	-0.4
1,416,685	-		GFF1391	0.84	-0.3
1,416,700	+		GFF1391	0.85	+0.7
1,416,701	+		GFF1391	0.85	-0.6
1,416,743	+		GFF1391	0.88	-2.0
1,416,743	+		GFF1391	0.88	+0.4
1,416,749	-		GFF1391	0.89	+1.5
1,416,751	-		GFF1391	0.89	-0.7
1,416,753	-		GFF1391	0.89	+1.3
1,416,759	+		GFF1391	0.90	-1.0
1,416,774	+				-0.0
1,416,780	+				-2.9
1,416,792	+				-1.9
1,416,792	+				+0.5
1,416,792	+				+0.0
1,416,792	+				+0.1
1,416,820	+				+0.3
1,416,835	-				-0.0
1,416,838	+				-1.6
1,416,838	+				-0.6
1,416,838	+				-1.1
1,416,838	+				-0.4
1,416,838	+				-0.3
1,416,838	+				+1.4
1,416,838	+				-0.4
1,416,838	+				+0.3
1,416,838	+				+0.7
1,416,841	-				+0.5
1,416,841	-				+1.2
1,416,843	+				+0.3
1,416,843	+				+0.9
1,416,846	-				-1.7
1,416,846	-				-0.6
1,416,846	-				+0.3
1,416,846	-				-2.4
1,416,846	-				-2.1
1,416,846	-				-0.6
1,416,846	-				-0.8
1,416,846	-				+1.1
1,416,846	-				-1.2
1,416,846	-				-0.4
1,416,846	-				+0.1
1,416,846	-				-0.9
1,416,846	-				+0.1
1,416,848	+				+0.1
1,416,851	-				-0.6
1,416,851	-				-0.3
1,416,851	-				+0.4
1,416,851	-				-0.0
1,416,853	+				+0.5
1,416,856	-				-0.4
1,416,858	+				-1.2
1,416,860	-				-2.4
1,416,900	-				-0.0
1,416,903	+				-0.1
1,416,916	-				-1.5
1,416,927	-				-0.2
1,416,928	-				+1.2
1,416,928	-				-1.1
1,416,934	+				-1.4
1,416,965	+				+0.6
1,416,978	+				-0.4
1,416,978	-				-0.5
1,417,001	-				-0.2
1,417,004	-				-0.9
1,417,005	+				-0.7
1,417,005	+				-1.6
1,417,005	-				+0.2
1,417,013	-				-2.0
1,417,013	-				-0.2
1,417,018	-				-0.5
1,417,031	+				-1.1
1,417,034	-				-0.3
1,417,036	+				-0.5
1,417,036	+				+0.1
1,417,044	-				+0.2
1,417,044	-				+0.7
1,417,044	-				-1.3
1,417,044	-				-0.4
1,417,044	-				+0.2
1,417,044	-				-1.4
1,417,044	-				-0.6
1,417,044	-				-1.0
1,417,044	-				-1.2
1,417,044	-				-1.5
1,417,071	+		GFF1392	0.11	+0.4
1,417,071	+		GFF1392	0.11	-1.3
1,417,076	+		GFF1392	0.11	+0.8
1,417,107	-		GFF1392	0.13	-1.2
1,417,111	+		GFF1392	0.13	-1.6
1,417,113	+		GFF1392	0.13	-1.8
1,417,119	-		GFF1392	0.14	-0.5
1,417,119	-		GFF1392	0.14	-0.3
1,417,144	+		GFF1392	0.15	-0.7
1,417,144	+		GFF1392	0.15	-1.4
1,417,144	+		GFF1392	0.15	-1.7
1,417,144	+		GFF1392	0.15	+0.1
1,417,144	+		GFF1392	0.15	-1.2
1,417,152	-		GFF1392	0.16	+1.4
1,417,152	-		GFF1392	0.16	-0.5
1,417,160	+		GFF1392	0.16	-0.7
1,417,160	+		GFF1392	0.16	-0.7
1,417,168	-		GFF1392	0.17	-0.3
1,417,168	-		GFF1392	0.17	+0.4
1,417,168	-		GFF1392	0.17	-0.6
1,417,170	+		GFF1392	0.17	-1.7
1,417,170	+		GFF1392	0.17	+0.0
1,417,170	+		GFF1392	0.17	-0.0
1,417,178	-		GFF1392	0.18	-0.9
1,417,178	-		GFF1392	0.18	+1.0
1,417,179	+		GFF1392	0.18	+0.4
1,417,187	-		GFF1392	0.18	-1.6
1,417,203	+		GFF1392	0.19	-1.1
1,417,203	+		GFF1392	0.19	-0.1
1,417,222	+		GFF1392	0.20	-1.1
1,417,233	+		GFF1392	0.21	-0.4
1,417,265	-		GFF1392	0.23	+0.4
1,417,280	+		GFF1392	0.24	-0.0
1,417,288	-		GFF1392	0.25	-0.3
1,417,288	-		GFF1392	0.25	-1.1
1,417,299	+		GFF1392	0.25	-1.0
1,417,299	+		GFF1392	0.25	-0.6
1,417,307	+		GFF1392	0.26	-2.0
1,417,307	-		GFF1392	0.26	-1.2
1,417,307	-		GFF1392	0.26	+0.4
1,417,307	-		GFF1392	0.26	-1.8
1,417,307	-		GFF1392	0.26	+0.4
1,417,307	-		GFF1392	0.26	-0.9
1,417,307	-		GFF1392	0.26	+1.0
1,417,317	-		GFF1392	0.27	-0.6
1,417,325	-		GFF1392	0.27	-0.5
1,417,346	+		GFF1392	0.28	-0.2
1,417,352	+		GFF1392	0.29	-0.2
1,417,352	-		GFF1392	0.29	-0.7
1,417,355	-		GFF1392	0.29	+0.2
1,417,360	-		GFF1392	0.29	-0.1
1,417,365	-		GFF1392	0.30	+0.8
1,417,373	-		GFF1392	0.30	-1.0
1,417,379	+		GFF1392	0.31	+1.6
1,417,379	+		GFF1392	0.31	-2.1
1,417,387	-		GFF1392	0.31	+0.6
1,417,387	-		GFF1392	0.31	+0.1
1,417,387	-		GFF1392	0.31	-0.7
1,417,387	-		GFF1392	0.31	-0.3
1,417,387	-		GFF1392	0.31	+0.5
1,417,387	-		GFF1392	0.31	+0.5
1,417,387	-		GFF1392	0.31	+0.6
1,417,388	-		GFF1392	0.31	-0.3
1,417,405	+		GFF1392	0.32	-0.2
1,417,406	+		GFF1392	0.32	-1.4
1,417,406	+		GFF1392	0.32	+0.8
1,417,406	+		GFF1392	0.32	-1.2
1,417,413	-		GFF1392	0.33	+0.1
1,417,414	-		GFF1392	0.33	-0.1
1,417,416	+		GFF1392	0.33	+1.1
1,417,420	-		GFF1392	0.33	+0.3
1,417,436	-		GFF1392	0.34	-0.0
1,417,447	+		GFF1392	0.35	+0.1
1,417,447	+		GFF1392	0.35	+1.0
1,417,447	+		GFF1392	0.35	-1.1
1,417,455	+		GFF1392	0.36	+0.4
1,417,455	+		GFF1392	0.36	+0.9
1,417,455	-		GFF1392	0.36	-1.0
1,417,463	-		GFF1392	0.36	-0.2
1,417,463	-		GFF1392	0.36	-0.4
1,417,463	-		GFF1392	0.36	+0.7
1,417,463	-		GFF1392	0.36	-1.1
1,417,466	+		GFF1392	0.36	-1.2
1,417,466	+		GFF1392	0.36	-0.2
1,417,476	-		GFF1392	0.37	-0.6
1,417,484	-		GFF1392	0.37	+1.8
1,417,518	-		GFF1392	0.40	+0.6
1,417,521	+		GFF1392	0.40	-0.8
1,417,521	+		GFF1392	0.40	-0.6
1,417,523	+		GFF1392	0.40	-0.9
1,417,523	+		GFF1392	0.40	-1.9
1,417,523	+		GFF1392	0.40	-0.1
1,417,523	+		GFF1392	0.40	-1.8
1,417,523	+		GFF1392	0.40	-0.5
1,417,523	+		GFF1392	0.40	+2.0
1,417,523	+		GFF1392	0.40	-0.1
1,417,523	+		GFF1392	0.40	+0.2
1,417,528	+		GFF1392	0.40	-0.4
1,417,531	-		GFF1392	0.40	+0.5
1,417,531	-		GFF1392	0.40	-1.2
1,417,531	-		GFF1392	0.40	-0.2
1,417,531	-		GFF1392	0.40	-0.8
1,417,536	-		GFF1392	0.41	-1.0
1,417,536	-		GFF1392	0.41	-0.8
1,417,557	-		GFF1392	0.42	-0.7
1,417,565	-		GFF1392	0.43	-1.2
1,417,566	+		GFF1392	0.43	-0.3
1,417,575	-		GFF1392	0.43	-0.6
1,417,575	-		GFF1392	0.43	-0.1
1,417,577	+		GFF1392	0.43	+0.3
1,417,577	+		GFF1392	0.43	+1.6
1,417,661	-		GFF1392	0.49	-1.0
1,417,675	+		GFF1392	0.50	-2.1
1,417,675	+		GFF1392	0.50	-0.3
1,417,675	+		GFF1392	0.50	-2.5
1,417,685	+		GFF1392	0.51	-0.6
1,417,685	+		GFF1392	0.51	+0.1
1,417,685	+		GFF1392	0.51	-0.5
1,417,693	-		GFF1392	0.51	+0.3
1,417,693	-		GFF1392	0.51	-2.1
1,417,693	-		GFF1392	0.51	+0.5
1,417,693	-		GFF1392	0.51	-0.6
1,417,693	-		GFF1392	0.51	-1.2
1,417,705	+		GFF1392	0.52	+0.1
1,417,710	-		GFF1392	0.52	+0.7
1,417,725	-		GFF1392	0.53	-0.5
1,417,730	-		GFF1392	0.53	+0.3
1,417,730	-		GFF1392	0.53	-0.4
1,417,739	+		GFF1392	0.54	-1.2
1,417,753	+		GFF1392	0.55	+0.3
1,417,762	-		GFF1392	0.56	-0.7
1,417,770	-		GFF1392	0.56	-0.5
1,417,770	-		GFF1392	0.56	+0.7
1,417,786	+		GFF1392	0.57	-1.6
1,417,791	+		GFF1392	0.57	-1.2
1,417,792	+		GFF1392	0.57	-0.0
1,417,794	-		GFF1392	0.58	-0.8
1,417,802	+		GFF1392	0.58	-0.0
1,417,803	+		GFF1392	0.58	-0.6
1,417,816	+		GFF1392	0.59	+0.4
1,417,816	-		GFF1392	0.59	+0.3
1,417,819	+		GFF1392	0.59	-0.5
1,417,820	+		GFF1392	0.59	-0.9
1,417,825	+		GFF1392	0.60	+0.9
1,417,827	-		GFF1392	0.60	-1.0
1,417,838	-		GFF1392	0.60	-0.9
1,417,838	-		GFF1392	0.60	+0.1
1,417,839	+		GFF1392	0.61	+0.3
1,417,840	-		GFF1392	0.61	-0.1
1,417,847	-		GFF1392	0.61	-0.6
1,417,891	+		GFF1392	0.64	+0.6
1,417,899	-		GFF1392	0.64	+0.2
1,417,899	-		GFF1392	0.64	-1.0
1,417,899	-		GFF1392	0.64	-2.1
1,417,899	-		GFF1392	0.64	-0.8
1,417,899	-		GFF1392	0.64	-1.3
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1,418,066	+		GFF1392	0.75	-0.5
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1,418,093	+		GFF1392	0.77	-2.6
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1,418,179	+		GFF1392	0.83	-0.5
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1,418,189	+		GFF1392	0.83	+0.0
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1,418,291	+				+0.2
1,418,292	+				-1.3
1,418,298	+				-1.0
1,418,299	-				-0.2
1,418,334	-				-1.3
1,418,341	+				-1.0
1,418,358	+				-1.0
1,418,368	-				-0.4
1,418,373	+				-1.2
1,418,378	+				+0.4
1,418,392	+				-0.4
1,418,392	-				+0.9
1,418,418	-				-0.5
1,418,433	+				+0.5
1,418,441	-				-0.4
1,418,454	+				-0.7
1,418,463	+				-0.3
1,418,469	-				-1.0
1,418,510	+				-1.2
1,418,510	+				-2.2
1,418,520	+				+1.8
1,418,529	+				-0.7
1,418,532	-				+0.5
1,418,536	-				-1.1
1,418,538	+				+1.0
1,418,544	+				-0.7
1,418,546	-				+1.0
1,418,552	-				+1.2
1,418,603	-				-1.0
1,418,620	+				-0.9
1,418,649	+				+0.9
1,418,649	+				+0.5
1,418,649	+				+1.2
1,418,657	-				-0.4
1,418,657	-				+1.3
1,418,657	-				-0.1
1,418,657	-				+1.0
1,418,657	-				-0.2
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