Strain Fitness in Sphingobium sp. HT1-2 around GFF1372

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,394,523	+		GFF1371	0.18	-0.3
1,394,523	+		GFF1371	0.18	-0.2
1,394,531	-		GFF1371	0.18	-0.5
1,394,531	-		GFF1371	0.18	+0.3
1,394,531	-		GFF1371	0.18	-1.2
1,394,540	+		GFF1371	0.19	-2.1
1,394,601	-		GFF1371	0.24	-0.1
1,394,611	+		GFF1371	0.25	+2.2
1,394,620	-		GFF1371	0.26	-0.2
1,394,636	-		GFF1371	0.27	-0.7
1,394,636	-		GFF1371	0.27	-0.7
1,394,641	+		GFF1371	0.27	+2.1
1,394,688	-		GFF1371	0.31	-1.0
1,394,688	-		GFF1371	0.31	-0.6
1,394,688	-		GFF1371	0.31	-0.5
1,394,688	-		GFF1371	0.31	+0.7
1,394,693	-		GFF1371	0.32	-0.6
1,394,715	-		GFF1371	0.34	+1.1
1,394,736	+		GFF1371	0.35	+0.6
1,394,774	+		GFF1371	0.38	-1.4
1,394,778	+		GFF1371	0.39	-0.9
1,394,786	-		GFF1371	0.39	+1.0
1,394,793	+		GFF1371	0.40	-0.4
1,394,801	-		GFF1371	0.41	+0.8
1,394,906	+		GFF1371	0.49	+1.1
1,394,907	+		GFF1371	0.49	-0.6
1,394,907	+		GFF1371	0.49	+0.3
1,394,921	+		GFF1371	0.51	-0.4
1,394,921	+		GFF1371	0.51	-0.1
1,394,929	-		GFF1371	0.51	-0.3
1,394,944	-		GFF1371	0.53	+0.5
1,394,973	+		GFF1371	0.55	-0.2
1,394,973	+		GFF1371	0.55	+0.7
1,394,983	+		GFF1371	0.56	-0.4
1,394,983	+		GFF1371	0.56	-0.6
1,395,042	+		GFF1371	0.61	+0.2
1,395,044	-		GFF1371	0.61	+0.0
1,395,060	+		GFF1371	0.62	+0.5
1,395,070	+		GFF1371	0.63	-1.1
1,395,070	+		GFF1371	0.63	+2.0
1,395,070	+		GFF1371	0.63	-1.0
1,395,070	+		GFF1371	0.63	-0.6
1,395,070	+		GFF1371	0.63	-1.1
1,395,078	+		GFF1371	0.64	-1.2
1,395,078	+		GFF1371	0.64	-1.4
1,395,078	-		GFF1371	0.64	-1.4
1,395,078	-		GFF1371	0.64	+0.9
1,395,078	-		GFF1371	0.64	-0.9
1,395,078	-		GFF1371	0.64	-0.7
1,395,078	-		GFF1371	0.64	-0.2
1,395,078	-		GFF1371	0.64	+0.0
1,395,078	-		GFF1371	0.64	+1.2
1,395,078	-		GFF1371	0.64	-1.2
1,395,086	-		GFF1371	0.64	+0.1
1,395,130	-		GFF1371	0.68	-0.9
1,395,192	-		GFF1371	0.73	-1.9
1,395,192	-		GFF1371	0.73	+1.5
1,395,192	-		GFF1371	0.73	+0.1
1,395,288	-		GFF1371	0.81	-1.9
1,395,304	+		GFF1371	0.82	-0.3
1,395,360	-		GFF1371	0.87	-0.3
1,395,360	-		GFF1371	0.87	-0.1
1,395,363	+		GFF1371	0.87	+0.9
1,395,366	-		GFF1371	0.87	+0.1
1,395,366	-		GFF1371	0.87	+0.7
1,395,366	-		GFF1371	0.87	+0.0
1,395,371	-		GFF1371	0.88	+0.1
1,395,393	-		GFF1371	0.90	+2.0
1,395,406	+				+1.2
1,395,416	+				-0.1
1,395,416	+				-0.7
1,395,417	-				-1.8
1,395,419	-				-0.1
1,395,424	-				+2.5
1,395,445	+				+0.3
1,395,460	+				-1.2
1,395,464	+				+0.5
1,395,464	+				+2.3
1,395,491	+				-1.9
1,395,498	-				-0.1
1,395,516	-				+1.0
1,395,516	-				+0.1
1,395,518	+				-0.9
1,395,518	+				+0.1
1,395,518	+				-1.0
1,395,561	-				-0.3
1,395,590	+				+0.0
1,395,598	+		GFF1372	0.10	+0.8
1,395,598	-		GFF1372	0.10	+0.7
1,395,598	-		GFF1372	0.10	-0.6
1,395,601	-		GFF1372	0.11	+0.1
1,395,631	+		GFF1372	0.14	+0.9
1,395,633	-		GFF1372	0.14	+1.0
1,395,649	+		GFF1372	0.16	+0.3
1,395,657	-		GFF1372	0.17	-1.0
1,395,667	-		GFF1372	0.19	-0.4
1,395,700	+		GFF1372	0.23	-0.6
1,395,708	-		GFF1372	0.24	-1.2
1,395,748	+		GFF1372	0.28	-0.9
1,395,787	+		GFF1372	0.33	-0.7
1,395,792	+		GFF1372	0.34	+0.1
1,395,813	+		GFF1372	0.36	+0.3
1,395,816	-		GFF1372	0.37	+0.5
1,395,823	-		GFF1372	0.37	-0.0
1,395,831	+		GFF1372	0.38	+0.7
1,395,831	+		GFF1372	0.38	+1.6
1,395,839	-		GFF1372	0.39	+0.2
1,395,841	+		GFF1372	0.40	+1.5
1,395,841	+		GFF1372	0.40	-1.9
1,395,841	+		GFF1372	0.40	-0.2
1,395,841	-		GFF1372	0.40	+0.1
1,395,849	-		GFF1372	0.41	-1.2
1,395,849	-		GFF1372	0.41	-1.2
1,395,849	-		GFF1372	0.41	+1.1
1,395,853	+		GFF1372	0.41	-0.7
1,395,861	-		GFF1372	0.42	+0.2
1,395,861	-		GFF1372	0.42	-0.3
1,395,888	+		GFF1372	0.45	+0.8
1,395,888	+		GFF1372	0.45	-1.5
1,395,898	+		GFF1372	0.47	+1.5
1,395,899	+		GFF1372	0.47	-0.9
1,395,905	+		GFF1372	0.47	+0.7
1,395,906	-		GFF1372	0.48	-0.1
1,395,913	-		GFF1372	0.48	-0.4
1,395,913	-		GFF1372	0.48	-0.9
1,395,918	-		GFF1372	0.49	+0.5
1,395,930	+		GFF1372	0.50	-0.8
1,395,938	-		GFF1372	0.51	-1.1
1,395,938	-		GFF1372	0.51	-1.3
1,395,938	-		GFF1372	0.51	+1.3
1,395,940	+		GFF1372	0.52	+0.5
1,395,940	+		GFF1372	0.52	-1.3
1,395,940	+		GFF1372	0.52	+1.5
1,395,945	+		GFF1372	0.52	+0.3
1,395,948	-		GFF1372	0.53	+0.0
1,395,948	-		GFF1372	0.53	-0.2
1,395,948	-		GFF1372	0.53	+1.0
1,395,965	+		GFF1372	0.55	-0.4
1,395,973	-		GFF1372	0.56	+2.7
1,395,997	+		GFF1372	0.59	+1.5
1,395,997	-		GFF1372	0.59	-1.5
1,396,009	+		GFF1372	0.60	+0.9
1,396,030	+		GFF1372	0.63	-0.1
1,396,045	+		GFF1372	0.64	-0.7
1,396,048	-		GFF1372	0.65	-0.1
1,396,053	-		GFF1372	0.65	-2.1
1,396,091	+		GFF1372	0.70	-0.6
1,396,096	+		GFF1372	0.71	-1.5
1,396,096	+		GFF1372	0.71	+0.3
1,396,098	-		GFF1372	0.71	+0.7
1,396,104	-		GFF1372	0.72	-0.3
1,396,104	-		GFF1372	0.72	+1.1
1,396,104	-		GFF1372	0.72	-0.2
1,396,104	-		GFF1372	0.72	+0.9
1,396,127	+		GFF1372	0.74	-0.7
1,396,127	+		GFF1372	0.74	+0.9
1,396,127	+		GFF1372	0.74	+1.5
1,396,135	-		GFF1372	0.75	-0.6
1,396,183	-		GFF1372	0.81	-0.4
1,396,216	-		GFF1372	0.85	+0.1
1,396,241	-		GFF1372	0.88	+1.1
1,396,252	+		GFF1372	0.89	-0.5
1,396,373	-				-0.9
1,396,373	-				-1.0
1,396,375	+				+1.5
1,396,375	+				-1.1
1,396,383	-				-1.9
1,396,422	-				+1.6
1,396,422	-				-0.1
1,396,429	-				+1.7
1,396,459	-				+1.0
1,396,459	-				+0.4
1,396,482	+		GFF1373	0.11	+0.5
1,396,482	+		GFF1373	0.11	+0.7
1,396,487	+		GFF1373	0.12	-0.4
1,396,495	-		GFF1373	0.12	+0.0
1,396,499	-		GFF1373	0.13	+1.1
1,396,528	+		GFF1373	0.15	+1.9
1,396,528	+		GFF1373	0.15	+1.4
1,396,580	-		GFF1373	0.20	+1.2
1,396,610	+		GFF1373	0.22	-0.9
1,396,630	+		GFF1373	0.24	-1.3
1,396,633	-		GFF1373	0.24	+0.9
1,396,638	-		GFF1373	0.25	+1.1
1,396,645	-		GFF1373	0.25	-1.0
1,396,647	+		GFF1373	0.26	+1.6
1,396,651	-		GFF1373	0.26	-1.1
1,396,655	-		GFF1373	0.26	+0.1
1,396,655	-		GFF1373	0.26	-0.8
1,396,707	+		GFF1373	0.31	-2.2
1,396,707	+		GFF1373	0.31	+0.7
1,396,707	+		GFF1373	0.31	+1.0
1,396,715	-		GFF1373	0.31	+0.2
1,396,827	+		GFF1373	0.41	-1.0
1,396,836	+		GFF1373	0.42	+0.2
1,396,842	+		GFF1373	0.42	-0.6
1,396,850	+		GFF1373	0.43	-0.1
1,396,888	-		GFF1373	0.46	+0.4
1,396,888	-		GFF1373	0.46	-1.1
1,396,893	+		GFF1373	0.47	+0.4
1,396,893	+		GFF1373	0.47	-0.3
1,396,921	-		GFF1373	0.49	-1.2
1,396,966	+		GFF1373	0.53	+1.5
1,396,969	-		GFF1373	0.53	-1.0
1,396,971	+		GFF1373	0.54	+0.3
1,396,979	-		GFF1373	0.54	+0.3
1,397,000	-		GFF1373	0.56	+1.7
1,397,025	+		GFF1373	0.58	+0.7
1,397,025	+		GFF1373	0.58	+0.2
1,397,101	+		GFF1373	0.65	-0.1
1,397,103	+		GFF1373	0.65	-1.8
1,397,103	+		GFF1373	0.65	+0.1
1,397,103	+		GFF1373	0.65	+0.9
1,397,103	+		GFF1373	0.65	+1.1
1,397,111	-		GFF1373	0.66	-0.2
1,397,111	-		GFF1373	0.66	-1.1
1,397,124	+		GFF1373	0.67	+0.8
1,397,139	+		GFF1373	0.68	-1.3
1,397,162	+		GFF1373	0.70	+0.3
1,397,189	+		GFF1373	0.72	-1.3
1,397,196	-		GFF1373	0.73	+1.0
1,397,263	+		GFF1373	0.79	-0.6
1,397,276	-		GFF1373	0.80	+0.4
1,397,294	-		GFF1373	0.82	-0.2
1,397,294	-		GFF1373	0.82	-1.0