Strain Fitness in Sphingobium sp. HT1-2 around GFF1300

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,327,608	-				-0.5
1,327,723	-				+0.2
1,327,723	-				-1.5
1,327,729	-				-0.8
1,327,729	-				-1.7
1,327,729	-				-1.2
1,327,934	-		GFF1299	0.44	-1.2
1,327,934	-		GFF1299	0.44	-0.5
1,327,934	-		GFF1299	0.44	-1.5
1,327,940	-		GFF1299	0.45	-1.0
1,327,984	-		GFF1299	0.54	-0.6
1,328,102	-		GFF1299	0.79	-1.4
1,328,102	-		GFF1299	0.79	-1.1
1,328,102	-		GFF1299	0.79	-1.4
1,328,102	-		GFF1299	0.79	-2.6
1,328,102	-		GFF1299	0.79	-0.5
1,328,102	-		GFF1299	0.79	-1.8
1,328,102	-		GFF1299	0.79	-1.3
1,328,102	-		GFF1299	0.79	-0.6
1,328,180	-				-1.4
1,328,240	-				+0.7
1,328,240	-				+1.0
1,328,256	+				-0.6
1,328,259	-				-0.9
1,328,265	-				+0.5
1,328,266	-				-0.4
1,328,289	-				-0.8
1,328,289	-				+0.3
1,328,289	-				-1.2
1,328,294	-				-0.1
1,328,300	+				+0.1
1,328,300	+				+0.1
1,328,300	+				-0.6
1,328,308	-				-2.5
1,328,317	+				-0.6
1,328,325	+				+0.9
1,328,325	-				-0.7
1,328,333	-				-0.1
1,328,342	+				-0.8
1,328,347	+				-0.6
1,328,347	+				+0.4
1,328,355	-				-0.0
1,328,355	-				+0.2
1,328,371	+				+0.4
1,328,379	-				-0.5
1,328,379	-				-0.2
1,328,379	-				+0.8
1,328,379	-				-0.9
1,328,379	-				+1.8
1,328,401	-				+0.9
1,328,401	-				-2.0
1,328,411	-				-0.1
1,328,416	+				-0.4
1,328,418	+				-0.9
1,328,424	-				-1.8
1,328,424	-				-0.9
1,328,439	+				+0.3
1,328,446	-				-1.2
1,328,447	-				+0.5
1,328,455	+				-1.0
1,328,475	+				-0.8
1,328,477	-				-1.0
1,328,491	+				-0.5
1,328,491	+				+0.1
1,328,499	-				+0.1
1,328,499	-				-0.7
1,328,499	-				-0.5
1,328,499	-				-1.0
1,328,507	-				-0.6
1,328,562	+		GFF1300	0.18	-1.6
1,328,562	+		GFF1300	0.18	-0.6
1,328,562	+		GFF1300	0.18	-0.9
1,328,562	+		GFF1300	0.18	-1.2
1,328,562	+		GFF1300	0.18	-1.5
1,328,570	-		GFF1300	0.19	-1.2
1,328,570	-		GFF1300	0.19	-1.1
1,328,570	-		GFF1300	0.19	-0.9
1,328,570	-		GFF1300	0.19	-0.7
1,328,570	-		GFF1300	0.19	-0.7
1,328,570	-		GFF1300	0.19	-0.4
1,328,677	+		GFF1300	0.34	-1.1
1,328,685	-		GFF1300	0.36	-0.3
1,328,685	-		GFF1300	0.36	-0.4
1,328,697	+		GFF1300	0.37	-0.7
1,328,724	+		GFF1300	0.41	-1.1
1,328,733	-		GFF1300	0.43	-0.5
1,328,742	-		GFF1300	0.44	-0.6
1,328,793	+		GFF1300	0.51	-0.7
1,328,801	-		GFF1300	0.52	-0.3
1,328,801	-		GFF1300	0.52	-0.6
1,328,801	-		GFF1300	0.52	-1.1
1,328,801	-		GFF1300	0.52	-0.8
1,328,801	-		GFF1300	0.52	-0.8
1,328,820	+		GFF1300	0.55	-1.4
1,328,834	-		GFF1300	0.57	-0.4
1,328,840	-		GFF1300	0.58	-0.4
1,328,840	-		GFF1300	0.58	-0.5
1,328,840	-		GFF1300	0.58	-0.7
1,328,840	-		GFF1300	0.58	-1.5
1,328,845	-		GFF1300	0.59	-1.6
1,328,849	-		GFF1300	0.59	-1.5
1,328,861	-		GFF1300	0.61	-1.1
1,328,923	+		GFF1300	0.70	-0.4
1,328,923	+		GFF1300	0.70	-1.5
1,328,930	+		GFF1300	0.71	-0.4
1,328,936	-		GFF1300	0.72	-0.3
1,328,938	-		GFF1300	0.72	-1.1
1,328,951	+		GFF1300	0.74	+0.7
1,328,951	+		GFF1300	0.74	-0.6
1,328,951	+		GFF1300	0.74	-0.4
1,328,951	+		GFF1300	0.74	-0.7
1,328,951	+		GFF1300	0.74	-0.6
1,328,951	+		GFF1300	0.74	-1.1
1,328,951	+		GFF1300	0.74	-0.7
1,328,951	+		GFF1300	0.74	-0.4
1,328,951	+		GFF1300	0.74	-0.6
1,328,951	+		GFF1300	0.74	-1.2
1,328,951	+		GFF1300	0.74	-0.3
1,328,951	+		GFF1300	0.74	-1.4
1,328,951	+		GFF1300	0.74	-1.1
1,328,951	+		GFF1300	0.74	-1.5
1,328,951	+		GFF1300	0.74	-0.8
1,328,951	+		GFF1300	0.74	-0.4
1,328,951	+		GFF1300	0.74	-0.4
1,328,951	+		GFF1300	0.74	-0.5
1,328,959	-		GFF1300	0.75	-0.3
1,328,959	-		GFF1300	0.75	-1.4
1,328,959	-		GFF1300	0.75	-0.9
1,328,959	-		GFF1300	0.75	+0.7
1,328,959	-		GFF1300	0.75	-0.9
1,328,959	-		GFF1300	0.75	-0.7
1,328,959	-		GFF1300	0.75	-1.0
1,328,959	-		GFF1300	0.75	-0.7
1,328,959	-		GFF1300	0.75	-1.1
1,328,959	-		GFF1300	0.75	-1.1
1,328,959	-		GFF1300	0.75	-1.1
1,328,959	-		GFF1300	0.75	-0.1
1,328,959	-		GFF1300	0.75	-1.2
1,328,959	-		GFF1300	0.75	-0.7
1,328,959	-		GFF1300	0.75	-0.9
1,328,959	-		GFF1300	0.75	-1.3
1,328,959	-		GFF1300	0.75	-0.3
1,328,964	+		GFF1300	0.76	-2.0
1,328,964	+		GFF1300	0.76	-2.2
1,328,972	-		GFF1300	0.77	-0.4
1,329,020	+		GFF1300	0.84	-0.3
1,329,035	+		GFF1300	0.86	-0.6
1,329,091	-				-0.8
1,329,092	+				-1.6
1,329,092	+				-0.6
1,329,151	+				+1.3
1,329,153	-				-0.2
1,329,153	-				-1.1
1,329,160	-				-1.2
1,329,176	-				+1.0
1,329,204	-				-1.7
1,329,206	+				-1.9
1,329,206	+				+1.0
1,329,206	+				-0.4
1,329,206	+				-0.3
1,329,206	+				-1.7
1,329,206	+				-1.4
1,329,206	+				-1.5
1,329,206	+				-0.8
1,329,206	+				-1.0
1,329,206	+				-0.0
1,329,206	+				+0.5
1,329,206	+				+0.4
1,329,211	+				+1.0
1,329,211	+				+0.7
1,329,211	+				-0.9
1,329,211	+				-1.2
1,329,211	+				+0.2
1,329,211	+				+0.1
1,329,211	+				+0.4
1,329,211	+				+0.7
1,329,214	-				-1.2
1,329,214	-				+0.3
1,329,214	-				-0.5
1,329,214	-				+0.4
1,329,214	-				-0.2
1,329,214	-				-1.9
1,329,214	-				-0.3
1,329,214	-				-0.1
1,329,214	-				+0.5
1,329,214	-				+0.6
1,329,214	-				+0.7
1,329,214	-				-0.5
1,329,214	-				+0.4
1,329,214	-				+0.8
1,329,214	-				+0.6
1,329,214	-				-3.0
1,329,214	-				-0.6
1,329,214	-				+0.7
1,329,214	-				+0.4
1,329,214	-				+1.0
1,329,214	-				+0.3
1,329,219	-				+0.8
1,329,219	-				-0.7
1,329,257	-				-1.5
1,329,326	+				+0.1
1,329,329	-				-1.1
1,329,331	+				-2.5
1,329,339	-				+0.7
1,329,358	+				-0.7
1,329,358	+				+0.4
1,329,363	+				-0.4
1,329,368	+				-0.8
1,329,368	+				-0.5
1,329,368	+				+0.4
1,329,368	+				-0.7
1,329,368	+				-1.3
1,329,368	+				-1.2
1,329,368	+				+1.8
1,329,368	+				-0.1
1,329,368	+				+1.1
1,329,368	+				-0.5
1,329,368	+				-0.2
1,329,368	+				+0.2
1,329,368	+				+0.9
1,329,368	+				-0.3
1,329,368	+				-0.9
1,329,368	+				-0.1
1,329,368	+				-0.6
1,329,368	+				+1.8
1,329,368	+				+0.8
1,329,368	+				+1.3
1,329,368	+				-0.9
1,329,368	+				-1.0
1,329,368	+				-0.1
1,329,368	+				-1.0
1,329,368	+				-1.1
1,329,368	+				+1.4
1,329,368	+				-1.4
1,329,368	+				-1.2
1,329,368	+				-0.6
1,329,368	+				-0.5
1,329,368	+				-0.0
1,329,368	+				-1.0
1,329,368	+				-0.8
1,329,368	+				+0.4
1,329,368	+				+0.4
1,329,368	+				+0.3
1,329,373	+				-0.3
1,329,373	+				-0.7
1,329,376	-				-1.4
1,329,376	-				-0.2
1,329,376	-				+0.3
1,329,376	-				-0.5
1,329,376	-				+0.4
1,329,376	-				-0.5
1,329,376	-				+0.0
1,329,376	-				-0.7
1,329,376	-				-1.1
1,329,376	-				-0.8
1,329,376	-				+0.4
1,329,376	-				-2.0
1,329,376	-				-1.8
1,329,376	-				+0.7
1,329,376	-				+0.1
1,329,376	-				-1.7
1,329,376	-				-0.2
1,329,376	-				+0.1
1,329,376	-				-0.4
1,329,376	-				-0.5
1,329,376	-				-0.5
1,329,376	-				-0.2
1,329,376	-				-0.4
1,329,376	-				+0.1
1,329,376	-				+1.3
1,329,376	-				-1.3
1,329,376	-				-2.0
1,329,376	-				+0.4
1,329,376	-				-0.3
1,329,378	+				+0.6
1,329,378	+				+0.3
1,329,378	+				-0.2
1,329,378	+				-0.3
1,329,378	+				+0.9
1,329,381	-				+0.4
1,329,381	-				+0.2
1,329,386	-				+0.2
1,329,386	-				-2.2
1,329,386	-				-1.6
1,329,386	-				+0.2
1,329,386	-				-2.1
1,329,391	+				+0.0
1,329,409	-				+0.8
1,329,409	-				-2.2
1,329,434	-				+0.6
1,329,446	+				+0.5
1,329,470	+				-1.3
1,329,470	+				-0.0
1,329,471	-		GFF1301	0.10	+0.4
1,329,478	-		GFF1301	0.10	-1.1
1,329,478	-		GFF1301	0.10	-0.4
1,329,481	+		GFF1301	0.11	-0.8
1,329,481	+		GFF1301	0.11	+0.7
1,329,489	-		GFF1301	0.11	-2.2
1,329,489	-		GFF1301	0.11	+0.6
1,329,489	-		GFF1301	0.11	-1.2
1,329,517	-		GFF1301	0.12	+0.1
1,329,525	-		GFF1301	0.13	+0.5
1,329,572	+		GFF1301	0.15	-0.7
1,329,572	+		GFF1301	0.15	+0.4
1,329,572	+		GFF1301	0.15	+0.6
1,329,572	+		GFF1301	0.15	+1.0
1,329,572	+		GFF1301	0.15	-0.4
1,329,577	+		GFF1301	0.16	-0.0
1,329,578	+		GFF1301	0.16	+1.3
1,329,579	-		GFF1301	0.16	+0.7
1,329,580	-		GFF1301	0.16	-3.0
1,329,580	-		GFF1301	0.16	+0.7
1,329,580	-		GFF1301	0.16	-0.2
1,329,635	+		GFF1301	0.19	-0.8
1,329,652	-		GFF1301	0.20	-0.3
1,329,688	+		GFF1301	0.22	+0.1
1,329,688	+		GFF1301	0.22	-1.0
1,329,695	+		GFF1301	0.22	-1.6
1,329,695	+		GFF1301	0.22	+0.1
1,329,696	-		GFF1301	0.22	-0.9
1,329,703	-		GFF1301	0.22	-0.9
1,329,706	-		GFF1301	0.23	-0.6
1,329,717	-		GFF1301	0.23	+0.7
1,329,739	-		GFF1301	0.24	+0.8
1,329,741	+		GFF1301	0.24	-0.2
1,329,741	+		GFF1301	0.24	-0.5
1,329,741	+		GFF1301	0.24	-0.2
1,329,749	-		GFF1301	0.25	+1.2
1,329,749	-		GFF1301	0.25	+0.5
1,329,749	-		GFF1301	0.25	+1.4
1,329,749	-		GFF1301	0.25	-0.4
1,329,749	-		GFF1301	0.25	+0.7
1,329,797	+		GFF1301	0.27	+0.3
1,329,797	+		GFF1301	0.27	+0.8
1,329,799	+		GFF1301	0.27	+0.2
1,329,805	-		GFF1301	0.28	+0.2
1,329,805	-		GFF1301	0.28	-0.4
1,329,815	-		GFF1301	0.28	+1.1
1,329,828	-		GFF1301	0.29	-0.4
1,329,833	+		GFF1301	0.29	+0.3
1,329,834	+		GFF1301	0.29	-0.9
1,329,835	+		GFF1301	0.29	-0.9
1,329,835	+		GFF1301	0.29	-0.5
1,329,856	+		GFF1301	0.30	+0.6
1,329,857	+		GFF1301	0.31	-0.2
1,329,876	+		GFF1301	0.32	-1.6
1,329,876	+		GFF1301	0.32	-2.3
1,329,876	+		GFF1301	0.32	-1.6
1,329,876	+		GFF1301	0.32	-0.8
1,329,876	+		GFF1301	0.32	+0.1
1,329,876	+		GFF1301	0.32	-1.7
1,329,884	-		GFF1301	0.32	+0.1
1,329,884	-		GFF1301	0.32	-1.0
1,329,884	-		GFF1301	0.32	-0.5
1,329,884	-		GFF1301	0.32	+0.2
1,329,884	-		GFF1301	0.32	-0.5
1,329,884	-		GFF1301	0.32	+1.7
1,329,884	-		GFF1301	0.32	+0.2
1,329,884	-		GFF1301	0.32	-1.9
1,329,884	-		GFF1301	0.32	+0.8
1,329,884	-		GFF1301	0.32	-2.5
1,329,904	+		GFF1301	0.33	+1.3
1,329,904	+		GFF1301	0.33	+0.4
1,329,904	+		GFF1301	0.33	-1.5
1,329,911	+		GFF1301	0.33	+0.3
1,329,912	-		GFF1301	0.33	+1.8
1,329,919	+		GFF1301	0.34	+0.3
1,329,919	+		GFF1301	0.34	-1.5
1,329,924	+		GFF1301	0.34	-1.3
1,329,927	-		GFF1301	0.34	-1.6
1,329,927	-		GFF1301	0.34	-1.1
1,329,931	-		GFF1301	0.34	-0.4
1,329,932	-		GFF1301	0.35	-0.5
1,329,937	-		GFF1301	0.35	-0.4
1,329,952	+		GFF1301	0.36	-0.7
1,329,960	+		GFF1301	0.36	+0.1
1,329,967	+		GFF1301	0.36	+1.0
1,329,968	-		GFF1301	0.36	-0.2
1,329,977	+		GFF1301	0.37	+1.2
1,329,977	+		GFF1301	0.37	-1.2
1,329,990	+		GFF1301	0.38	-0.9
1,329,998	-		GFF1301	0.38	-0.9
1,329,998	-		GFF1301	0.38	-0.2
1,330,003	-		GFF1301	0.38	-0.1
1,330,025	-		GFF1301	0.39	-0.1
1,330,041	+		GFF1301	0.40	+0.1
1,330,046	+		GFF1301	0.41	+0.7
1,330,046	+		GFF1301	0.41	-0.5
1,330,046	+		GFF1301	0.41	+1.6
1,330,054	-		GFF1301	0.41	-0.3
1,330,054	-		GFF1301	0.41	-1.3
1,330,054	-		GFF1301	0.41	-1.5
1,330,054	-		GFF1301	0.41	+0.1
1,330,054	-		GFF1301	0.41	-0.3
1,330,054	-		GFF1301	0.41	-0.1
1,330,054	-		GFF1301	0.41	+0.5
1,330,054	-		GFF1301	0.41	+0.3
1,330,054	-		GFF1301	0.41	-1.3
1,330,054	-		GFF1301	0.41	-0.0
1,330,059	-		GFF1301	0.41	-0.6
1,330,059	-		GFF1301	0.41	+0.6
1,330,064	-		GFF1301	0.42	+0.4
1,330,099	+		GFF1301	0.43	-0.1
1,330,099	+		GFF1301	0.43	+0.9
1,330,099	+		GFF1301	0.43	-0.0
1,330,099	+		GFF1301	0.43	+0.7
1,330,099	+		GFF1301	0.43	-1.4
1,330,099	+		GFF1301	0.43	-1.0
1,330,099	+		GFF1301	0.43	-0.4
1,330,099	+		GFF1301	0.43	+0.9
1,330,099	+		GFF1301	0.43	+0.7
1,330,099	+		GFF1301	0.43	-0.3
1,330,099	+		GFF1301	0.43	-0.8
1,330,099	+		GFF1301	0.43	-0.1
1,330,099	+		GFF1301	0.43	+1.7
1,330,099	+		GFF1301	0.43	-1.2
1,330,099	+		GFF1301	0.43	+1.1
1,330,099	+		GFF1301	0.43	-2.0
1,330,099	+		GFF1301	0.43	+0.1
1,330,099	+		GFF1301	0.43	-1.2
1,330,099	+		GFF1301	0.43	+1.3
1,330,107	-		GFF1301	0.44	-0.0
1,330,107	-		GFF1301	0.44	+0.5
1,330,107	-		GFF1301	0.44	+0.0
1,330,107	-		GFF1301	0.44	-1.2
1,330,107	-		GFF1301	0.44	+0.8
1,330,107	-		GFF1301	0.44	-0.6
1,330,107	-		GFF1301	0.44	-0.3
1,330,107	-		GFF1301	0.44	+0.2
1,330,107	-		GFF1301	0.44	-1.1
1,330,107	-		GFF1301	0.44	-0.6
1,330,107	-		GFF1301	0.44	+0.3
1,330,107	-		GFF1301	0.44	+0.3
1,330,107	-		GFF1301	0.44	-0.4
1,330,107	-		GFF1301	0.44	-0.6
1,330,107	-		GFF1301	0.44	+1.2
1,330,107	-		GFF1301	0.44	+0.6
1,330,107	-		GFF1301	0.44	+0.8
1,330,107	-		GFF1301	0.44	-0.3
1,330,107	-		GFF1301	0.44	+0.6
1,330,115	+		GFF1301	0.44	-1.8