Strain Fitness in Sphingobium sp. HT1-2 around GFF1132

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,136,043	+		GFF1131	0.29	-0.4
1,136,043	+		GFF1131	0.29	-0.8
1,136,043	+		GFF1131	0.29	+0.1
1,136,051	-		GFF1131	0.30	-0.9
1,136,051	-		GFF1131	0.30	-0.4
1,136,051	-		GFF1131	0.30	+1.3
1,136,053	+		GFF1131	0.30	-0.2
1,136,060	-		GFF1131	0.31	-0.4
1,136,070	+		GFF1131	0.32	-0.4
1,136,075	+		GFF1131	0.32	-1.0
1,136,078	-		GFF1131	0.33	+0.8
1,136,083	-		GFF1131	0.33	-0.1
1,136,110	-		GFF1131	0.36	-3.0
1,136,158	-		GFF1131	0.40	-2.3
1,136,172	-		GFF1131	0.41	+0.8
1,136,177	+		GFF1131	0.42	-0.4
1,136,177	+		GFF1131	0.42	+0.8
1,136,177	+		GFF1131	0.42	+0.5
1,136,177	+		GFF1131	0.42	+0.0
1,136,177	+		GFF1131	0.42	-2.2
1,136,177	+		GFF1131	0.42	-0.6
1,136,177	+		GFF1131	0.42	-1.6
1,136,185	-		GFF1131	0.42	+1.2
1,136,185	-		GFF1131	0.42	-0.3
1,136,207	-		GFF1131	0.44	+0.9
1,136,211	+		GFF1131	0.45	+1.5
1,136,213	+		GFF1131	0.45	-0.7
1,136,213	+		GFF1131	0.45	-0.5
1,136,213	+		GFF1131	0.45	+0.9
1,136,213	+		GFF1131	0.45	+0.4
1,136,213	+		GFF1131	0.45	+1.2
1,136,221	-		GFF1131	0.46	-0.5
1,136,221	-		GFF1131	0.46	+0.2
1,136,221	-		GFF1131	0.46	-2.6
1,136,243	+		GFF1131	0.48	-1.0
1,136,243	+		GFF1131	0.48	-1.0
1,136,243	+		GFF1131	0.48	-0.9
1,136,243	+		GFF1131	0.48	-1.7
1,136,251	-		GFF1131	0.48	-1.1
1,136,251	-		GFF1131	0.48	+0.4
1,136,251	-		GFF1131	0.48	+2.0
1,136,253	+		GFF1131	0.49	-0.1
1,136,253	+		GFF1131	0.49	-0.0
1,136,253	+		GFF1131	0.49	-0.4
1,136,260	+		GFF1131	0.49	-0.8
1,136,268	-		GFF1131	0.50	-1.5
1,136,288	+		GFF1131	0.52	+0.2
1,136,288	+		GFF1131	0.52	-0.4
1,136,288	+		GFF1131	0.52	-1.8
1,136,288	+		GFF1131	0.52	+0.4
1,136,288	+		GFF1131	0.52	-0.5
1,136,288	+		GFF1131	0.52	+1.1
1,136,288	+		GFF1131	0.52	+0.3
1,136,288	+		GFF1131	0.52	+0.5
1,136,291	-		GFF1131	0.52	-0.3
1,136,291	-		GFF1131	0.52	+0.2
1,136,293	+		GFF1131	0.52	-0.6
1,136,293	+		GFF1131	0.52	-2.3
1,136,293	+		GFF1131	0.52	-1.6
1,136,293	+		GFF1131	0.52	-0.4
1,136,293	+		GFF1131	0.52	-1.7
1,136,293	+		GFF1131	0.52	+1.1
1,136,293	+		GFF1131	0.52	+0.9
1,136,293	+		GFF1131	0.52	-0.0
1,136,293	+		GFF1131	0.52	-0.4
1,136,293	+		GFF1131	0.52	+0.7
1,136,296	-		GFF1131	0.52	-0.6
1,136,296	-		GFF1131	0.52	+0.3
1,136,296	-		GFF1131	0.52	-0.9
1,136,296	-		GFF1131	0.52	-1.1
1,136,296	-		GFF1131	0.52	+0.2
1,136,296	-		GFF1131	0.52	-0.9
1,136,301	-		GFF1131	0.53	-0.2
1,136,301	-		GFF1131	0.53	-1.6
1,136,301	-		GFF1131	0.53	-1.5
1,136,301	-		GFF1131	0.53	-0.4
1,136,301	-		GFF1131	0.53	-0.3
1,136,301	-		GFF1131	0.53	-0.5
1,136,301	-		GFF1131	0.53	-1.6
1,136,301	-		GFF1131	0.53	-0.1
1,136,301	-		GFF1131	0.53	-1.3
1,136,301	-		GFF1131	0.53	-0.2
1,136,301	-		GFF1131	0.53	-0.8
1,136,301	-		GFF1131	0.53	+0.3
1,136,301	-		GFF1131	0.53	-0.7
1,136,301	-		GFF1131	0.53	+0.2
1,136,301	-		GFF1131	0.53	-1.1
1,136,301	-		GFF1131	0.53	-0.4
1,136,301	-		GFF1131	0.53	-0.6
1,136,301	-		GFF1131	0.53	-1.4
1,136,301	-		GFF1131	0.53	+1.0
1,136,301	-		GFF1131	0.53	-0.3
1,136,306	-		GFF1131	0.53	+0.3
1,136,307	+		GFF1131	0.53	+1.0
1,136,307	+		GFF1131	0.53	+0.6
1,136,315	-		GFF1131	0.54	-1.2
1,136,328	-		GFF1131	0.55	+0.6
1,136,352	-		GFF1131	0.58	-1.2
1,136,362	+		GFF1131	0.58	+0.2
1,136,362	+		GFF1131	0.58	-0.6
1,136,362	+		GFF1131	0.58	+0.2
1,136,370	-		GFF1131	0.59	-0.6
1,136,370	-		GFF1131	0.59	+0.4
1,136,370	-		GFF1131	0.59	-1.7
1,136,370	-		GFF1131	0.59	+0.8
1,136,382	-		GFF1131	0.60	-0.5
1,136,392	+		GFF1131	0.61	-2.0
1,136,392	+		GFF1131	0.61	+0.3
1,136,392	+		GFF1131	0.61	-0.3
1,136,398	-		GFF1131	0.62	-0.7
1,136,400	-		GFF1131	0.62	-0.6
1,136,402	+		GFF1131	0.62	-0.3
1,136,402	+		GFF1131	0.62	-1.1
1,136,410	-		GFF1131	0.63	+1.2
1,136,410	-		GFF1131	0.63	-0.9
1,136,410	-		GFF1131	0.63	+0.3
1,136,410	-		GFF1131	0.63	+0.1
1,136,412	+		GFF1131	0.63	-1.7
1,136,420	-		GFF1131	0.64	-0.7
1,136,448	+		GFF1131	0.66	+0.2
1,136,448	+		GFF1131	0.66	-0.7
1,136,453	+		GFF1131	0.67	+1.2
1,136,453	+		GFF1131	0.67	-0.6
1,136,453	+		GFF1131	0.67	+0.5
1,136,461	-		GFF1131	0.67	-0.5
1,136,461	-		GFF1131	0.67	+0.8
1,136,461	-		GFF1131	0.67	-1.1
1,136,469	-		GFF1131	0.68	-1.2
1,136,478	-		GFF1131	0.69	+0.2
1,136,499	-		GFF1131	0.71	-0.2
1,136,509	-		GFF1131	0.72	-2.1
1,136,529	+		GFF1131	0.74	-1.0
1,136,550	-		GFF1131	0.76	-0.1
1,136,560	+		GFF1131	0.77	+0.4
1,136,563	+		GFF1131	0.77	-0.8
1,136,563	+		GFF1131	0.77	+0.5
1,136,563	+		GFF1131	0.77	+1.1
1,136,571	-		GFF1131	0.78	-0.7
1,136,576	+		GFF1131	0.78	-1.1
1,136,576	+		GFF1131	0.78	+0.2
1,136,597	-		GFF1131	0.80	+1.1
1,136,624	+		GFF1131	0.82	-1.8
1,136,624	+		GFF1131	0.82	-2.1
1,136,642	-		GFF1131	0.84	+0.2
1,136,655	+		GFF1131	0.85	+0.5
1,136,655	-		GFF1131	0.85	-0.7
1,136,663	-		GFF1131	0.86	+1.2
1,136,671	+		GFF1131	0.87	-0.6
1,136,671	+		GFF1131	0.87	-0.0
1,136,671	+		GFF1131	0.87	+0.4
1,136,671	+		GFF1131	0.87	-0.9
1,136,671	+		GFF1131	0.87	+0.5
1,136,679	-		GFF1131	0.87	+0.2
1,136,679	-		GFF1131	0.87	+1.0
1,136,679	-		GFF1131	0.87	-0.4
1,136,679	-		GFF1131	0.87	+0.4
1,136,686	-		GFF1131	0.88	-0.9
1,136,687	+		GFF1131	0.88	-0.5
1,136,700	-		GFF1131	0.89	-0.9
1,136,709	-				-0.7
1,136,738	+				-0.6
1,136,746	-				-0.7
1,136,750	+				-1.3
1,136,755	+				-0.9
1,136,758	-				-0.9
1,136,763	-				+1.0
1,136,763	-				+0.4
1,136,784	+				-1.2
1,136,797	+				-0.5
1,136,810	+				-1.2
1,136,811	+				+0.3
1,136,819	-				+0.9
1,136,819	-				-0.8
1,136,855	+				-0.9
1,136,855	+				-0.9
1,136,860	+				-1.4
1,136,863	-				+0.4
1,136,863	-				-0.4
1,136,863	-				-1.6
1,136,863	-				-0.5
1,136,865	+				-1.2
1,136,873	-				-1.2
1,136,881	+				-1.0
1,136,899	+				+0.4
1,136,907	-				-1.4
1,136,907	-				+0.4
1,136,927	+				-1.0
1,136,929	+				+1.2
1,136,929	+				+1.6
1,136,935	-				-1.6
1,136,943	-				-0.2
1,136,965	-				-0.8
1,136,990	+				-1.1
1,136,995	+				+0.4
1,137,000	+				-0.1
1,137,000	+				-0.9
1,137,000	+				-0.6
1,137,003	-				+0.4
1,137,003	-				-2.0
1,137,005	+				-1.8
1,137,005	+				-1.2
1,137,006	+				-1.7
1,137,008	-				-0.8
1,137,008	-				+0.6
1,137,008	-				-1.8
1,137,013	-				+0.2
1,137,014	-				-1.5
1,137,023	+				-1.3
1,137,023	+				+0.6
1,137,023	+				-0.6
1,137,023	+				+0.5
1,137,023	+				-1.4
1,137,023	+				-0.6
1,137,023	+				-1.2
1,137,023	+				-1.2
1,137,031	-				-1.4
1,137,031	-				+0.3
1,137,031	-				-0.1
1,137,031	-				+0.1
1,137,031	-				-1.0
1,137,031	-				+0.7
1,137,031	-				-1.9
1,137,031	-				-0.8
1,137,031	-				+0.0
1,137,054	+				+0.2
1,137,064	-				+0.1
1,137,074	+				-0.0
1,137,078	+				+0.6
1,137,078	+				+0.6
1,137,086	-				-0.7
1,137,113	-		GFF1132	0.12	-2.7
1,137,113	-		GFF1132	0.12	-1.3
1,137,115	+		GFF1132	0.13	+0.2
1,137,117	+		GFF1132	0.13	-0.7
1,137,152	+		GFF1132	0.17	+0.0
1,137,162	-		GFF1132	0.19	+0.3
1,137,166	-		GFF1132	0.19	-0.6
1,137,167	-		GFF1132	0.19	-0.9
1,137,167	-		GFF1132	0.19	-1.2
1,137,168	+		GFF1132	0.19	+0.9
1,137,169	+		GFF1132	0.19	-1.2
1,137,169	+		GFF1132	0.19	+1.2
1,137,169	+		GFF1132	0.19	+0.2
1,137,169	+		GFF1132	0.19	+0.1
1,137,170	+		GFF1132	0.20	+0.3
1,137,170	+		GFF1132	0.20	+1.3
1,137,170	+		GFF1132	0.20	-0.0
1,137,173	+		GFF1132	0.20	-1.3
1,137,176	-		GFF1132	0.20	-0.3
1,137,177	-		GFF1132	0.20	-0.9
1,137,177	-		GFF1132	0.20	+0.0
1,137,177	-		GFF1132	0.20	+0.8
1,137,177	-		GFF1132	0.20	-2.3
1,137,177	-		GFF1132	0.20	-0.4
1,137,177	-		GFF1132	0.20	+0.2
1,137,177	-		GFF1132	0.20	+0.8
1,137,177	-		GFF1132	0.20	-1.4
1,137,179	+		GFF1132	0.21	-0.7
1,137,239	+		GFF1132	0.28	-0.9
1,137,247	-		GFF1132	0.29	-0.5
1,137,248	-		GFF1132	0.30	-0.4
1,137,252	+		GFF1132	0.30	-0.7
1,137,284	+		GFF1132	0.34	-0.4
1,137,307	+		GFF1132	0.37	+0.0
1,137,307	+		GFF1132	0.37	-0.3
1,137,307	+		GFF1132	0.37	-2.3
1,137,307	+		GFF1132	0.37	-1.7
1,137,307	+		GFF1132	0.37	+0.0
1,137,315	-		GFF1132	0.38	-0.2
1,137,315	-		GFF1132	0.38	-1.2
1,137,315	-		GFF1132	0.38	-0.8
1,137,335	+		GFF1132	0.41	+0.5
1,137,353	-		GFF1132	0.43	-0.2
1,137,393	+		GFF1132	0.48	-0.9
1,137,401	+		GFF1132	0.49	-0.2
1,137,406	-		GFF1132	0.50	+1.0
1,137,409	-		GFF1132	0.50	-0.3
1,137,439	+		GFF1132	0.54	+0.7
1,137,439	+		GFF1132	0.54	-0.6
1,137,454	+		GFF1132	0.56	-0.2
1,137,457	-		GFF1132	0.56	+1.0
1,137,462	-		GFF1132	0.57	-1.0
1,137,462	-		GFF1132	0.57	+0.9
1,137,475	+		GFF1132	0.58	-2.6
1,137,488	-		GFF1132	0.60	-0.8
1,137,504	+		GFF1132	0.62	-2.3
1,137,520	+		GFF1132	0.64	-0.4
1,137,522	+		GFF1132	0.64	+0.3
1,137,528	-		GFF1132	0.65	+1.2
1,137,537	+		GFF1132	0.66	+0.6
1,137,537	+		GFF1132	0.66	-0.2
1,137,537	+		GFF1132	0.66	-0.2
1,137,539	+		GFF1132	0.67	+0.0
1,137,540	-		GFF1132	0.67	-0.5
1,137,542	+		GFF1132	0.67	-0.7
1,137,545	+		GFF1132	0.67	+0.1
1,137,547	-		GFF1132	0.68	+0.3
1,137,550	+		GFF1132	0.68	-0.5
1,137,550	+		GFF1132	0.68	-0.6
1,137,550	+		GFF1132	0.68	+0.6
1,137,550	+		GFF1132	0.68	-0.9
1,137,553	-		GFF1132	0.68	-1.0
1,137,555	+		GFF1132	0.69	-1.8
1,137,558	-		GFF1132	0.69	+1.1
1,137,558	-		GFF1132	0.69	+0.1
1,137,590	+		GFF1132	0.73	-1.2
1,137,597	+		GFF1132	0.74	+0.0
1,137,616	+		GFF1132	0.76	-0.2
1,137,622	+		GFF1132	0.77	-0.1
1,137,627	+		GFF1132	0.78	-0.9
1,137,627	-		GFF1132	0.78	-0.2
1,137,627	-		GFF1132	0.78	-1.0
1,137,635	-		GFF1132	0.79	+0.4
1,137,658	+		GFF1132	0.82	-0.1
1,137,658	+		GFF1132	0.82	-0.7
1,137,671	-		GFF1132	0.83	+0.3
1,137,671	-		GFF1132	0.83	+0.3
1,137,677	-		GFF1132	0.84	-0.2
1,137,686	+		GFF1132	0.85	-0.4
1,137,686	+		GFF1132	0.85	-1.4
1,137,686	+		GFF1132	0.85	-0.6
1,137,686	+		GFF1132	0.85	+0.5
1,137,686	+		GFF1132	0.85	-0.1
1,137,694	-		GFF1132	0.86	-1.4
1,137,706	-		GFF1132	0.88	+0.2
1,137,706	-		GFF1132	0.88	-1.2
1,137,708	+		GFF1132	0.88	+0.8
1,137,708	+		GFF1132	0.88	-1.1
1,137,710	+		GFF1132	0.88	-0.5
1,137,721	+		GFF1132	0.90	-0.8
1,137,721	+		GFF1132	0.90	+1.1
1,137,721	+		GFF1132	0.90	-0.1
1,137,728	+				-0.4
1,137,729	-				+0.1
1,137,738	+				+0.2
1,137,751	+				+0.2
1,137,751	+				-0.2
1,137,751	+				+0.3
1,137,751	+				+0.3
1,137,751	+				-0.4
1,137,751	+				-0.4
1,137,751	+				-1.7
1,137,751	+				-0.6
1,137,751	+				-0.6
1,137,751	+				-0.1
1,137,751	+				+0.7
1,137,751	+				-0.5
1,137,751	+				+0.6
1,137,751	+				+0.3
1,137,751	+				+0.2
1,137,751	+				+1.2
1,137,751	+				-2.0
1,137,751	+				+0.4
1,137,751	+				-1.6
1,137,751	+				-1.0
1,137,751	+				-1.1
1,137,751	+				-1.2
1,137,751	+				+0.3
1,137,751	+				-0.2
1,137,751	+				-0.8
1,137,751	+				-1.8
1,137,751	+				-1.4
1,137,754	-				+1.3
1,137,759	-				+0.7
1,137,759	-				-0.8
1,137,759	-				-0.8
1,137,759	-				+0.2
1,137,759	-				-0.1
1,137,759	-				-0.0
1,137,759	-				-0.9
1,137,759	-				-1.8
1,137,759	-				-0.2
1,137,759	-				+0.3
1,137,759	-				+0.0
1,137,759	-				-1.2
1,137,759	-				+0.2
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1,137,759	-				-1.3
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1,137,759	-				-0.7
1,137,759	-				-2.0
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1,137,759	-				-1.0
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1,137,759	-				+0.5
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1,137,780	+				-1.6
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