Strain Fitness in Sphingobium sp. HT1-2 around GFF1119

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,120,701	+				-0.2
1,120,701	+				-0.4
1,120,701	+				-1.4
1,120,701	+				-1.9
1,120,701	+				+1.1
1,120,701	+				-1.1
1,120,701	+				-1.0
1,120,701	+				+0.2
1,120,704	-				+0.2
1,120,704	-				+0.2
1,120,706	+				-0.8
1,120,706	+				+0.9
1,120,706	+				+0.1
1,120,706	+				+0.2
1,120,706	+				+1.6
1,120,706	+				-0.1
1,120,706	+				+1.6
1,120,709	-				-0.0
1,120,709	-				-1.7
1,120,709	-				-0.8
1,120,709	-				+0.1
1,120,711	+				-0.8
1,120,714	-				-0.6
1,120,714	-				+1.4
1,120,714	-				-1.2
1,120,714	-				-0.2
1,120,714	-				-2.2
1,120,719	-				-0.4
1,120,719	-				-0.5
1,120,720	+				-1.1
1,120,726	+				-0.5
1,120,726	+				-1.7
1,120,734	-				-1.2
1,120,734	-				-0.1
1,120,734	-				+0.2
1,120,753	-				-0.6
1,120,781	+				-0.2
1,120,789	-				+0.5
1,120,791	-				+0.3
1,120,793	+				+1.2
1,120,819	+				-0.7
1,120,819	+				-1.6
1,120,819	+				-0.6
1,120,819	+				-0.9
1,120,819	+				-0.7
1,120,819	+				-0.2
1,120,819	+				-1.5
1,120,819	+				-2.1
1,120,820	+				+0.0
1,120,827	-				+0.8
1,120,827	-				+0.5
1,120,827	-				+1.1
1,120,827	-				+0.5
1,120,827	-				-0.5
1,120,827	-				-0.2
1,120,827	-				-1.1
1,120,828	-				-0.1
1,120,828	-				+0.6
1,120,828	-				-0.6
1,120,830	+				-0.4
1,120,838	-				-0.6
1,120,838	-				+0.2
1,120,838	-				+1.0
1,120,853	+		GFF1118	0.11	-2.0
1,120,868	+		GFF1118	0.12	-1.6
1,120,868	+		GFF1118	0.12	+0.2
1,120,906	+		GFF1118	0.16	-1.1
1,120,906	+		GFF1118	0.16	-1.4
1,120,906	+		GFF1118	0.16	-1.7
1,120,906	+		GFF1118	0.16	-1.1
1,120,906	+		GFF1118	0.16	+0.3
1,120,906	+		GFF1118	0.16	+0.3
1,120,906	+		GFF1118	0.16	-0.1
1,120,906	+		GFF1118	0.16	-0.2
1,120,906	+		GFF1118	0.16	+0.4
1,120,906	+		GFF1118	0.16	-1.0
1,120,906	+		GFF1118	0.16	-0.0
1,120,911	+		GFF1118	0.17	-1.6
1,120,914	-		GFF1118	0.17	-2.0
1,120,914	-		GFF1118	0.17	-1.1
1,120,914	-		GFF1118	0.17	-0.5
1,120,914	-		GFF1118	0.17	-1.2
1,120,914	-		GFF1118	0.17	+0.0
1,120,914	-		GFF1118	0.17	+1.0
1,120,914	-		GFF1118	0.17	+1.0
1,120,921	+		GFF1118	0.18	-0.8
1,120,922	+		GFF1118	0.18	-1.1
1,120,927	+		GFF1118	0.18	-1.7
1,120,930	+		GFF1118	0.19	+1.8
1,120,930	+		GFF1118	0.19	-0.7
1,120,930	+		GFF1118	0.19	-1.4
1,120,930	-		GFF1118	0.19	-0.8
1,120,940	+		GFF1118	0.20	-1.2
1,120,940	+		GFF1118	0.20	-0.8
1,120,943	+		GFF1118	0.20	-0.9
1,120,951	-		GFF1118	0.21	-0.6
1,120,952	+		GFF1118	0.21	-0.2
1,120,956	-		GFF1118	0.22	-0.9
1,120,963	+		GFF1118	0.22	-0.7
1,120,963	+		GFF1118	0.22	-0.8
1,120,963	+		GFF1118	0.22	-1.0
1,120,965	-		GFF1118	0.22	-0.2
1,120,971	-		GFF1118	0.23	-2.0
1,120,971	-		GFF1118	0.23	+0.1
1,120,974	+		GFF1118	0.23	-0.7
1,120,974	+		GFF1118	0.23	-1.1
1,120,992	-		GFF1118	0.25	-0.8
1,120,992	-		GFF1118	0.25	-0.5
1,121,086	-		GFF1118	0.35	-0.2
1,121,098	+		GFF1118	0.37	-1.4
1,121,113	-		GFF1118	0.38	-1.3
1,121,132	-		GFF1118	0.40	-0.6
1,121,155	+		GFF1118	0.43	+0.2
1,121,155	+		GFF1118	0.43	-0.5
1,121,159	-		GFF1118	0.43	+0.4
1,121,162	+		GFF1118	0.43	-1.0
1,121,169	+		GFF1118	0.44	-2.3
1,121,182	+		GFF1118	0.46	-0.9
1,121,184	+		GFF1118	0.46	+0.2
1,121,232	-		GFF1118	0.51	-1.7
1,121,233	-		GFF1118	0.51	-1.0
1,121,233	-		GFF1118	0.51	-0.3
1,121,240	+		GFF1118	0.52	-1.4
1,121,242	-		GFF1118	0.52	+0.3
1,121,246	+		GFF1118	0.52	-1.7
1,121,254	-		GFF1118	0.53	-0.6
1,121,258	+		GFF1118	0.54	+0.0
1,121,258	+		GFF1118	0.54	-0.8
1,121,281	-		GFF1118	0.56	-1.6
1,121,286	+		GFF1118	0.57	-0.3
1,121,286	+		GFF1118	0.57	+0.2
1,121,294	-		GFF1118	0.58	-1.0
1,121,295	-		GFF1118	0.58	-0.4
1,121,295	-		GFF1118	0.58	-0.3
1,121,303	+		GFF1118	0.58	-0.9
1,121,303	+		GFF1118	0.58	+0.2
1,121,311	-		GFF1118	0.59	-0.8
1,121,363	-		GFF1118	0.65	+0.1
1,121,372	+		GFF1118	0.66	+1.2
1,121,378	-		GFF1118	0.66	-0.4
1,121,378	-		GFF1118	0.66	-2.8
1,121,378	-		GFF1118	0.66	-1.7
1,121,378	-		GFF1118	0.66	-2.9
1,121,378	-		GFF1118	0.66	-1.4
1,121,397	-		GFF1118	0.68	+0.6
1,121,455	+		GFF1118	0.75	+0.1
1,121,466	+		GFF1118	0.76	-0.3
1,121,474	-		GFF1118	0.77	+0.2
1,121,476	+		GFF1118	0.77	-1.7
1,121,476	+		GFF1118	0.77	-0.5
1,121,511	+		GFF1118	0.81	+0.1
1,121,511	+		GFF1118	0.81	-0.3
1,121,518	-		GFF1118	0.81	+0.7
1,121,519	-		GFF1118	0.81	-1.4
1,121,519	-		GFF1118	0.81	+1.3
1,121,519	-		GFF1118	0.81	-1.7
1,121,532	-		GFF1118	0.83	-0.7
1,121,532	-		GFF1118	0.83	-0.2
1,121,532	-		GFF1118	0.83	-0.8
1,121,532	-		GFF1118	0.83	+0.0
1,121,532	-		GFF1118	0.83	+1.3
1,121,552	-		GFF1118	0.85	+1.5
1,121,559	-		GFF1118	0.86	-0.4
1,121,560	+		GFF1118	0.86	-0.8
1,121,560	+		GFF1118	0.86	-1.8
1,121,560	+		GFF1118	0.86	+0.6
1,121,560	-		GFF1118	0.86	+0.5
1,121,561	+		GFF1118	0.86	-0.0
1,121,568	-		GFF1118	0.87	-0.4
1,121,569	-		GFF1118	0.87	-0.4
1,121,569	-		GFF1118	0.87	-0.9
1,121,577	-		GFF1118	0.88	-0.2
1,121,614	+				-0.3
1,121,615	+				-0.3
1,121,622	-				-1.6
1,121,622	-				-1.6
1,121,623	-				-0.1
1,121,623	-				-0.7
1,121,630	+				+1.5
1,121,674	+				-0.5
1,121,682	+				-0.6
1,121,682	-				+0.3
1,121,695	-				-0.6
1,121,716	+				-2.0
1,121,716	+				-1.3
1,121,716	+				-0.7
1,121,724	-				-0.6
1,121,724	-				-1.7
1,121,726	+				-0.9
1,121,734	+				+0.4
1,121,734	+				-1.0
1,121,734	+				-0.5
1,121,742	-				+0.2
1,121,742	-				-0.8
1,121,742	-				-0.4
1,121,742	-				-1.6
1,121,742	-				-1.2
1,121,744	+				-0.7
1,121,750	+				-0.4
1,121,758	-				+1.3
1,121,760	+				-2.4
1,121,760	+				-1.7
1,121,760	+				+0.2
1,121,768	-				-1.2
1,121,768	-				-2.7
1,121,768	-				+0.2
1,121,768	-				-0.4
1,121,788	-				-0.7
1,121,796	+				-1.8
1,121,796	-				+0.7
1,121,798	+				+0.4
1,121,808	+				-0.9
1,121,808	-				-1.8
1,121,819	+		GFF1119	0.11	+1.0
1,121,819	+		GFF1119	0.11	-0.3
1,121,824	+		GFF1119	0.11	-0.5
1,121,827	-		GFF1119	0.12	+0.9
1,121,827	-		GFF1119	0.12	+1.5
1,121,827	-		GFF1119	0.12	+0.3
1,121,827	-		GFF1119	0.12	-0.6
1,121,827	-		GFF1119	0.12	+0.5
1,121,832	-		GFF1119	0.12	-2.3
1,121,915	+		GFF1119	0.19	-1.8
1,121,917	+		GFF1119	0.19	+0.0
1,121,923	-		GFF1119	0.20	-0.6
1,121,925	+		GFF1119	0.20	+0.3
1,121,925	+		GFF1119	0.20	-0.1
1,121,925	+		GFF1119	0.20	+0.5
1,121,925	+		GFF1119	0.20	-0.1
1,121,925	+		GFF1119	0.20	-1.8
1,121,925	+		GFF1119	0.20	-0.1
1,121,928	-		GFF1119	0.20	+0.3
1,121,932	+		GFF1119	0.20	+0.4
1,121,933	-		GFF1119	0.20	+0.4
1,121,933	-		GFF1119	0.20	-0.5
1,121,933	-		GFF1119	0.20	+1.7
1,121,933	-		GFF1119	0.20	+0.2
1,121,964	+		GFF1119	0.23	-0.6
1,121,978	-		GFF1119	0.24	-1.0
1,121,990	+		GFF1119	0.25	+0.3
1,121,990	+		GFF1119	0.25	-1.7
1,121,990	+		GFF1119	0.25	-0.1
1,121,990	+		GFF1119	0.25	-1.7
1,121,990	+		GFF1119	0.25	-1.5
1,121,998	-		GFF1119	0.26	-1.5
1,121,998	-		GFF1119	0.26	-0.3
1,121,998	-		GFF1119	0.26	-0.5
1,122,014	+		GFF1119	0.27	-0.5
1,122,016	+		GFF1119	0.27	-1.4
1,122,016	+		GFF1119	0.27	-1.4
1,122,016	+		GFF1119	0.27	-0.3
1,122,016	+		GFF1119	0.27	+0.5
1,122,016	+		GFF1119	0.27	+1.4
1,122,016	+		GFF1119	0.27	-0.2
1,122,016	+		GFF1119	0.27	+0.4
1,122,016	+		GFF1119	0.27	-1.2
1,122,021	+		GFF1119	0.28	-1.7
1,122,022	-		GFF1119	0.28	+0.6
1,122,022	-		GFF1119	0.28	-0.7
1,122,024	-		GFF1119	0.28	-0.2
1,122,024	-		GFF1119	0.28	+0.9
1,122,024	-		GFF1119	0.28	-1.4
1,122,024	-		GFF1119	0.28	-1.0
1,122,024	-		GFF1119	0.28	+0.5
1,122,024	-		GFF1119	0.28	-0.4
1,122,029	-		GFF1119	0.28	-0.5
1,122,029	-		GFF1119	0.28	+0.2
1,122,029	-		GFF1119	0.28	-0.3
1,122,042	+		GFF1119	0.29	-0.2
1,122,042	+		GFF1119	0.29	+1.2
1,122,079	-		GFF1119	0.33	-1.7
1,122,085	+		GFF1119	0.33	+0.4
1,122,085	+		GFF1119	0.33	-0.4
1,122,090	+		GFF1119	0.33	+0.2
1,122,118	+		GFF1119	0.36	-1.3
1,122,118	+		GFF1119	0.36	-1.7
1,122,118	+		GFF1119	0.36	+0.8
1,122,118	+		GFF1119	0.36	-1.2
1,122,118	+		GFF1119	0.36	-0.1
1,122,123	+		GFF1119	0.36	+2.1
1,122,123	+		GFF1119	0.36	+0.2
1,122,123	+		GFF1119	0.36	+0.6
1,122,126	-		GFF1119	0.36	-0.5
1,122,126	-		GFF1119	0.36	+0.2
1,122,126	-		GFF1119	0.36	-1.6
1,122,127	-		GFF1119	0.36	-1.9
1,122,127	-		GFF1119	0.36	-2.0
1,122,153	+		GFF1119	0.39	+0.8
1,122,153	+		GFF1119	0.39	-0.4
1,122,153	+		GFF1119	0.39	-0.7
1,122,153	+		GFF1119	0.39	-1.2
1,122,153	+		GFF1119	0.39	-1.5
1,122,153	+		GFF1119	0.39	-0.5
1,122,153	+		GFF1119	0.39	-0.9
1,122,153	+		GFF1119	0.39	-1.0
1,122,153	+		GFF1119	0.39	+1.5
1,122,161	-		GFF1119	0.39	-0.1
1,122,161	-		GFF1119	0.39	-0.5
1,122,161	-		GFF1119	0.39	-0.6
1,122,161	-		GFF1119	0.39	-1.0
1,122,161	-		GFF1119	0.39	-1.1
1,122,161	-		GFF1119	0.39	-1.0
1,122,161	-		GFF1119	0.39	-0.2
1,122,161	-		GFF1119	0.39	-0.8
1,122,161	-		GFF1119	0.39	-0.1
1,122,161	-		GFF1119	0.39	-1.5
1,122,161	-		GFF1119	0.39	-0.2
1,122,161	-		GFF1119	0.39	+0.8
1,122,161	-		GFF1119	0.39	-1.7
1,122,161	-		GFF1119	0.39	-1.7
1,122,161	-		GFF1119	0.39	+0.3
1,122,185	+		GFF1119	0.41	-0.8
1,122,201	+		GFF1119	0.43	+0.0
1,122,258	-		GFF1119	0.47	+0.8
1,122,264	-		GFF1119	0.48	-1.6
1,122,265	-		GFF1119	0.48	+0.2
1,122,270	-		GFF1119	0.48	-1.1
1,122,286	-		GFF1119	0.50	-1.9
1,122,286	-		GFF1119	0.50	+0.6
1,122,306	+		GFF1119	0.51	-1.2
1,122,321	-		GFF1119	0.53	+0.4
1,122,321	-		GFF1119	0.53	-0.4
1,122,332	+		GFF1119	0.54	+1.5
1,122,332	+		GFF1119	0.54	-0.9
1,122,337	+		GFF1119	0.54	+0.6
1,122,340	-		GFF1119	0.54	-0.2
1,122,340	-		GFF1119	0.54	-0.0
1,122,340	-		GFF1119	0.54	-1.8
1,122,344	+		GFF1119	0.55	-1.1
1,122,344	+		GFF1119	0.55	-2.0
1,122,344	+		GFF1119	0.55	-1.2
1,122,344	+		GFF1119	0.55	-0.9
1,122,344	+		GFF1119	0.55	-0.7
1,122,344	+		GFF1119	0.55	-0.4
1,122,345	-		GFF1119	0.55	-0.2
1,122,352	-		GFF1119	0.55	-0.1
1,122,352	-		GFF1119	0.55	-1.1
1,122,352	-		GFF1119	0.55	+0.5
1,122,352	-		GFF1119	0.55	-1.0
1,122,352	-		GFF1119	0.55	+1.5
1,122,360	+		GFF1119	0.56	-2.0
1,122,368	+		GFF1119	0.57	+0.2
1,122,392	-		GFF1119	0.59	-1.6
1,122,407	+		GFF1119	0.60	-1.5
1,122,407	+		GFF1119	0.60	+1.1
1,122,409	+		GFF1119	0.60	-0.5
1,122,423	+		GFF1119	0.61	+0.4
1,122,423	+		GFF1119	0.61	+0.9
1,122,423	+		GFF1119	0.61	-0.4
1,122,431	-		GFF1119	0.62	+0.9
1,122,431	-		GFF1119	0.62	-0.6
1,122,431	-		GFF1119	0.62	+0.0
1,122,451	-		GFF1119	0.64	-0.6
1,122,455	-		GFF1119	0.64	+0.7
1,122,456	-		GFF1119	0.64	+0.3
1,122,460	-		GFF1119	0.64	-0.5
1,122,483	+		GFF1119	0.66	-0.2
1,122,483	+		GFF1119	0.66	-0.8
1,122,490	+		GFF1119	0.67	+0.4
1,122,491	-		GFF1119	0.67	+0.4
1,122,493	-		GFF1119	0.67	+0.7
1,122,498	-		GFF1119	0.67	-0.2
1,122,498	-		GFF1119	0.67	-0.8
1,122,498	-		GFF1119	0.67	-0.6
1,122,498	-		GFF1119	0.67	-0.5
1,122,498	-		GFF1119	0.67	-1.8
1,122,498	-		GFF1119	0.67	+0.5
1,122,503	-		GFF1119	0.68	-0.1
1,122,504	+		GFF1119	0.68	-0.4
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1,122,538	+		GFF1119	0.71	-0.2
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1,122,546	-		GFF1119	0.71	-0.6
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1,122,571	+		GFF1119	0.73	+1.0
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1,122,576	+		GFF1119	0.74	-2.6
1,122,576	+		GFF1119	0.74	-1.8
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1,122,604	-		GFF1119	0.76	-1.3
1,122,604	-		GFF1119	0.76	+0.8
1,122,604	-		GFF1119	0.76	+0.1
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1,122,687	+		GFF1119	0.83	-2.3
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1,122,695	-		GFF1119	0.84	-1.3
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1,122,782	-				+2.0
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1,122,802	-				-1.8
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1,122,829	+				-0.5
1,122,843	+				+0.1
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1,122,862	+				-1.4
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1,122,869	+				-2.4
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1,122,890	+				+0.2
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1,122,897	+				-0.1
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1,122,902	+				-0.9
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1,122,903	+				-1.6
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1,122,905	-				+1.3
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1,122,911	-				+1.1
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