Strain Fitness in Sphingobium sp. HT1-2 around GFF1076

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,082,260	-		GFF1075	0.30	+0.3
1,082,277	-		GFF1075	0.31	+0.0
1,082,300	+		GFF1075	0.34	+0.8
1,082,324	+		GFF1075	0.36	+1.0
1,082,332	-		GFF1075	0.37	-1.2
1,082,345	-		GFF1075	0.38	+0.0
1,082,395	+		GFF1075	0.43	+0.8
1,082,403	-		GFF1075	0.44	+1.3
1,082,495	+		GFF1075	0.53	+2.3
1,082,585	-		GFF1075	0.61	+0.5
1,082,937	-				-0.5
1,082,985	-				-1.2
1,082,990	-				-0.8
1,083,145	+				+1.3
1,083,145	+				-1.0
1,083,153	-				-0.6
1,083,212	+				+0.5
1,083,253	+				+0.4
1,083,253	+				-0.3
1,083,253	+				+0.5
1,083,261	-				-0.9
1,083,261	-				-1.5
1,083,261	-				-0.3
1,083,261	-				-0.7
1,083,261	-				-0.1
1,083,328	+				+0.3
1,083,336	-		GFF1076	0.10	-1.3
1,083,337	-		GFF1076	0.10	+1.7
1,083,348	+		GFF1076	0.11	+0.5
1,083,375	+		GFF1076	0.12	+1.0
1,083,415	+		GFF1076	0.15	+1.3
1,083,423	+		GFF1076	0.15	-1.2
1,083,431	-		GFF1076	0.15	+0.0
1,083,431	-		GFF1076	0.15	+0.8
1,083,437	+		GFF1076	0.16	-1.3
1,083,445	-		GFF1076	0.16	+1.0
1,083,460	+		GFF1076	0.17	-1.3
1,083,460	+		GFF1076	0.17	-0.2
1,083,460	+		GFF1076	0.17	+1.3
1,083,460	+		GFF1076	0.17	-0.6
1,083,468	-		GFF1076	0.18	-0.6
1,083,468	-		GFF1076	0.18	+0.0
1,083,468	-		GFF1076	0.18	-0.9
1,083,527	+		GFF1076	0.21	+0.2
1,083,551	+		GFF1076	0.22	+2.2
1,083,551	+		GFF1076	0.22	-0.4
1,083,564	-		GFF1076	0.23	+0.1
1,083,581	-		GFF1076	0.24	+0.2
1,083,596	-		GFF1076	0.25	-1.3
1,083,604	-		GFF1076	0.25	-0.7
1,083,611	+		GFF1076	0.26	+0.0
1,083,621	+		GFF1076	0.26	+0.5
1,083,629	-		GFF1076	0.27	+0.6
1,083,665	+		GFF1076	0.29	-0.5
1,083,665	+		GFF1076	0.29	-0.2
1,083,665	+		GFF1076	0.29	-0.8
1,083,665	+		GFF1076	0.29	-0.1
1,083,666	+		GFF1076	0.29	+0.8
1,083,671	-		GFF1076	0.29	-0.7
1,083,673	-		GFF1076	0.29	-0.7
1,083,673	-		GFF1076	0.29	+0.6
1,083,673	-		GFF1076	0.29	+0.0
1,083,673	-		GFF1076	0.29	-0.8
1,083,673	-		GFF1076	0.29	-2.1
1,083,710	-		GFF1076	0.31	-0.2
1,083,721	+		GFF1076	0.32	-0.2
1,083,736	+		GFF1076	0.33	+0.5
1,083,741	+		GFF1076	0.33	-0.5
1,083,744	-		GFF1076	0.33	-1.0
1,083,744	-		GFF1076	0.33	-2.0
1,083,771	+		GFF1076	0.35	+1.0
1,083,791	-		GFF1076	0.36	-1.9
1,083,796	-		GFF1076	0.36	+0.5
1,083,825	+		GFF1076	0.38	-0.9
1,083,848	-		GFF1076	0.39	-0.7
1,083,848	-		GFF1076	0.39	-1.6
1,083,853	+		GFF1076	0.39	+1.2
1,083,870	+		GFF1076	0.40	+1.8
1,083,913	-		GFF1076	0.43	-0.2
1,083,926	-		GFF1076	0.43	+0.3
1,083,986	+		GFF1076	0.47	+0.6
1,083,994	-		GFF1076	0.47	+0.9
1,084,045	+		GFF1076	0.50	-1.9
1,084,045	+		GFF1076	0.50	+0.2
1,084,094	-		GFF1076	0.53	-1.4
1,084,130	+		GFF1076	0.55	+1.2
1,084,141	+		GFF1076	0.55	-0.2
1,084,174	+		GFF1076	0.57	+0.2
1,084,178	+		GFF1076	0.57	+1.5
1,084,180	+		GFF1076	0.58	-1.6
1,084,186	-		GFF1076	0.58	+1.3
1,084,191	-		GFF1076	0.58	-1.5
1,084,226	-		GFF1076	0.60	+0.5
1,084,237	-		GFF1076	0.61	+1.0
1,084,254	+		GFF1076	0.62	+1.1
1,084,263	+		GFF1076	0.62	-1.2
1,084,264	+		GFF1076	0.62	+1.3
1,084,264	+		GFF1076	0.62	-0.4
1,084,264	+		GFF1076	0.62	+0.1
1,084,264	+		GFF1076	0.62	+1.6
1,084,264	+		GFF1076	0.62	-1.6
1,084,264	+		GFF1076	0.62	-0.6
1,084,264	+		GFF1076	0.62	+0.2
1,084,264	+		GFF1076	0.62	-0.8
1,084,264	+		GFF1076	0.62	-0.4
1,084,264	+		GFF1076	0.62	-1.7
1,084,272	-		GFF1076	0.63	+0.2
1,084,272	-		GFF1076	0.63	-2.0
1,084,272	-		GFF1076	0.63	+0.8
1,084,272	-		GFF1076	0.63	+0.6
1,084,272	-		GFF1076	0.63	-0.2
1,084,272	-		GFF1076	0.63	-1.1
1,084,272	-		GFF1076	0.63	-1.2
1,084,272	-		GFF1076	0.63	+1.0
1,084,272	-		GFF1076	0.63	-0.0
1,084,305	-		GFF1076	0.65	+0.5
1,084,336	-		GFF1076	0.66	-0.6
1,084,336	-		GFF1076	0.66	+0.8
1,084,344	+		GFF1076	0.67	+2.3
1,084,344	+		GFF1076	0.67	+0.7
1,084,344	+		GFF1076	0.67	-1.1
1,084,352	-		GFF1076	0.67	-0.6
1,084,354	+		GFF1076	0.67	-1.9
1,084,361	+		GFF1076	0.68	+0.8
1,084,425	-		GFF1076	0.71	+2.0
1,084,425	-		GFF1076	0.71	-0.2
1,084,451	+		GFF1076	0.73	+1.3
1,084,457	-		GFF1076	0.73	+0.0
1,084,459	-		GFF1076	0.73	-0.2
1,084,466	+		GFF1076	0.74	-0.6
1,084,466	+		GFF1076	0.74	+1.0
1,084,474	+		GFF1076	0.74	-2.0
1,084,474	-		GFF1076	0.74	+1.2
1,084,480	+		GFF1076	0.74	+0.3
1,084,482	-		GFF1076	0.75	+0.4
1,084,533	+		GFF1076	0.77	+0.3
1,084,541	-		GFF1076	0.78	-0.9
1,084,586	-		GFF1076	0.80	+0.4
1,084,630	-		GFF1076	0.83	+0.5
1,084,644	+		GFF1076	0.84	-0.6
1,084,644	+		GFF1076	0.84	-1.1
1,084,726	+		GFF1076	0.88	-0.8
1,084,741	+		GFF1076	0.89	+1.6
1,084,749	+		GFF1076	0.90	+1.4
1,084,761	+				+0.1
1,084,777	+				-1.1
1,084,787	+				-0.7
1,084,920	+				-0.1
1,084,922	+				-1.1
1,084,922	+				-0.3
1,084,928	-				-0.4
1,084,928	-				+1.5
1,084,929	+				+1.2
1,084,929	+				-1.9
1,084,929	+				+0.5
1,084,929	+				-0.3
1,084,929	+				-0.6
1,084,929	+				+1.0
1,084,929	+				-0.5
1,084,929	+				+0.8
1,084,929	+				+1.4
1,084,929	+				+0.1
1,084,929	+				+0.8
1,084,937	-				-0.2
1,084,937	-				-0.6
1,084,937	-				-0.9
1,084,937	-				+0.5
1,084,937	-				-1.2
1,084,948	+				+1.4
1,084,948	+				-0.2
1,085,025	-		GFF1077	0.18	+0.6
1,085,025	-		GFF1077	0.18	+0.0
1,085,025	-		GFF1077	0.18	-0.2
1,085,030	-		GFF1077	0.20	-0.4
1,085,032	+		GFF1077	0.20	-1.2
1,085,040	-		GFF1077	0.22	-0.9
1,085,047	-		GFF1077	0.24	+0.8
1,085,047	-		GFF1077	0.24	+1.2
1,085,055	+		GFF1077	0.26	-1.2
1,085,090	+		GFF1077	0.35	+0.7
1,085,095	+		GFF1077	0.36	-0.2
1,085,095	+		GFF1077	0.36	-1.3
1,085,129	-		GFF1077	0.44	-0.8
1,085,139	+		GFF1077	0.47	+0.9
1,085,145	+		GFF1077	0.48	-0.9
1,085,147	-		GFF1077	0.49	-0.6
1,085,150	+		GFF1077	0.50	+1.4
1,085,150	+		GFF1077	0.50	+0.8
1,085,150	+		GFF1077	0.50	-0.1
1,085,150	+		GFF1077	0.50	+0.2
1,085,150	+		GFF1077	0.50	-0.2
1,085,153	+		GFF1077	0.50	+0.6
1,085,153	+		GFF1077	0.50	-0.9
1,085,153	+		GFF1077	0.50	-0.2
1,085,153	+		GFF1077	0.50	-1.3
1,085,153	-		GFF1077	0.50	+1.5
1,085,155	+		GFF1077	0.51	-1.3
1,085,155	+		GFF1077	0.51	-1.0
1,085,158	-		GFF1077	0.51	-0.6
1,085,158	-		GFF1077	0.51	-0.9
1,085,158	-		GFF1077	0.51	-0.3
1,085,161	-		GFF1077	0.52	+1.5
1,085,161	-		GFF1077	0.52	-0.6
1,085,163	-		GFF1077	0.53	+2.8
1,085,163	-		GFF1077	0.53	+1.4
1,085,163	-		GFF1077	0.53	+0.8
1,085,163	-		GFF1077	0.53	+0.0
1,085,171	+		GFF1077	0.55	-0.7
1,085,182	+		GFF1077	0.57	-0.6
1,085,220	+		GFF1077	0.67	-0.5
1,085,236	-		GFF1077	0.71	+1.8
1,085,236	-		GFF1077	0.71	-0.4
1,085,240	-		GFF1077	0.72	+0.6
1,085,250	-		GFF1077	0.74	-1.6
1,085,292	+		GFF1077	0.85	-1.2
1,085,300	+		GFF1077	0.87	-0.5
1,085,300	-		GFF1077	0.87	+0.4
1,085,328	+				-1.1
1,085,334	+				-0.7
1,085,336	-				+1.4
1,085,342	-				+2.8
1,085,360	+				-1.3
1,085,360	-				+2.8
1,085,370	-				+2.8
1,085,407	+				+2.4
1,085,415	-				+1.1
1,085,469	-				-0.5
1,085,478	+				+1.0
1,085,491	+				+1.0
1,085,512	+		GFF1078	0.13	-0.6
1,085,520	-		GFF1078	0.14	+0.1
1,085,522	-		GFF1078	0.14	+1.0
1,085,563	+		GFF1078	0.20	+2.2
1,085,568	+		GFF1078	0.20	-0.1
1,085,568	+		GFF1078	0.20	-1.5
1,085,568	+		GFF1078	0.20	+0.3
1,085,576	-		GFF1078	0.21	+0.2
1,085,576	-		GFF1078	0.21	+2.7
1,085,576	-		GFF1078	0.21	+0.1
1,085,581	+		GFF1078	0.22	+1.5
1,085,589	-		GFF1078	0.23	+1.5
1,085,589	-		GFF1078	0.23	-1.0
1,085,589	-		GFF1078	0.23	+0.9
1,085,589	-		GFF1078	0.23	+1.0
1,085,599	-		GFF1078	0.25	+1.9
1,085,611	-		GFF1078	0.26	-0.6
1,085,627	-		GFF1078	0.28	-1.8
1,085,628	+		GFF1078	0.29	-0.1
1,085,628	+		GFF1078	0.29	+1.0
1,085,630	+		GFF1078	0.29	+0.4
1,085,643	+		GFF1078	0.31	+0.0
1,085,671	+		GFF1078	0.35	+0.5
1,085,677	+		GFF1078	0.35	-0.8
1,085,685	-		GFF1078	0.37	-0.2
1,085,694	+		GFF1078	0.38	-0.4
1,085,694	+		GFF1078	0.38	+0.4
1,085,694	+		GFF1078	0.38	+1.4
1,085,694	+		GFF1078	0.38	+1.4
1,085,694	+		GFF1078	0.38	-0.8
1,085,694	+		GFF1078	0.38	+1.0
1,085,702	-		GFF1078	0.39	-0.2
1,085,702	-		GFF1078	0.39	-0.0
1,085,702	-		GFF1078	0.39	+0.9
1,085,702	-		GFF1078	0.39	+0.3
1,085,702	-		GFF1078	0.39	-0.2
1,085,702	-		GFF1078	0.39	-0.5
1,085,702	-		GFF1078	0.39	+0.5
1,085,702	-		GFF1078	0.39	+0.4
1,085,710	+		GFF1078	0.40	+0.1
1,085,710	+		GFF1078	0.40	-0.5
1,085,732	-		GFF1078	0.43	+1.8
1,085,745	+		GFF1078	0.45	-0.3
1,085,788	-		GFF1078	0.51	-1.4
1,085,829	+		GFF1078	0.56	-1.0
1,085,837	-		GFF1078	0.58	-0.3
1,085,882	-		GFF1078	0.64	+0.7
1,085,884	-		GFF1078	0.64	-0.6