Strain Fitness in Sphingobium sp. HT1-2 around GFF1041

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,044,075	-				+1.2
1,044,075	-				+1.3
1,044,075	-				+1.3
1,044,077	+				+0.6
1,044,077	+				-0.6
1,044,077	+				+0.8
1,044,077	+				+0.9
1,044,080	-				+1.0
1,044,085	-				-1.1
1,044,085	-				+0.5
1,044,093	+				+1.0
1,044,108	+				-0.2
1,044,108	+				-1.0
1,044,108	+				+0.2
1,044,108	+				-0.9
1,044,116	-				-1.7
1,044,116	-				-0.8
1,044,120	-				-0.1
1,044,139	+				-0.1
1,044,139	+				+0.0
1,044,139	+				+0.3
1,044,139	+				+1.0
1,044,142	-				+0.3
1,044,147	-				-0.6
1,044,147	-				-1.5
1,044,154	+				+0.1
1,044,167	-				+0.3
1,044,167	-				+0.1
1,044,169	+				-0.2
1,044,169	+				+0.9
1,044,177	-				+1.0
1,044,177	-				-0.9
1,044,177	-				+0.2
1,044,189	-				-0.9
1,044,204	+				-0.8
1,044,212	-				+0.9
1,044,233	-				-1.2
1,044,258	-				-0.8
1,044,258	-				-1.1
1,044,282	-				-0.6
1,044,307	-		GFF1040	0.12	-1.1
1,044,318	-		GFF1040	0.13	+1.0
1,044,318	-		GFF1040	0.13	+1.1
1,044,319	+		GFF1040	0.13	+1.7
1,044,439	-		GFF1040	0.30	+0.7
1,044,444	-		GFF1040	0.30	-1.2
1,044,451	+		GFF1040	0.31	+0.4
1,044,459	-		GFF1040	0.33	-1.1
1,044,459	-		GFF1040	0.33	-0.8
1,044,466	+		GFF1040	0.33	-1.7
1,044,469	-		GFF1040	0.34	-1.0
1,044,470	-		GFF1040	0.34	+0.1
1,044,474	-		GFF1040	0.35	+0.4
1,044,498	+		GFF1040	0.38	-0.6
1,044,515	+		GFF1040	0.40	+0.2
1,044,563	+		GFF1040	0.47	+1.2
1,044,566	-		GFF1040	0.47	+1.5
1,044,566	-		GFF1040	0.47	+0.7
1,044,571	-		GFF1040	0.48	-0.5
1,044,580	+		GFF1040	0.49	-0.6
1,044,583	-		GFF1040	0.49	-1.6
1,044,616	+		GFF1040	0.54	-0.9
1,044,744	+		GFF1040	0.71	-0.1
1,044,744	+		GFF1040	0.71	+1.7
1,044,752	-		GFF1040	0.73	+0.9
1,044,762	-		GFF1040	0.74	+0.2
1,044,762	-		GFF1040	0.74	+0.2
1,044,801	-		GFF1040	0.79	-1.2
1,044,833	+		GFF1040	0.84	-0.7
1,044,834	-		GFF1040	0.84	+2.2
1,044,835	-		GFF1040	0.84	+1.3
1,044,848	+		GFF1040	0.86	+0.1
1,044,848	+		GFF1040	0.86	-1.4
1,044,848	+		GFF1040	0.86	-0.9
1,044,848	+		GFF1040	0.86	-0.9
1,044,876	+		GFF1040	0.89	+0.4
1,044,876	+		GFF1040	0.89	-0.3
1,044,916	-				-1.0
1,044,949	-				-0.6
1,044,949	-				-0.2
1,044,956	-				-0.8
1,044,983	-				+1.5
1,044,986	-				-0.8
1,045,034	+				+0.1
1,045,039	+				+0.8
1,045,191	+				+0.6
1,045,200	-				+0.9
1,045,238	-				+1.1
1,045,282	-				+0.9
1,045,288	+				+0.3
1,045,303	-				-1.8
1,045,311	+				+1.3
1,045,324	-				-0.8
1,045,347	-				-0.6
1,045,347	-				+0.5
1,045,347	-				-0.4
1,045,373	+		GFF1041	0.10	+0.7
1,045,381	-		GFF1041	0.10	-0.5
1,045,381	-		GFF1041	0.10	-0.3
1,045,386	-		GFF1041	0.11	-0.3
1,045,393	+		GFF1041	0.11	-1.5
1,045,393	+		GFF1041	0.11	-0.0
1,045,393	+		GFF1041	0.11	-0.8
1,045,393	+		GFF1041	0.11	+0.0
1,045,401	-		GFF1041	0.11	+0.3
1,045,406	-		GFF1041	0.11	-1.6
1,045,438	+		GFF1041	0.12	+1.2
1,045,438	+		GFF1041	0.12	+1.0
1,045,438	+		GFF1041	0.12	+0.7
1,045,444	-		GFF1041	0.13	+0.7
1,045,446	-		GFF1041	0.13	-0.6
1,045,458	-		GFF1041	0.13	-1.9
1,045,475	-		GFF1041	0.14	+0.8
1,045,480	-		GFF1041	0.14	+0.1
1,045,495	+		GFF1041	0.14	+0.1
1,045,495	+		GFF1041	0.14	-1.1
1,045,495	+		GFF1041	0.14	-0.1
1,045,503	-		GFF1041	0.15	-1.8
1,045,503	-		GFF1041	0.15	+0.8
1,045,568	+		GFF1041	0.17	+0.1
1,045,596	-		GFF1041	0.18	+0.6
1,045,646	+		GFF1041	0.19	-0.2
1,045,646	+		GFF1041	0.19	-1.1
1,045,659	-		GFF1041	0.20	+1.1
1,045,659	-		GFF1041	0.20	-1.4
1,045,664	-		GFF1041	0.20	+1.0
1,045,684	+		GFF1041	0.21	-0.4
1,045,692	-		GFF1041	0.21	+1.2
1,045,848	+		GFF1041	0.26	-1.5
1,045,941	+		GFF1041	0.29	+0.4
1,045,949	-		GFF1041	0.30	+0.4
1,046,006	+		GFF1041	0.31	+1.0
1,046,006	-		GFF1041	0.31	-0.3
1,046,016	+		GFF1041	0.32	+0.2
1,046,048	-		GFF1041	0.33	-0.5
1,046,059	+		GFF1041	0.33	-0.3
1,046,065	-		GFF1041	0.33	+0.2
1,046,068	+		GFF1041	0.34	-0.6
1,046,077	-		GFF1041	0.34	+0.8
1,046,095	+		GFF1041	0.34	+0.9
1,046,095	+		GFF1041	0.34	-0.9
1,046,103	-		GFF1041	0.35	+0.1
1,046,114	+		GFF1041	0.35	+0.5
1,046,114	+		GFF1041	0.35	+1.6
1,046,114	+		GFF1041	0.35	-1.6
1,046,122	-		GFF1041	0.35	+0.3
1,046,122	-		GFF1041	0.35	-0.1
1,046,122	-		GFF1041	0.35	+0.2
1,046,122	-		GFF1041	0.35	+0.7
1,046,144	+		GFF1041	0.36	-0.3
1,046,157	-		GFF1041	0.37	+0.2
1,046,200	+		GFF1041	0.38	+0.2
1,046,213	+		GFF1041	0.38	-0.3
1,046,223	+		GFF1041	0.39	-0.1
1,046,223	+		GFF1041	0.39	+0.8
1,046,277	+		GFF1041	0.41	-1.7
1,046,370	+		GFF1041	0.44	-0.1
1,046,378	+		GFF1041	0.44	+2.0
1,046,378	-		GFF1041	0.44	-1.7
1,046,388	+		GFF1041	0.44	+0.0
1,046,433	+		GFF1041	0.46	+0.0
1,046,468	-		GFF1041	0.47	+0.5
1,046,555	+		GFF1041	0.50	-1.2
1,046,567	+		GFF1041	0.50	+0.5
1,046,573	+		GFF1041	0.51	-0.4
1,046,575	-		GFF1041	0.51	+1.1
1,046,733	+		GFF1041	0.56	-0.9
1,046,738	+		GFF1041	0.56	+1.5
1,046,738	+		GFF1041	0.56	+0.1
1,046,738	+		GFF1041	0.56	-1.3
1,046,738	+		GFF1041	0.56	-0.7
1,046,743	+		GFF1041	0.56	+0.7
1,046,746	-		GFF1041	0.56	+0.3
1,046,747	-		GFF1041	0.56	+0.5
1,046,754	+		GFF1041	0.57	+0.3
1,046,811	-		GFF1041	0.59	-0.2
1,046,826	+		GFF1041	0.59	-0.0
1,046,826	+		GFF1041	0.59	-1.3
1,046,834	-		GFF1041	0.59	-0.4
1,046,872	-		GFF1041	0.61	-0.4
1,046,890	-		GFF1041	0.61	+0.3
1,046,903	-		GFF1041	0.62	-0.3
1,046,914	-		GFF1041	0.62	+2.1
1,046,925	+		GFF1041	0.62	-0.8
1,046,959	+		GFF1041	0.64	-0.1
1,046,977	-		GFF1041	0.64	-0.4
1,046,998	+		GFF1041	0.65	+0.5
1,047,028	+		GFF1041	0.66	+0.4
1,047,035	+		GFF1041	0.66	+0.3
1,047,058	+		GFF1041	0.67	-0.4
1,047,093	-		GFF1041	0.68	+0.4
1,047,099	+		GFF1041	0.68	+0.7
1,047,101	+		GFF1041	0.68	-0.9
1,047,102	-		GFF1041	0.68	+0.3
1,047,107	+		GFF1041	0.68	-0.6
1,047,108	+		GFF1041	0.69	-0.5
1,047,109	-		GFF1041	0.69	+1.0
1,047,124	+		GFF1041	0.69	-0.2
1,047,142	-		GFF1041	0.70	-0.3
1,047,144	+		GFF1041	0.70	-0.5
1,047,161	-		GFF1041	0.70	+0.3
1,047,161	-		GFF1041	0.70	+0.2
1,047,161	-		GFF1041	0.70	+0.6
1,047,166	-		GFF1041	0.70	-0.6
1,047,223	+		GFF1041	0.72	-0.6
1,047,231	-		GFF1041	0.73	-0.3
1,047,301	-		GFF1041	0.75	+0.3
1,047,310	+		GFF1041	0.75	+0.0
1,047,318	-		GFF1041	0.76	-2.5
1,047,318	-		GFF1041	0.76	+1.0
1,047,318	-		GFF1041	0.76	+0.2
1,047,318	-		GFF1041	0.76	+0.2
1,047,322	+		GFF1041	0.76	-0.5
1,047,330	-		GFF1041	0.76	+0.7
1,047,330	-		GFF1041	0.76	+0.4
1,047,330	-		GFF1041	0.76	-1.0
1,047,330	-		GFF1041	0.76	+0.6
1,047,342	-		GFF1041	0.76	+2.0
1,047,378	-		GFF1041	0.78	-1.4
1,047,408	+		GFF1041	0.79	-1.2
1,047,408	+		GFF1041	0.79	-1.6
1,047,416	-		GFF1041	0.79	-0.1
1,047,432	+		GFF1041	0.79	+0.3
1,047,440	-		GFF1041	0.80	-0.0
1,047,470	+		GFF1041	0.81	+0.2
1,047,478	+		GFF1041	0.81	-0.6
1,047,478	-		GFF1041	0.81	-1.0
1,047,486	-		GFF1041	0.81	-0.6
1,047,486	-		GFF1041	0.81	-0.1
1,047,486	-		GFF1041	0.81	-1.0
1,047,503	+		GFF1041	0.82	-2.1
1,047,509	+		GFF1041	0.82	-0.8
1,047,559	+		GFF1041	0.84	-0.0
1,047,569	+		GFF1041	0.84	+0.2
1,047,577	-		GFF1041	0.84	-0.1
1,047,610	-		GFF1041	0.85	+3.3
1,047,665	+		GFF1041	0.87	+2.9
1,047,673	+		GFF1041	0.88	+0.2
1,047,681	+		GFF1041	0.88	+1.4
1,047,689	-		GFF1041	0.88	+0.2
1,047,689	-		GFF1041	0.88	+0.2
1,047,691	-		GFF1041	0.88	+0.7
1,047,715	+		GFF1041	0.89	+0.6
1,047,755	+				+0.7
1,047,763	-				-1.5
1,047,765	+				-1.0
1,047,765	+				-0.2
1,047,768	-				-0.7
1,047,773	-				-0.8
1,047,802	+				+0.0
1,047,805	-				+1.9
1,047,844	+				-1.8
1,047,854	-				+0.2
1,047,869	-				+0.1
1,047,894	-				-1.3
1,047,899	-				+0.9
1,047,909	-				+0.0
1,047,934	+				+0.7
1,047,944	+				+1.3
1,047,944	+				-0.8
1,047,944	+				-0.6
1,047,952	-				+1.3
1,047,952	-				-1.1
1,047,952	-				+0.2
1,047,952	-				-2.1
1,047,952	-				+1.4
1,047,952	-				-0.0
1,047,956	+				+0.3
1,047,956	+				+1.4
1,047,957	-				-0.4
1,047,957	-				-1.3
1,047,957	-				+0.4
1,047,964	-				+0.5
1,047,964	-				+0.7
1,047,964	-				-0.1
1,047,968	+				+1.3
1,047,968	+				-1.5
1,047,968	+				+1.0
1,047,968	+				-0.3
1,047,968	+				+0.2
1,047,968	+				+0.3
1,047,968	+				-1.1
1,047,968	+				-1.2
1,047,976	-				-0.8
1,047,976	-				+1.7
1,047,976	-				+0.7
1,047,976	-				+0.7
1,047,976	-				+0.5
1,047,976	-				+0.3
1,047,976	-				+0.7
1,048,020	-				-1.8
1,048,026	-				+0.7
1,048,056	+				+0.0
1,048,085	+				-0.3
1,048,085	+				+1.1
1,048,085	+				-0.1
1,048,085	+				+0.6
1,048,093	+				-0.6
1,048,093	-				-0.5
1,048,093	-				-1.0
1,048,093	-				+0.0
1,048,093	-				+0.7
1,048,093	-				-0.9
1,048,095	+				+0.7
1,048,095	+				+0.0
1,048,095	+				+0.7
1,048,095	+				+0.6
1,048,103	-				-1.5
1,048,118	-				+0.3
1,048,136	+				+0.0
1,048,136	+				-0.3
1,048,144	-				+0.1
1,048,221	+		GFF1042	0.46	-0.7
1,048,412	-				+0.3
1,048,429	-				-0.1
1,048,440	+				-2.2
1,048,440	+				-0.3
1,048,466	+				+0.2
1,048,490	+		GFF1043	0.16	-0.6
1,048,496	-		GFF1043	0.18	+1.7
1,048,528	+		GFF1043	0.30	+1.0
1,048,585	+		GFF1043	0.49	-1.6
1,048,585	+		GFF1043	0.49	+0.1
1,048,593	-		GFF1043	0.52	+1.0
1,048,595	+		GFF1043	0.53	+1.0
1,048,603	-		GFF1043	0.56	-0.8
1,048,603	-		GFF1043	0.56	+0.5
1,048,603	-		GFF1043	0.56	+2.1
1,048,644	+		GFF1043	0.70	-0.8
1,048,688	+		GFF1043	0.85	-0.5
1,048,725	+				-1.2
1,048,769	-				+1.6
1,048,846	+				+0.6
1,048,865	+				-1.5
1,048,886	-				-2.4
1,048,911	+				+0.8
1,048,914	-				-1.1
1,048,919	-				-1.2
1,048,919	-				-0.7
1,048,919	-				+0.7
1,048,919	-				+0.8
1,048,919	-				-1.0
1,048,919	-				+0.5
1,048,921	+				-0.4
1,048,962	+				-1.0
1,048,993	+		GFF1044	0.12	-0.7
1,049,001	-		GFF1044	0.12	-0.3
1,049,003	+		GFF1044	0.12	-0.8
1,049,003	+		GFF1044	0.12	-0.8
1,049,003	+		GFF1044	0.12	-1.8
1,049,003	+		GFF1044	0.12	+2.3