Strain Fitness in Sphingobium sp. HT1-2 around GFF1033

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,032,843	-		GFF1031	0.14	-0.5
1,032,843	-		GFF1031	0.14	+0.6
1,032,845	+		GFF1031	0.15	+0.6
1,032,845	+		GFF1031	0.15	+0.3
1,032,845	+		GFF1031	0.15	-0.9
1,032,845	+		GFF1031	0.15	+0.3
1,032,845	+		GFF1031	0.15	-0.4
1,032,853	-		GFF1031	0.15	+0.7
1,032,853	-		GFF1031	0.15	+1.1
1,032,853	-		GFF1031	0.15	-0.1
1,032,853	-		GFF1031	0.15	-1.4
1,032,853	-		GFF1031	0.15	+0.6
1,032,853	-		GFF1031	0.15	-0.4
1,032,853	-		GFF1031	0.15	+0.1
1,032,853	-		GFF1031	0.15	-0.1
1,032,853	-		GFF1031	0.15	-0.3
1,032,853	-		GFF1031	0.15	-1.7
1,032,865	-		GFF1031	0.17	-0.3
1,032,871	+		GFF1031	0.17	+0.1
1,032,872	+		GFF1031	0.17	-1.1
1,032,877	+		GFF1031	0.18	-1.2
1,032,877	+		GFF1031	0.18	-0.5
1,032,882	+		GFF1031	0.19	-0.4
1,032,883	+		GFF1031	0.19	-0.7
1,032,885	-		GFF1031	0.19	-0.4
1,032,885	-		GFF1031	0.19	+0.8
1,032,890	-		GFF1031	0.19	-0.5
1,032,936	+		GFF1031	0.25	+0.2
1,032,937	+		GFF1031	0.25	+1.3
1,032,943	+		GFF1031	0.25	+0.1
1,032,944	-		GFF1031	0.25	-0.8
1,032,944	-		GFF1031	0.25	+1.9
1,032,944	-		GFF1031	0.25	+0.3
1,032,944	-		GFF1031	0.25	+1.3
1,032,971	-		GFF1031	0.28	+1.3
1,032,976	-		GFF1031	0.29	+0.2
1,032,977	+		GFF1031	0.29	+0.5
1,033,008	-		GFF1031	0.33	-0.8
1,033,013	-		GFF1031	0.33	-1.4
1,033,013	-		GFF1031	0.33	+0.6
1,033,013	-		GFF1031	0.33	-1.6
1,033,013	-		GFF1031	0.33	-2.0
1,033,016	+		GFF1031	0.33	-1.2
1,033,030	+		GFF1031	0.35	-0.7
1,033,037	+		GFF1031	0.36	+0.6
1,033,049	+		GFF1031	0.37	+1.1
1,033,067	+		GFF1031	0.39	-1.1
1,033,094	+		GFF1031	0.42	-1.1
1,033,114	-		GFF1031	0.44	-0.4
1,033,114	-		GFF1031	0.44	+0.1
1,033,120	-		GFF1031	0.45	+0.2
1,033,122	+		GFF1031	0.45	+0.5
1,033,132	+		GFF1031	0.46	-0.3
1,033,140	-		GFF1031	0.47	-0.8
1,033,144	+		GFF1031	0.48	-0.5
1,033,144	+		GFF1031	0.48	-2.5
1,033,159	+		GFF1031	0.49	+0.4
1,033,167	+		GFF1031	0.50	-1.2
1,033,167	+		GFF1031	0.50	-0.7
1,033,167	+		GFF1031	0.50	+1.1
1,033,167	+		GFF1031	0.50	+0.5
1,033,175	-		GFF1031	0.51	+0.4
1,033,192	+		GFF1031	0.53	-1.5
1,033,213	+		GFF1031	0.55	-0.5
1,033,228	-		GFF1031	0.57	-1.1
1,033,237	+		GFF1031	0.58	-1.3
1,033,252	-		GFF1031	0.60	+0.5
1,033,267	+		GFF1031	0.61	-1.0
1,033,270	-		GFF1031	0.62	-0.1
1,033,275	-		GFF1031	0.62	-0.3
1,033,300	+		GFF1031	0.65	-1.8
1,033,310	+		GFF1031	0.66	-0.2
1,033,310	+		GFF1031	0.66	+1.2
1,033,312	-		GFF1031	0.66	-2.4
1,033,315	+		GFF1031	0.67	-2.4
1,033,320	+		GFF1031	0.67	-1.1
1,033,360	-		GFF1031	0.72	-1.5
1,033,413	-		GFF1031	0.77	+0.5
1,033,413	-		GFF1031	0.77	+0.3
1,033,420	+		GFF1031	0.78	+1.6
1,033,503	+		GFF1031	0.87	-0.8
1,033,504	+		GFF1031	0.87	-1.1
1,033,505	+		GFF1031	0.88	-1.0
1,033,511	-		GFF1031	0.88	+0.6
1,033,511	-		GFF1031	0.88	+1.1
1,033,533	+				-1.4
1,033,575	+				-0.9
1,033,611	-				+0.0
1,033,641	+		GFF1032	0.13	-0.3
1,033,641	+		GFF1032	0.13	-0.8
1,033,651	+		GFF1032	0.18	-0.7
1,033,654	+		GFF1032	0.19	+0.1
1,033,654	-		GFF1032	0.19	-1.3
1,033,654	-		GFF1032	0.19	-0.4
1,033,660	-		GFF1032	0.22	+1.5
1,033,661	-		GFF1032	0.22	-0.2
1,033,665	+		GFF1032	0.24	+0.1
1,033,671	+		GFF1032	0.27	+0.6
1,033,675	+		GFF1032	0.29	-1.0
1,033,675	+		GFF1032	0.29	-0.6
1,033,675	+		GFF1032	0.29	-0.8
1,033,675	+		GFF1032	0.29	-1.5
1,033,675	+		GFF1032	0.29	-0.8
1,033,675	+		GFF1032	0.29	-1.0
1,033,675	+		GFF1032	0.29	-0.8
1,033,675	+		GFF1032	0.29	-0.8
1,033,679	-		GFF1032	0.31	-0.4
1,033,681	+		GFF1032	0.31	+0.5
1,033,683	-		GFF1032	0.32	-0.3
1,033,690	+		GFF1032	0.36	-0.1
1,033,715	-		GFF1032	0.47	+0.4
1,033,744	+		GFF1032	0.61	-0.8
1,033,744	+		GFF1032	0.61	-0.3
1,033,744	+		GFF1032	0.61	+0.1
1,033,752	+		GFF1032	0.64	-1.0
1,033,752	+		GFF1032	0.64	-0.7
1,033,752	+		GFF1032	0.64	+0.5
1,033,760	-		GFF1032	0.68	+0.5
1,033,786	-		GFF1032	0.80	-2.0
1,033,791	-		GFF1032	0.82	-0.1
1,033,791	-		GFF1032	0.82	+0.5
1,033,799	-		GFF1032	0.86	-1.0
1,033,799	-		GFF1032	0.86	-1.6
1,033,836	-				-2.4
1,033,840	+				+1.2
1,033,857	+				-1.5
1,033,858	+				-0.3
1,033,859	-				+0.1
1,033,859	-				-0.8
1,033,861	-				-1.7
1,033,861	-				+0.2
1,033,910	+				-0.4
1,033,910	+				-0.1
1,033,918	-				-0.9
1,033,918	-				-0.9
1,033,958	-				+0.9
1,033,992	-				-1.3
1,033,999	-				+0.2
1,034,001	+				-1.7
1,034,009	-				+0.5
1,034,009	-				-0.3
1,034,062	+		GFF1033	0.11	-1.1
1,034,070	-		GFF1033	0.12	-1.0
1,034,070	-		GFF1033	0.12	-1.4
1,034,074	+		GFF1033	0.12	-0.8
1,034,075	-		GFF1033	0.12	+1.7
1,034,082	-		GFF1033	0.12	-0.6
1,034,098	+		GFF1033	0.13	+0.6
1,034,106	-		GFF1033	0.13	-0.5
1,034,108	+		GFF1033	0.13	+0.6
1,034,134	+		GFF1033	0.15	-1.3
1,034,134	+		GFF1033	0.15	+0.6
1,034,141	+		GFF1033	0.15	-1.6
1,034,142	-		GFF1033	0.15	-0.6
1,034,142	-		GFF1033	0.15	+1.2
1,034,143	+		GFF1033	0.15	-0.9
1,034,149	-		GFF1033	0.15	+0.6
1,034,149	-		GFF1033	0.15	-1.7
1,034,149	-		GFF1033	0.15	-1.2
1,034,149	-		GFF1033	0.15	-0.7
1,034,160	+		GFF1033	0.16	+1.3
1,034,165	+		GFF1033	0.16	-1.1
1,034,168	-		GFF1033	0.16	-0.3
1,034,168	-		GFF1033	0.16	-0.8
1,034,168	-		GFF1033	0.16	-0.4
1,034,168	-		GFF1033	0.16	-0.5
1,034,168	-		GFF1033	0.16	+0.1
1,034,168	-		GFF1033	0.16	+0.9
1,034,168	-		GFF1033	0.16	+0.2
1,034,170	-		GFF1033	0.16	+0.4
1,034,175	-		GFF1033	0.17	+1.1
1,034,205	+		GFF1033	0.18	-1.3
1,034,207	+		GFF1033	0.18	-0.7
1,034,209	-		GFF1033	0.18	-0.7
1,034,210	+		GFF1033	0.18	-0.6
1,034,212	+		GFF1033	0.18	+0.9
1,034,213	-		GFF1033	0.18	+0.1
1,034,237	-		GFF1033	0.20	-1.3
1,034,242	-		GFF1033	0.20	+0.7
1,034,248	-		GFF1033	0.20	+1.3
1,034,263	+		GFF1033	0.21	-0.5
1,034,267	-		GFF1033	0.21	+0.2
1,034,267	-		GFF1033	0.21	-1.0
1,034,270	+		GFF1033	0.21	-1.2
1,034,270	+		GFF1033	0.21	-1.2
1,034,270	+		GFF1033	0.21	+0.4
1,034,277	+		GFF1033	0.21	+1.6
1,034,278	-		GFF1033	0.21	+0.2
1,034,278	-		GFF1033	0.21	-0.3
1,034,285	-		GFF1033	0.22	-0.2
1,034,303	-		GFF1033	0.23	+0.1
1,034,318	+		GFF1033	0.23	-0.8
1,034,318	+		GFF1033	0.23	+0.6
1,034,322	+		GFF1033	0.24	-1.1
1,034,326	-		GFF1033	0.24	-1.0
1,034,326	-		GFF1033	0.24	-1.5
1,034,326	-		GFF1033	0.24	-0.6
1,034,326	-		GFF1033	0.24	+0.4
1,034,326	-		GFF1033	0.24	-0.3
1,034,358	+		GFF1033	0.25	-0.6
1,034,363	+		GFF1033	0.26	+0.6
1,034,389	+		GFF1033	0.27	-0.0
1,034,395	-		GFF1033	0.27	-1.2
1,034,400	+		GFF1033	0.27	-0.8
1,034,408	-		GFF1033	0.28	-0.1
1,034,418	-		GFF1033	0.28	-0.6
1,034,434	+		GFF1033	0.29	-1.4
1,034,436	+		GFF1033	0.29	-0.5
1,034,436	+		GFF1033	0.29	-0.8
1,034,441	+		GFF1033	0.29	-0.8
1,034,441	+		GFF1033	0.29	-2.0
1,034,441	+		GFF1033	0.29	-0.4
1,034,441	+		GFF1033	0.29	-0.4
1,034,441	+		GFF1033	0.29	-0.0
1,034,442	-		GFF1033	0.29	-0.9
1,034,442	-		GFF1033	0.29	+0.3
1,034,442	-		GFF1033	0.29	-0.2
1,034,446	+		GFF1033	0.29	+0.4
1,034,446	+		GFF1033	0.29	-0.1
1,034,446	+		GFF1033	0.29	-1.5
1,034,449	-		GFF1033	0.30	+1.3
1,034,449	-		GFF1033	0.30	-1.1
1,034,454	+		GFF1033	0.30	+0.3
1,034,462	-		GFF1033	0.30	-1.5
1,034,462	-		GFF1033	0.30	+1.2
1,034,462	-		GFF1033	0.30	+0.5
1,034,469	+		GFF1033	0.31	-1.6
1,034,470	-		GFF1033	0.31	-0.3
1,034,472	-		GFF1033	0.31	-1.5
1,034,487	+		GFF1033	0.31	+1.2
1,034,487	+		GFF1033	0.31	-0.7
1,034,493	+		GFF1033	0.32	-0.2
1,034,495	-		GFF1033	0.32	-1.0
1,034,501	-		GFF1033	0.32	-1.1
1,034,503	-		GFF1033	0.32	-0.2
1,034,551	+		GFF1033	0.34	-0.6
1,034,554	-		GFF1033	0.35	-1.0
1,034,559	-		GFF1033	0.35	+0.1
1,034,559	-		GFF1033	0.35	-0.4
1,034,593	+		GFF1033	0.36	-0.0
1,034,599	+		GFF1033	0.37	+0.8
1,034,599	+		GFF1033	0.37	-0.9
1,034,599	+		GFF1033	0.37	-0.6
1,034,599	+		GFF1033	0.37	+0.3
1,034,599	+		GFF1033	0.37	-0.8
1,034,599	+		GFF1033	0.37	-1.3
1,034,599	+		GFF1033	0.37	-0.6
1,034,599	+		GFF1033	0.37	+0.3
1,034,599	+		GFF1033	0.37	-0.4
1,034,599	+		GFF1033	0.37	+0.8
1,034,599	+		GFF1033	0.37	-0.0
1,034,599	+		GFF1033	0.37	+0.4
1,034,599	+		GFF1033	0.37	+0.2
1,034,599	+		GFF1033	0.37	-1.3
1,034,599	+		GFF1033	0.37	+0.7
1,034,599	+		GFF1033	0.37	-0.0
1,034,599	+		GFF1033	0.37	-0.7
1,034,599	+		GFF1033	0.37	-0.6
1,034,599	+		GFF1033	0.37	+0.5
1,034,599	+		GFF1033	0.37	-0.1
1,034,607	-		GFF1033	0.37	-1.5
1,034,607	-		GFF1033	0.37	+0.1
1,034,607	-		GFF1033	0.37	+0.1
1,034,607	-		GFF1033	0.37	-0.5
1,034,607	-		GFF1033	0.37	-0.7
1,034,607	-		GFF1033	0.37	-0.6
1,034,607	-		GFF1033	0.37	-1.3
1,034,607	-		GFF1033	0.37	-2.1
1,034,607	-		GFF1033	0.37	-0.6
1,034,607	-		GFF1033	0.37	-2.3
1,034,607	-		GFF1033	0.37	-0.4
1,034,607	-		GFF1033	0.37	+0.6
1,034,641	-		GFF1033	0.39	-0.6
1,034,647	+		GFF1033	0.39	-1.5
1,034,649	-		GFF1033	0.39	-0.4
1,034,655	-		GFF1033	0.39	-1.4
1,034,656	-		GFF1033	0.39	+0.9
1,034,656	-		GFF1033	0.39	-0.4
1,034,678	+		GFF1033	0.40	+0.8
1,034,681	+		GFF1033	0.41	-0.2
1,034,683	+		GFF1033	0.41	-0.9
1,034,684	-		GFF1033	0.41	+0.2
1,034,686	-		GFF1033	0.41	-0.2
1,034,688	+		GFF1033	0.41	+1.2
1,034,688	+		GFF1033	0.41	-1.1
1,034,688	+		GFF1033	0.41	-1.6
1,034,688	+		GFF1033	0.41	-0.2
1,034,696	-		GFF1033	0.41	-0.6
1,034,699	+		GFF1033	0.41	-1.6
1,034,709	+		GFF1033	0.42	-0.6
1,034,713	-		GFF1033	0.42	-0.9
1,034,741	+		GFF1033	0.43	+1.8
1,034,762	-		GFF1033	0.44	+0.7
1,034,776	+		GFF1033	0.45	+0.2
1,034,776	+		GFF1033	0.45	+1.4
1,034,782	-		GFF1033	0.45	+1.5
1,034,810	+		GFF1033	0.47	-0.7
1,034,818	-		GFF1033	0.47	-0.4
1,034,845	+		GFF1033	0.48	-0.2
1,034,851	-		GFF1033	0.49	+0.7
1,034,851	-		GFF1033	0.49	-0.3
1,034,851	-		GFF1033	0.49	+0.0
1,034,870	-		GFF1033	0.50	-1.2
1,034,885	-		GFF1033	0.50	+0.2
1,034,891	-		GFF1033	0.51	-0.5
1,034,898	-		GFF1033	0.51	-0.7
1,034,901	+		GFF1033	0.51	+0.9
1,034,902	+		GFF1033	0.51	+1.2
1,034,903	-		GFF1033	0.51	+0.9
1,034,918	-		GFF1033	0.52	-0.1
1,034,928	+		GFF1033	0.52	+0.7
1,034,936	-		GFF1033	0.53	-0.4
1,034,949	+		GFF1033	0.53	-1.5
1,034,957	-		GFF1033	0.54	+0.8
1,034,957	-		GFF1033	0.54	-2.7
1,034,968	-		GFF1033	0.54	-0.2
1,034,970	+		GFF1033	0.54	-0.2
1,034,979	-		GFF1033	0.55	-0.2
1,034,986	+		GFF1033	0.55	-0.9
1,034,988	-		GFF1033	0.55	-0.5
1,034,994	-		GFF1033	0.55	-0.2
1,034,994	-		GFF1033	0.55	-1.2
1,034,994	-		GFF1033	0.55	-0.0
1,034,994	-		GFF1033	0.55	+0.4
1,034,996	-		GFF1033	0.56	-1.3
1,034,998	-		GFF1033	0.56	+0.6
1,035,057	+		GFF1033	0.58	-0.4
1,035,067	+		GFF1033	0.59	-1.9
1,035,081	+		GFF1033	0.60	-0.0
1,035,081	+		GFF1033	0.60	+0.5
1,035,089	-		GFF1033	0.60	-0.7
1,035,089	-		GFF1033	0.60	+0.4
1,035,094	-		GFF1033	0.60	-0.5
1,035,104	+		GFF1033	0.61	-0.5
1,035,104	+		GFF1033	0.61	-0.7
1,035,104	+		GFF1033	0.61	-2.0
1,035,107	-		GFF1033	0.61	-1.2
1,035,114	+		GFF1033	0.61	+1.6
1,035,121	-		GFF1033	0.61	-0.2
1,035,123	+		GFF1033	0.62	+0.4
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1,035,797	+				+0.3
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1,035,811	+				+0.8
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1,035,816	+				-0.7
1,035,816	+				-1.1
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1,035,824	-				-0.8
1,035,824	-				+0.6
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1,035,958	-				+0.3
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