Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt parE and OKFHMN_27860 are separated by 1 nucleotides OKFHMN_27860 and OKFHMN_27865 are separated by 20 nucleotides OKFHMN_27865 and ydaS are separated by 97 nucleotides ydaS and OKFHMN_27875 overlap by 4 nucleotides OKFHMN_27875 and OKFHMN_27880 are separated by 22 nucleotides
OKFHMN_27855: parE - plasmid stabilization protein ParE, at 5,361,035 to 5,361,313
parE
OKFHMN_27860: OKFHMN_27860 - stability determinant, at 5,361,315 to 5,361,506
_27860
OKFHMN_27865: OKFHMN_27865 - Cro/Cl family transcriptional regulator, at 5,361,527 to 5,361,898
_27865
OKFHMN_27870: ydaS - Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT, at 5,361,996 to 5,362,298
ydaS
OKFHMN_27875: OKFHMN_27875 - Rha family transcriptional regulator, at 5,362,295 to 5,362,720
_27875
OKFHMN_27880: OKFHMN_27880 - DNA-binding protein, at 5,362,743 to 5,363,705
_27880
Position (kb) 5361
5362
5363 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5361.069 kb on - strand, within parE at 5361.093 kb on - strand, within parE at 5361.108 kb on - strand, within parE at 5361.110 kb on - strand, within parE at 5361.116 kb on - strand, within parE at 5361.167 kb on + strand, within parE at 5361.168 kb on - strand, within parE at 5361.256 kb on - strand, within parE at 5361.256 kb on - strand, within parE at 5361.256 kb on - strand, within parE at 5361.264 kb on - strand, within parE at 5361.273 kb on - strand, within parE at 5361.522 kb on - strand at 5362.109 kb on + strand, within ydaS at 5362.109 kb on + strand, within ydaS at 5362.111 kb on + strand, within ydaS at 5362.112 kb on - strand, within ydaS at 5362.163 kb on + strand, within ydaS at 5362.243 kb on + strand, within ydaS at 5362.718 kb on + strand at 5362.997 kb on + strand, within OKFHMN_27880 at 5363.219 kb on - strand, within OKFHMN_27880 at 5363.237 kb on + strand, within OKFHMN_27880
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 5,361,069 - parE OKFHMN_27855 0.12 -1.1 5,361,093 - parE OKFHMN_27855 0.21 -1.7 5,361,108 - parE OKFHMN_27855 0.26 +0.7 5,361,110 - parE OKFHMN_27855 0.27 -0.4 5,361,116 - parE OKFHMN_27855 0.29 +1.9 5,361,167 + parE OKFHMN_27855 0.47 -1.5 5,361,168 - parE OKFHMN_27855 0.48 -0.7 5,361,256 - parE OKFHMN_27855 0.79 +1.3 5,361,256 - parE OKFHMN_27855 0.79 +0.1 5,361,256 - parE OKFHMN_27855 0.79 +0.3 5,361,264 - parE OKFHMN_27855 0.82 -2.1 5,361,273 - parE OKFHMN_27855 0.85 +0.2 5,361,522 - -0.0 5,362,109 + ydaS OKFHMN_27870 0.37 +0.3 5,362,109 + ydaS OKFHMN_27870 0.37 -0.8 5,362,111 + ydaS OKFHMN_27870 0.38 +0.6 5,362,112 - ydaS OKFHMN_27870 0.38 +0.9 5,362,163 + ydaS OKFHMN_27870 0.55 +1.3 5,362,243 + ydaS OKFHMN_27870 0.82 -0.5 5,362,718 + +0.1 5,362,997 + OKFHMN_27880 0.26 +1.3 5,363,219 - OKFHMN_27880 0.49 +0.6 5,363,237 + OKFHMN_27880 0.51 +0.9
Or see this region's nucleotide sequence