Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27595

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmalX and malI are separated by 174 nucleotidesmalI and hdhA are separated by 111 nucleotides OKFHMN_27590: malX - PTS maltose transporter subunit IICB, at 5,309,844 to 5,311,436 malX OKFHMN_27595: malI - mal regulon transcriptional regulator MalI, at 5,311,611 to 5,312,639 malI OKFHMN_27600: hdhA - 7-alpha-hydroxysteroid dehydrogenase, at 5,312,751 to 5,313,518 hdhA Position (kb) 5311 5312 5313Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5310.801 kb on + strand, within malXat 5310.801 kb on + strand, within malXat 5311.319 kb on + strandat 5311.452 kb on - strandat 5311.519 kb on + strandat 5311.520 kb on - strandat 5311.599 kb on + strandat 5312.637 kb on + strandat 5312.816 kb on + strandat 5312.876 kb on + strand, within hdhAat 5313.002 kb on + strand, within hdhA

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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5,310,801 + malX OKFHMN_27590 0.60 +0.1
5,310,801 + malX OKFHMN_27590 0.60 +0.2
5,311,319 + -0.5
5,311,452 - +2.9
5,311,519 + +1.1
5,311,520 - -2.0
5,311,599 + -0.2
5,312,637 + -0.8
5,312,816 + +0.7
5,312,876 + hdhA OKFHMN_27600 0.16 +0.6
5,313,002 + hdhA OKFHMN_27600 0.33 -0.5

Or see this region's nucleotide sequence