Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhJ and ydhI are separated by 2 nucleotides ydhI and slyA are separated by 200 nucleotides slyA and slyB are separated by 46 nucleotides slyB and anmK are separated by 272 nucleotides
OKFHMN_27465: ydhJ - Uncharacterized protein YdhJ, at 5,288,573 to 5,289,430
ydhJ
OKFHMN_27470: ydhI - Uncharacterized protein YdhI, at 5,289,433 to 5,289,669
ydhI
OKFHMN_27475: slyA - transcriptional regulator SlyA, at 5,289,870 to 5,290,304
slyA
OKFHMN_27480: slyB - outer membrane lipoprotein SlyB, at 5,290,351 to 5,290,818
slyB
OKFHMN_27485: anmK - anhydro-N-acetylmuramic acid kinase, at 5,291,091 to 5,292,200
anmK
Position (kb)
5289
5290
5291 Strain fitness (log2 ratio)
-1
0
1
2
3 at 5289.824 kb on + strand at 5290.456 kb on - strand, within slyB at 5290.762 kb on - strand, within slyB at 5290.787 kb on - strand at 5290.874 kb on + strand at 5290.884 kb on - strand at 5290.900 kb on - strand at 5290.900 kb on - strand at 5290.900 kb on - strand at 5290.915 kb on + strand at 5290.929 kb on - strand at 5290.953 kb on + strand at 5290.990 kb on - strand at 5291.000 kb on + strand at 5291.000 kb on + strand at 5291.001 kb on - strand at 5291.047 kb on + strand at 5291.090 kb on + strand at 5291.233 kb on + strand, within anmK at 5291.234 kb on - strand, within anmK
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 5,289,824 + -1.0 5,290,456 - slyB OKFHMN_27480 0.22 +0.3 5,290,762 - slyB OKFHMN_27480 0.88 +1.1 5,290,787 - -0.3 5,290,874 + +1.2 5,290,884 - +0.3 5,290,900 - +0.2 5,290,900 - +0.2 5,290,900 - +1.6 5,290,915 + +3.1 5,290,929 - -1.5 5,290,953 + +2.9 5,290,990 - +1.0 5,291,000 + -1.0 5,291,000 + +0.3 5,291,001 - +0.3 5,291,047 + -0.2 5,291,090 + +0.1 5,291,233 + anmK OKFHMN_27485 0.13 -0.1 5,291,234 - anmK OKFHMN_27485 0.13 +0.2
Or see this region's nucleotide sequence