Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27185

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiP and ydiO are separated by 42 nucleotidesydiO and ydiF are separated by 13 nucleotides OKFHMN_27180: ydiP - Uncharacterized HTH-type transcriptional regulator YdiP, at 5,231,405 to 5,232,316 ydiP OKFHMN_27185: ydiO - acyl-CoA dehydrogenase, at 5,232,359 to 5,233,510 ydiO OKFHMN_27190: ydiF - Acetate CoA-transferase YdiF, at 5,233,524 to 5,235,119 ydiF Position (kb) 5232 5233 5234Strain fitness (log2 ratio) -1 0 1 2at 5231.592 kb on - strand, within ydiPat 5231.622 kb on + strand, within ydiPat 5232.086 kb on + strand, within ydiPat 5232.361 kb on - strandat 5232.931 kb on + strand, within ydiOat 5233.019 kb on - strand, within ydiOat 5233.399 kb on - strandat 5233.723 kb on + strand, within ydiFat 5234.343 kb on + strand, within ydiFat 5234.375 kb on + strand, within ydiFat 5234.506 kb on + strand, within ydiF

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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5,231,592 - ydiP OKFHMN_27180 0.21 -0.2
5,231,622 + ydiP OKFHMN_27180 0.24 +0.1
5,232,086 + ydiP OKFHMN_27180 0.75 +0.1
5,232,361 - -0.3
5,232,931 + ydiO OKFHMN_27185 0.50 +0.3
5,233,019 - ydiO OKFHMN_27185 0.57 +2.2
5,233,399 - -0.7
5,233,723 + ydiF OKFHMN_27190 0.12 +0.5
5,234,343 + ydiF OKFHMN_27190 0.51 +0.9
5,234,375 + ydiF OKFHMN_27190 0.53 -0.3
5,234,506 + ydiF OKFHMN_27190 0.62 +0.4

Or see this region's nucleotide sequence