Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27000

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkatE and cedA are separated by 182 nucleotidescedA and ydjO are separated by 288 nucleotidesydjO and tcyP are separated by 50 nucleotides OKFHMN_26990: katE - catalase HPII, at 5,194,579 to 5,196,840 katE OKFHMN_26995: cedA - cell division activator CedA, at 5,197,023 to 5,197,286 cedA OKFHMN_27000: ydjO - Uncharacterized protein YdjO, at 5,197,575 to 5,198,330 ydjO OKFHMN_27005: tcyP - cystine/sulfocysteine:cation symporter, at 5,198,381 to 5,199,772 tcyP Position (kb) 5197 5198 5199Strain fitness (log2 ratio) -1 0 1at 5196.594 kb on + strand, within katEat 5196.856 kb on - strandat 5196.904 kb on - strandat 5196.904 kb on - strandat 5196.960 kb on + strandat 5196.979 kb on - strandat 5197.079 kb on + strand, within cedAat 5197.086 kb on + strand, within cedAat 5197.291 kb on + strandat 5198.383 kb on - strandat 5198.886 kb on - strand, within tcyPat 5198.954 kb on - strand, within tcyPat 5199.017 kb on - strand, within tcyPat 5199.042 kb on - strand, within tcyPat 5199.312 kb on + strand, within tcyPat 5199.313 kb on - strand, within tcyPat 5199.313 kb on - strand, within tcyPat 5199.313 kb on - strand, within tcyPat 5199.313 kb on - strand, within tcyPat 5199.317 kb on - strand, within tcyP

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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5,196,594 + katE OKFHMN_26990 0.89 +1.3
5,196,856 - -1.0
5,196,904 - +0.5
5,196,904 - -1.5
5,196,960 + +0.8
5,196,979 - +0.1
5,197,079 + cedA OKFHMN_26995 0.21 +0.9
5,197,086 + cedA OKFHMN_26995 0.24 -0.5
5,197,291 + +0.6
5,198,383 - +0.2
5,198,886 - tcyP OKFHMN_27005 0.36 +0.8
5,198,954 - tcyP OKFHMN_27005 0.41 +0.9
5,199,017 - tcyP OKFHMN_27005 0.46 +0.2
5,199,042 - tcyP OKFHMN_27005 0.47 +0.1
5,199,312 + tcyP OKFHMN_27005 0.67 -0.4
5,199,313 - tcyP OKFHMN_27005 0.67 +1.1
5,199,313 - tcyP OKFHMN_27005 0.67 +0.3
5,199,313 - tcyP OKFHMN_27005 0.67 +0.6
5,199,313 - tcyP OKFHMN_27005 0.67 -1.5
5,199,317 - tcyP OKFHMN_27005 0.67 -0.1

Or see this region's nucleotide sequence