Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26430

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpphA and yebW are separated by 0 nucleotidesyebW and yebV are separated by 20 nucleotidesyebV and rsmF are separated by 117 nucleotides OKFHMN_26425: pphA - protein-serine/threonine phosphatase, at 5,085,619 to 5,086,275 pphA OKFHMN_26430: yebW - Uncharacterized protein YebW, at 5,086,276 to 5,086,551 yebW OKFHMN_26435: yebV - Uncharacterized protein YebV, at 5,086,572 to 5,086,808 yebV OKFHMN_26440: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 5,086,926 to 5,088,446 rsmF Position (kb) 5086 5087Strain fitness (log2 ratio) -1 0 1 2at 5085.302 kb on - strandat 5085.371 kb on - strandat 5085.371 kb on - strandat 5085.376 kb on + strandat 5085.525 kb on - strandat 5085.534 kb on + strandat 5085.587 kb on + strandat 5085.758 kb on + strand, within pphAat 5086.220 kb on - strandat 5086.290 kb on - strandat 5086.695 kb on - strand, within yebVat 5086.698 kb on + strand, within yebV

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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5,085,302 - +0.4
5,085,371 - -1.1
5,085,371 - +0.1
5,085,376 + +0.0
5,085,525 - -0.3
5,085,534 + -0.2
5,085,587 + -0.2
5,085,758 + pphA OKFHMN_26425 0.21 -0.5
5,086,220 - +1.4
5,086,290 - +1.4
5,086,695 - yebV OKFHMN_26435 0.52 +1.1
5,086,698 + yebV OKFHMN_26435 0.53 +2.1

Or see this region's nucleotide sequence