Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt torY and torZ are separated by 24 nucleotides torZ and cmoB are separated by 164 nucleotides
OKFHMN_26205: torY - Cytochrome c-type protein TorY, at 5,050,357 to 5,051,457
torY
OKFHMN_26210: torZ - trimethylamine N-oxide reductase TorZ, at 5,051,482 to 5,053,911
torZ
OKFHMN_26220: cmoB - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 5,054,076 to 5,055,047
cmoB
Position (kb) 5051
5052
5053
5054 Strain fitness (log2 ratio) -2
-1
0
1 at 5050.746 kb on + strand, within torY at 5050.926 kb on + strand, within torY at 5050.938 kb on + strand, within torY at 5050.951 kb on - strand, within torY at 5051.129 kb on + strand, within torY at 5051.129 kb on + strand, within torY at 5051.290 kb on + strand, within torY at 5051.329 kb on + strand, within torY at 5051.330 kb on - strand, within torY at 5051.440 kb on - strand at 5051.440 kb on - strand at 5051.440 kb on - strand at 5051.627 kb on + strand at 5051.809 kb on + strand, within torZ at 5051.813 kb on + strand, within torZ at 5051.837 kb on + strand, within torZ at 5051.964 kb on + strand, within torZ at 5052.406 kb on + strand, within torZ at 5052.406 kb on + strand, within torZ at 5052.418 kb on - strand, within torZ at 5052.559 kb on + strand, within torZ at 5052.952 kb on + strand, within torZ at 5052.969 kb on + strand, within torZ at 5052.986 kb on + strand, within torZ at 5053.039 kb on + strand, within torZ at 5053.058 kb on + strand, within torZ at 5053.524 kb on - strand, within torZ at 5053.712 kb on + strand at 5053.843 kb on + strand at 5053.909 kb on + strand at 5053.975 kb on - strand at 5054.016 kb on - strand at 5054.245 kb on - strand, within cmoB at 5054.759 kb on - strand, within cmoB
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 5,050,746 + torY OKFHMN_26205 0.35 -0.9 5,050,926 + torY OKFHMN_26205 0.52 -0.6 5,050,938 + torY OKFHMN_26205 0.53 +0.5 5,050,951 - torY OKFHMN_26205 0.54 -0.8 5,051,129 + torY OKFHMN_26205 0.70 +0.0 5,051,129 + torY OKFHMN_26205 0.70 -0.3 5,051,290 + torY OKFHMN_26205 0.85 -0.1 5,051,329 + torY OKFHMN_26205 0.88 +0.4 5,051,330 - torY OKFHMN_26205 0.88 -0.9 5,051,440 - +0.4 5,051,440 - +0.5 5,051,440 - -0.6 5,051,627 + +0.4 5,051,809 + torZ OKFHMN_26210 0.13 -1.9 5,051,813 + torZ OKFHMN_26210 0.14 -0.4 5,051,837 + torZ OKFHMN_26210 0.15 +1.4 5,051,964 + torZ OKFHMN_26210 0.20 -1.4 5,052,406 + torZ OKFHMN_26210 0.38 -1.1 5,052,406 + torZ OKFHMN_26210 0.38 -0.1 5,052,418 - torZ OKFHMN_26210 0.39 -0.6 5,052,559 + torZ OKFHMN_26210 0.44 -1.6 5,052,952 + torZ OKFHMN_26210 0.60 -0.3 5,052,969 + torZ OKFHMN_26210 0.61 +0.8 5,052,986 + torZ OKFHMN_26210 0.62 +0.4 5,053,039 + torZ OKFHMN_26210 0.64 +0.4 5,053,058 + torZ OKFHMN_26210 0.65 +0.1 5,053,524 - torZ OKFHMN_26210 0.84 +0.1 5,053,712 + +0.3 5,053,843 + +0.4 5,053,909 + +0.6 5,053,975 - -0.2 5,054,016 - +1.0 5,054,245 - cmoB OKFHMN_26220 0.17 -0.4 5,054,759 - cmoB OKFHMN_26220 0.70 -0.2
Or see this region's nucleotide sequence