Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flhD and flhC are separated by 2 nucleotides flhC and motA are separated by 126 nucleotides motA and motB overlap by 4 nucleotides motB and cheA are separated by 4 nucleotides
OKFHMN_26100: flhD - flagellar transcriptional regulator FlhD, at 5,030,294 to 5,030,644
flhD
OKFHMN_26105: flhC - flagellar transcriptional regulator FlhC, at 5,030,647 to 5,031,225
flhC
OKFHMN_26110: motA - flagellar motor stator protein MotA, at 5,031,352 to 5,032,239
motA
OKFHMN_26115: motB - flagellar motor protein MotB, at 5,032,236 to 5,033,162
motB
OKFHMN_26120: cheA - chemotaxis protein CheA, at 5,033,167 to 5,035,131
cheA
Position (kb) 5031
5032
5033 Strain fitness (log2 ratio) -1
0
1
2 at 5030.778 kb on + strand, within flhC at 5030.950 kb on + strand, within flhC at 5031.146 kb on + strand, within flhC at 5031.156 kb on + strand, within flhC at 5031.212 kb on + strand at 5031.223 kb on + strand at 5031.358 kb on - strand at 5031.363 kb on - strand at 5031.436 kb on + strand at 5031.574 kb on + strand, within motA at 5031.574 kb on + strand, within motA at 5031.575 kb on - strand, within motA at 5031.688 kb on + strand, within motA at 5031.880 kb on - strand, within motA at 5032.092 kb on + strand, within motA at 5032.093 kb on - strand, within motA at 5032.334 kb on + strand, within motB at 5032.334 kb on + strand, within motB at 5032.718 kb on + strand, within motB at 5032.942 kb on + strand, within motB at 5033.089 kb on + strand at 5033.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 5,030,778 + flhC OKFHMN_26105 0.23 -0.4 5,030,950 + flhC OKFHMN_26105 0.52 +2.1 5,031,146 + flhC OKFHMN_26105 0.86 -0.2 5,031,156 + flhC OKFHMN_26105 0.88 -0.2 5,031,212 + -0.2 5,031,223 + -0.6 5,031,358 - +0.5 5,031,363 - +0.6 5,031,436 + +0.4 5,031,574 + motA OKFHMN_26110 0.25 +0.4 5,031,574 + motA OKFHMN_26110 0.25 +0.0 5,031,575 - motA OKFHMN_26110 0.25 -0.3 5,031,688 + motA OKFHMN_26110 0.38 +0.1 5,031,880 - motA OKFHMN_26110 0.59 +0.4 5,032,092 + motA OKFHMN_26110 0.83 +0.4 5,032,093 - motA OKFHMN_26110 0.83 +0.4 5,032,334 + motB OKFHMN_26115 0.11 +0.4 5,032,334 + motB OKFHMN_26115 0.11 +0.2 5,032,718 + motB OKFHMN_26115 0.52 -1.4 5,032,942 + motB OKFHMN_26115 0.76 -1.0 5,033,089 + -0.9 5,033,178 + +0.6
Or see this region's nucleotide sequence