Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tccP and espJ are separated by 324 nucleotides espJ and OKFHMN_25530 are separated by 207 nucleotides OKFHMN_25530 and OKFHMN_25535 are separated by 50 nucleotides
OKFHMN_25520: tccP - Tir-cytoskeleton coupling protein TccP, at 4,940,565 to 4,941,578
tccP
OKFHMN_25525: espJ - type III secretion system effector ADP-ribosyltransferase EspJ, at 4,941,903 to 4,942,556
espJ
OKFHMN_25530: OKFHMN_25530 - hypothetical protein, at 4,942,764 to 4,942,982
_25530
OKFHMN_25535: OKFHMN_25535 - tRNA-Xxx, at 4,943,033 to 4,943,122
_25535
Position (kb) 4941
4942
4943 Strain fitness (log2 ratio) -1
0
1
2 at 4941.291 kb on - strand, within tccP at 4941.369 kb on - strand, within tccP at 4941.498 kb on + strand at 4941.522 kb on + strand at 4941.617 kb on + strand at 4941.622 kb on - strand at 4941.634 kb on + strand at 4941.802 kb on + strand at 4941.919 kb on + strand at 4941.922 kb on - strand at 4942.609 kb on - strand at 4942.721 kb on + strand at 4942.809 kb on + strand, within OKFHMN_25530 at 4942.834 kb on + strand, within OKFHMN_25530 at 4943.031 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 4,941,291 - tccP OKFHMN_25520 0.72 +1.9 4,941,369 - tccP OKFHMN_25520 0.79 -0.8 4,941,498 + +0.1 4,941,522 + +1.4 4,941,617 + +0.2 4,941,622 - +0.3 4,941,634 + -1.5 4,941,802 + -0.5 4,941,919 + +1.7 4,941,922 - -1.0 4,942,609 - -0.2 4,942,721 + +2.0 4,942,809 + OKFHMN_25530 0.21 -0.8 4,942,834 + OKFHMN_25530 0.32 +0.4 4,943,031 + +0.7
Or see this region's nucleotide sequence