Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_24780 and OKFHMN_24785 overlap by 10 nucleotides OKFHMN_24785 and Ile2_trna are separated by 313 nucleotides Ile2_trna and Arg_trna are separated by 1 nucleotides Arg_trna and Arg_trna are separated by 13 nucleotides Arg_trna and stxA2c are separated by 92 nucleotides
OKFHMN_24780: OKFHMN_24780 - Serine/threonine-protein phosphatase, at 4,820,067 to 4,820,738
_24780
OKFHMN_24785: OKFHMN_24785 - antiterminator, at 4,820,729 to 4,821,217
_24785
OKFHMN_24790: Ile2_trna - tRNA-Ile2(cat), at 4,821,531 to 4,821,606
_trna
OKFHMN_24795: Arg_trna - tRNA-Arg(tcg), at 4,821,608 to 4,821,684
_trna
OKFHMN_24800: Arg_trna - tRNA-Arg(tct), at 4,821,698 to 4,821,774
_trna
OKFHMN_24805: stxA2c - Shiga toxin Stx2c subunit A, at 4,821,867 to 4,822,826
stxA2c
Position (kb) 4821
4822 Strain fitness (log2 ratio) -1
0
1
2 at 4820.845 kb on - strand, within OKFHMN_24785 at 4820.851 kb on + strand, within OKFHMN_24785 at 4820.988 kb on - strand, within OKFHMN_24785 at 4821.026 kb on + strand, within OKFHMN_24785 at 4821.030 kb on - strand, within OKFHMN_24785 at 4821.030 kb on - strand, within OKFHMN_24785 at 4821.210 kb on + strand at 4821.215 kb on + strand at 4821.320 kb on - strand at 4821.519 kb on + strand at 4821.865 kb on - strand at 4821.865 kb on - strand at 4821.987 kb on - strand, within stxA2c at 4822.022 kb on + strand, within stxA2c at 4822.224 kb on - strand, within stxA2c at 4822.225 kb on + strand, within stxA2c at 4822.225 kb on + strand, within stxA2c at 4822.273 kb on - strand, within stxA2c at 4822.376 kb on + strand, within stxA2c at 4822.376 kb on + strand, within stxA2c at 4822.377 kb on - strand, within stxA2c at 4822.751 kb on + strand at 4822.770 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 4,820,845 - OKFHMN_24785 0.24 +1.9 4,820,851 + OKFHMN_24785 0.25 -0.1 4,820,988 - OKFHMN_24785 0.53 -1.5 4,821,026 + OKFHMN_24785 0.61 +0.4 4,821,030 - OKFHMN_24785 0.62 +0.9 4,821,030 - OKFHMN_24785 0.62 -0.6 4,821,210 + +0.0 4,821,215 + -1.1 4,821,320 - -1.0 4,821,519 + -0.2 4,821,865 - +2.2 4,821,865 - -0.7 4,821,987 - stxA2c OKFHMN_24805 0.12 -0.1 4,822,022 + stxA2c OKFHMN_24805 0.16 -1.2 4,822,224 - stxA2c OKFHMN_24805 0.37 -0.5 4,822,225 + stxA2c OKFHMN_24805 0.37 -1.5 4,822,225 + stxA2c OKFHMN_24805 0.37 -0.6 4,822,273 - stxA2c OKFHMN_24805 0.42 +0.1 4,822,376 + stxA2c OKFHMN_24805 0.53 -1.2 4,822,376 + stxA2c OKFHMN_24805 0.53 -0.6 4,822,377 - stxA2c OKFHMN_24805 0.53 +0.9 4,822,751 + +0.4 4,822,770 - +0.4
Or see this region's nucleotide sequence