Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfaA and yfaT overlap by 4 nucleotides yfaT and yfaS are separated by 143 nucleotides
OKFHMN_23135: yfaA - DUF2138 domain-containing protein, at 4,511,077 to 4,512,630
yfaA
OKFHMN_23140: yfaT - Uncharacterized protein YfaT, at 4,512,627 to 4,513,250
yfaT
OKFHMN_23145: yfaS - Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family, at 4,513,394 to 4,517,194
yfaS
Position (kb) 4512
4513
4514 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4511.784 kb on - strand, within yfaA at 4511.850 kb on + strand, within yfaA at 4511.887 kb on - strand, within yfaA at 4511.887 kb on - strand, within yfaA at 4512.105 kb on + strand, within yfaA at 4512.386 kb on + strand, within yfaA at 4512.387 kb on - strand, within yfaA at 4512.389 kb on + strand, within yfaA at 4512.415 kb on + strand, within yfaA at 4512.418 kb on - strand, within yfaA at 4512.556 kb on + strand at 4512.557 kb on - strand at 4512.611 kb on + strand at 4512.842 kb on + strand, within yfaT at 4512.877 kb on - strand, within yfaT at 4512.987 kb on + strand, within yfaT at 4513.001 kb on + strand, within yfaT at 4513.093 kb on - strand, within yfaT at 4513.101 kb on + strand, within yfaT at 4513.164 kb on - strand, within yfaT at 4513.225 kb on - strand at 4513.291 kb on + strand at 4513.373 kb on - strand at 4513.565 kb on - strand at 4513.621 kb on + strand at 4513.707 kb on - strand at 4513.707 kb on - strand at 4513.710 kb on + strand at 4513.710 kb on + strand at 4513.710 kb on + strand at 4513.711 kb on - strand at 4513.711 kb on - strand at 4513.784 kb on - strand, within yfaS at 4513.863 kb on - strand, within yfaS at 4513.864 kb on + strand, within yfaS at 4513.967 kb on - strand, within yfaS at 4514.109 kb on + strand, within yfaS at 4514.116 kb on + strand, within yfaS at 4514.116 kb on + strand, within yfaS at 4514.116 kb on + strand, within yfaS at 4514.116 kb on + strand, within yfaS at 4514.117 kb on - strand, within yfaS at 4514.117 kb on - strand, within yfaS at 4514.117 kb on - strand, within yfaS at 4514.118 kb on + strand, within yfaS at 4514.119 kb on - strand, within yfaS at 4514.135 kb on + strand, within yfaS at 4514.135 kb on + strand, within yfaS at 4514.136 kb on - strand, within yfaS at 4514.227 kb on + strand, within yfaS at 4514.241 kb on + strand, within yfaS
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 4,511,784 - yfaA OKFHMN_23135 0.45 +0.2 4,511,850 + yfaA OKFHMN_23135 0.50 +0.4 4,511,887 - yfaA OKFHMN_23135 0.52 -0.2 4,511,887 - yfaA OKFHMN_23135 0.52 -0.8 4,512,105 + yfaA OKFHMN_23135 0.66 -2.6 4,512,386 + yfaA OKFHMN_23135 0.84 +0.3 4,512,387 - yfaA OKFHMN_23135 0.84 +0.0 4,512,389 + yfaA OKFHMN_23135 0.84 +1.3 4,512,415 + yfaA OKFHMN_23135 0.86 +1.0 4,512,418 - yfaA OKFHMN_23135 0.86 -1.2 4,512,556 + +0.6 4,512,557 - -1.0 4,512,611 + -0.3 4,512,842 + yfaT OKFHMN_23140 0.34 -0.2 4,512,877 - yfaT OKFHMN_23140 0.40 +0.2 4,512,987 + yfaT OKFHMN_23140 0.58 +1.5 4,513,001 + yfaT OKFHMN_23140 0.60 -0.6 4,513,093 - yfaT OKFHMN_23140 0.75 +0.5 4,513,101 + yfaT OKFHMN_23140 0.76 +0.8 4,513,164 - yfaT OKFHMN_23140 0.86 -0.2 4,513,225 - -0.4 4,513,291 + +0.1 4,513,373 - +0.6 4,513,565 - +0.2 4,513,621 + +1.3 4,513,707 - -0.3 4,513,707 - +0.6 4,513,710 + +1.3 4,513,710 + +0.9 4,513,710 + -0.6 4,513,711 - -0.6 4,513,711 - +0.6 4,513,784 - yfaS OKFHMN_23145 0.10 +0.1 4,513,863 - yfaS OKFHMN_23145 0.12 +0.6 4,513,864 + yfaS OKFHMN_23145 0.12 +1.1 4,513,967 - yfaS OKFHMN_23145 0.15 +0.1 4,514,109 + yfaS OKFHMN_23145 0.19 +0.0 4,514,116 + yfaS OKFHMN_23145 0.19 +1.6 4,514,116 + yfaS OKFHMN_23145 0.19 -1.1 4,514,116 + yfaS OKFHMN_23145 0.19 +0.7 4,514,116 + yfaS OKFHMN_23145 0.19 +0.5 4,514,117 - yfaS OKFHMN_23145 0.19 +0.1 4,514,117 - yfaS OKFHMN_23145 0.19 -0.8 4,514,117 - yfaS OKFHMN_23145 0.19 +1.3 4,514,118 + yfaS OKFHMN_23145 0.19 -0.7 4,514,119 - yfaS OKFHMN_23145 0.19 +0.2 4,514,135 + yfaS OKFHMN_23145 0.19 +2.5 4,514,135 + yfaS OKFHMN_23145 0.19 +0.2 4,514,136 - yfaS OKFHMN_23145 0.20 +0.9 4,514,227 + yfaS OKFHMN_23145 0.22 -0.1 4,514,241 + yfaS OKFHMN_23145 0.22 -1.8
Or see this region's nucleotide sequence