Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22940

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmenD and menH overlap by 4 nucleotidesmenH and menB are separated by 14 nucleotidesmenB and menC overlap by 1 nucleotides OKFHMN_22935: menD - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylic-acid synthase, at 4,464,897 to 4,466,567 menD OKFHMN_22940: menH - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase, at 4,466,564 to 4,467,322 menH OKFHMN_22945: menB - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 4,467,337 to 4,468,194 menB OKFHMN_22950: menC - o-succinylbenzoate synthase, at 4,468,194 to 4,469,156 menC Position (kb) 4466 4467 4468Strain fitness (log2 ratio) -2 -1 0 1 2at 4466.077 kb on + strand, within menDat 4466.077 kb on + strand, within menDat 4466.257 kb on + strand, within menDat 4466.257 kb on + strand, within menDat 4466.288 kb on - strand, within menDat 4466.554 kb on + strandat 4466.564 kb on - strandat 4466.604 kb on + strandat 4466.693 kb on + strand, within menHat 4466.693 kb on + strand, within menHat 4466.763 kb on + strand, within menHat 4466.764 kb on - strand, within menHat 4466.786 kb on + strand, within menHat 4467.148 kb on + strand, within menHat 4467.364 kb on + strandat 4467.529 kb on + strand, within menBat 4467.927 kb on + strand, within menB

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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4,466,077 + menD OKFHMN_22935 0.71 -0.2
4,466,077 + menD OKFHMN_22935 0.71 -0.4
4,466,257 + menD OKFHMN_22935 0.81 -0.0
4,466,257 + menD OKFHMN_22935 0.81 -0.5
4,466,288 - menD OKFHMN_22935 0.83 +1.2
4,466,554 + -0.4
4,466,564 - -1.4
4,466,604 + -0.8
4,466,693 + menH OKFHMN_22940 0.17 +0.3
4,466,693 + menH OKFHMN_22940 0.17 +2.3
4,466,763 + menH OKFHMN_22940 0.26 -0.5
4,466,764 - menH OKFHMN_22940 0.26 -2.0
4,466,786 + menH OKFHMN_22940 0.29 +0.2
4,467,148 + menH OKFHMN_22940 0.77 -0.2
4,467,364 + -0.2
4,467,529 + menB OKFHMN_22945 0.22 -0.2
4,467,927 + menB OKFHMN_22945 0.69 -1.0

Or see this region's nucleotide sequence