Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eutR and hemF are separated by 5 nucleotides hemF and amiA are separated by 3 nucleotides amiA and ypeA are separated by 213 nucleotides ypeA and yfeZ overlap by 14 nucleotides
OKFHMN_22090: eutR - HTH-type transcriptional regulator EutR, at 4,296,294 to 4,297,346
eutR
OKFHMN_22095: hemF - oxygen-dependent coproporphyrinogen oxidase, at 4,297,352 to 4,298,251
hemF
OKFHMN_22100: amiA - N-acetylmuramoyl-L-alanine amidase AmiA, at 4,298,255 to 4,299,124
amiA
OKFHMN_22105: ypeA - GNAT family acetyltransferase, at 4,299,338 to 4,299,763
ypeA
OKFHMN_22110: yfeZ - Inner membrane protein YfeZ, at 4,299,750 to 4,300,199
yfeZ
Position (kb) 4298
4299
4300 Strain fitness (log2 ratio) -1
0
1 at 4297.354 kb on - strand at 4297.372 kb on + strand at 4297.372 kb on + strand at 4297.386 kb on - strand at 4297.426 kb on - strand at 4297.533 kb on + strand, within hemF at 4297.534 kb on - strand, within hemF at 4297.534 kb on - strand, within hemF at 4297.549 kb on - strand, within hemF at 4297.578 kb on + strand, within hemF at 4297.610 kb on + strand, within hemF at 4297.615 kb on - strand, within hemF at 4297.615 kb on - strand, within hemF at 4297.626 kb on + strand, within hemF at 4297.627 kb on - strand, within hemF at 4297.649 kb on - strand, within hemF at 4297.682 kb on + strand, within hemF at 4297.738 kb on - strand, within hemF at 4297.783 kb on + strand, within hemF at 4297.950 kb on + strand, within hemF at 4297.950 kb on + strand, within hemF at 4297.951 kb on - strand, within hemF at 4298.101 kb on + strand, within hemF at 4298.101 kb on + strand, within hemF at 4298.228 kb on - strand at 4298.530 kb on + strand, within amiA at 4298.714 kb on - strand, within amiA at 4298.837 kb on - strand, within amiA at 4299.009 kb on - strand, within amiA at 4299.138 kb on + strand at 4299.159 kb on + strand at 4299.160 kb on - strand at 4299.160 kb on - strand at 4299.162 kb on - strand at 4299.173 kb on + strand at 4299.210 kb on - strand at 4299.225 kb on - strand at 4299.334 kb on + strand at 4299.351 kb on + strand at 4299.445 kb on + strand, within ypeA at 4299.446 kb on - strand, within ypeA at 4299.548 kb on + strand, within ypeA at 4299.549 kb on - strand, within ypeA at 4299.549 kb on - strand, within ypeA at 4299.549 kb on - strand, within ypeA at 4299.805 kb on + strand, within yfeZ at 4299.890 kb on + strand, within yfeZ at 4299.912 kb on + strand, within yfeZ at 4299.995 kb on + strand, within yfeZ at 4300.023 kb on + strand, within yfeZ at 4300.054 kb on + strand, within yfeZ at 4300.055 kb on - strand, within yfeZ at 4300.120 kb on + strand, within yfeZ
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 4,297,354 - +0.5 4,297,372 + -0.1 4,297,372 + -0.7 4,297,386 - +0.1 4,297,426 - +0.6 4,297,533 + hemF OKFHMN_22095 0.20 -0.2 4,297,534 - hemF OKFHMN_22095 0.20 +0.1 4,297,534 - hemF OKFHMN_22095 0.20 +0.2 4,297,549 - hemF OKFHMN_22095 0.22 +0.3 4,297,578 + hemF OKFHMN_22095 0.25 -0.8 4,297,610 + hemF OKFHMN_22095 0.29 -0.1 4,297,615 - hemF OKFHMN_22095 0.29 -0.8 4,297,615 - hemF OKFHMN_22095 0.29 -0.8 4,297,626 + hemF OKFHMN_22095 0.30 -0.6 4,297,627 - hemF OKFHMN_22095 0.31 -0.2 4,297,649 - hemF OKFHMN_22095 0.33 +0.4 4,297,682 + hemF OKFHMN_22095 0.37 +0.8 4,297,738 - hemF OKFHMN_22095 0.43 -0.2 4,297,783 + hemF OKFHMN_22095 0.48 -1.1 4,297,950 + hemF OKFHMN_22095 0.66 -0.2 4,297,950 + hemF OKFHMN_22095 0.66 -0.6 4,297,951 - hemF OKFHMN_22095 0.67 +0.2 4,298,101 + hemF OKFHMN_22095 0.83 +0.6 4,298,101 + hemF OKFHMN_22095 0.83 -1.1 4,298,228 - -0.1 4,298,530 + amiA OKFHMN_22100 0.32 -0.8 4,298,714 - amiA OKFHMN_22100 0.53 -0.5 4,298,837 - amiA OKFHMN_22100 0.67 -0.6 4,299,009 - amiA OKFHMN_22100 0.87 +0.7 4,299,138 + -0.7 4,299,159 + +0.6 4,299,160 - +0.1 4,299,160 - -0.2 4,299,162 - +0.0 4,299,173 + -0.8 4,299,210 - +0.2 4,299,225 - -0.2 4,299,334 + -0.1 4,299,351 + -0.1 4,299,445 + ypeA OKFHMN_22105 0.25 -0.3 4,299,446 - ypeA OKFHMN_22105 0.25 -0.3 4,299,548 + ypeA OKFHMN_22105 0.49 +0.4 4,299,549 - ypeA OKFHMN_22105 0.50 +0.1 4,299,549 - ypeA OKFHMN_22105 0.50 -1.0 4,299,549 - ypeA OKFHMN_22105 0.50 -1.2 4,299,805 + yfeZ OKFHMN_22110 0.12 +0.1 4,299,890 + yfeZ OKFHMN_22110 0.31 +1.1 4,299,912 + yfeZ OKFHMN_22110 0.36 -0.3 4,299,995 + yfeZ OKFHMN_22110 0.54 +0.7 4,300,023 + yfeZ OKFHMN_22110 0.61 +0.1 4,300,054 + yfeZ OKFHMN_22110 0.68 -0.9 4,300,055 - yfeZ OKFHMN_22110 0.68 +1.4 4,300,120 + yfeZ OKFHMN_22110 0.82 +0.3
Or see this region's nucleotide sequence