Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rluD and yfiH overlap by 4 nucleotides yfiH and clpB are separated by 129 nucleotides clpB and 16S_rrna are separated by 442 nucleotides
OKFHMN_21250: rluD - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 4,118,449 to 4,119,429
rluD
OKFHMN_21255: yfiH - purine nucleoside phosphorylase YfiH, at 4,119,426 to 4,120,157
yfiH
OKFHMN_21265: clpB - ATP-dependent chaperone ClpB, at 4,120,287 to 4,122,860
clpB
OKFHMN_21270: 16S_rrna - 16S ribosomal RNA, at 4,123,303 to 4,124,844
_rrna
Position (kb) 4120
4121
4122
4123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4119.360 kb on + strand at 4119.360 kb on + strand at 4119.361 kb on - strand at 4119.361 kb on - strand at 4119.425 kb on + strand at 4119.480 kb on - strand at 4119.485 kb on + strand at 4119.612 kb on - strand, within yfiH at 4119.634 kb on + strand, within yfiH at 4119.672 kb on + strand, within yfiH at 4119.673 kb on - strand, within yfiH at 4119.673 kb on - strand, within yfiH at 4119.699 kb on + strand, within yfiH at 4119.700 kb on - strand, within yfiH at 4119.702 kb on - strand, within yfiH at 4119.702 kb on - strand, within yfiH at 4119.702 kb on - strand, within yfiH at 4119.857 kb on + strand, within yfiH at 4119.950 kb on - strand, within yfiH at 4119.965 kb on + strand, within yfiH at 4119.989 kb on + strand, within yfiH at 4119.989 kb on + strand, within yfiH at 4119.989 kb on + strand, within yfiH at 4119.990 kb on - strand, within yfiH at 4119.990 kb on - strand, within yfiH at 4119.990 kb on - strand, within yfiH at 4119.993 kb on + strand, within yfiH at 4119.994 kb on - strand, within yfiH at 4120.008 kb on + strand, within yfiH at 4120.009 kb on - strand, within yfiH at 4120.073 kb on + strand, within yfiH at 4120.074 kb on - strand, within yfiH at 4120.074 kb on - strand, within yfiH at 4120.074 kb on - strand, within yfiH at 4120.074 kb on - strand, within yfiH at 4120.074 kb on - strand, within yfiH at 4120.078 kb on - strand, within yfiH at 4120.078 kb on - strand, within yfiH at 4120.078 kb on - strand, within yfiH at 4120.080 kb on - strand, within yfiH at 4120.153 kb on + strand at 4120.153 kb on + strand at 4120.154 kb on - strand at 4120.155 kb on + strand at 4120.156 kb on - strand at 4120.156 kb on - strand at 4120.156 kb on - strand at 4120.204 kb on + strand at 4120.205 kb on - strand at 4120.248 kb on - strand at 4120.287 kb on - strand at 4120.305 kb on - strand at 4120.305 kb on - strand at 4120.308 kb on - strand at 4120.371 kb on - strand at 4120.388 kb on - strand at 4120.432 kb on + strand at 4120.433 kb on - strand at 4120.475 kb on + strand at 4120.514 kb on + strand at 4120.514 kb on + strand at 4120.601 kb on + strand, within clpB at 4120.776 kb on + strand, within clpB at 4120.779 kb on - strand, within clpB at 4120.952 kb on + strand, within clpB at 4120.952 kb on + strand, within clpB at 4121.129 kb on + strand, within clpB at 4121.129 kb on + strand, within clpB at 4121.129 kb on + strand, within clpB at 4121.130 kb on - strand, within clpB at 4121.218 kb on + strand, within clpB at 4121.218 kb on + strand, within clpB at 4121.219 kb on - strand, within clpB at 4121.242 kb on - strand, within clpB at 4121.250 kb on + strand, within clpB at 4121.381 kb on + strand, within clpB at 4121.425 kb on - strand, within clpB at 4121.540 kb on + strand, within clpB at 4121.711 kb on + strand, within clpB at 4121.712 kb on - strand, within clpB at 4121.874 kb on - strand, within clpB at 4121.969 kb on + strand, within clpB at 4121.969 kb on + strand, within clpB at 4122.029 kb on + strand, within clpB at 4122.029 kb on + strand, within clpB at 4122.029 kb on + strand, within clpB at 4122.030 kb on - strand, within clpB at 4122.150 kb on - strand, within clpB at 4122.150 kb on - strand, within clpB at 4122.150 kb on - strand, within clpB at 4122.267 kb on + strand, within clpB at 4122.297 kb on + strand, within clpB at 4122.364 kb on + strand, within clpB at 4122.419 kb on + strand, within clpB at 4122.440 kb on + strand, within clpB at 4122.486 kb on + strand, within clpB at 4122.486 kb on + strand, within clpB at 4122.520 kb on + strand, within clpB at 4122.521 kb on - strand, within clpB at 4122.521 kb on - strand, within clpB at 4122.657 kb on + strand at 4122.720 kb on + strand at 4122.721 kb on - strand at 4122.721 kb on - strand at 4122.721 kb on - strand at 4122.721 kb on - strand at 4122.784 kb on + strand at 4122.784 kb on + strand at 4122.784 kb on + strand at 4122.816 kb on - strand at 4122.816 kb on - strand at 4122.865 kb on - strand at 4122.897 kb on + strand at 4122.898 kb on - strand at 4122.898 kb on - strand at 4122.919 kb on - strand at 4122.919 kb on - strand at 4122.963 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 4,119,360 + +2.0 4,119,360 + +0.6 4,119,361 - +1.1 4,119,361 - +0.4 4,119,425 + +1.0 4,119,480 - +0.5 4,119,485 + +0.8 4,119,612 - yfiH OKFHMN_21255 0.25 -0.1 4,119,634 + yfiH OKFHMN_21255 0.28 +0.4 4,119,672 + yfiH OKFHMN_21255 0.34 +0.2 4,119,673 - yfiH OKFHMN_21255 0.34 +0.7 4,119,673 - yfiH OKFHMN_21255 0.34 -0.4 4,119,699 + yfiH OKFHMN_21255 0.37 +0.8 4,119,700 - yfiH OKFHMN_21255 0.37 +0.8 4,119,702 - yfiH OKFHMN_21255 0.38 +0.4 4,119,702 - yfiH OKFHMN_21255 0.38 +1.0 4,119,702 - yfiH OKFHMN_21255 0.38 -0.3 4,119,857 + yfiH OKFHMN_21255 0.59 +0.4 4,119,950 - yfiH OKFHMN_21255 0.72 +0.6 4,119,965 + yfiH OKFHMN_21255 0.74 +0.8 4,119,989 + yfiH OKFHMN_21255 0.77 +0.6 4,119,989 + yfiH OKFHMN_21255 0.77 +0.5 4,119,989 + yfiH OKFHMN_21255 0.77 +0.8 4,119,990 - yfiH OKFHMN_21255 0.77 +0.3 4,119,990 - yfiH OKFHMN_21255 0.77 +1.1 4,119,990 - yfiH OKFHMN_21255 0.77 +0.0 4,119,993 + yfiH OKFHMN_21255 0.77 +0.4 4,119,994 - yfiH OKFHMN_21255 0.78 +0.5 4,120,008 + yfiH OKFHMN_21255 0.80 +0.8 4,120,009 - yfiH OKFHMN_21255 0.80 +0.3 4,120,073 + yfiH OKFHMN_21255 0.88 -0.7 4,120,074 - yfiH OKFHMN_21255 0.89 +0.4 4,120,074 - yfiH OKFHMN_21255 0.89 +1.4 4,120,074 - yfiH OKFHMN_21255 0.89 +0.3 4,120,074 - yfiH OKFHMN_21255 0.89 +0.4 4,120,074 - yfiH OKFHMN_21255 0.89 +0.4 4,120,078 - yfiH OKFHMN_21255 0.89 -0.5 4,120,078 - yfiH OKFHMN_21255 0.89 +0.5 4,120,078 - yfiH OKFHMN_21255 0.89 +0.4 4,120,080 - yfiH OKFHMN_21255 0.89 +1.0 4,120,153 + +0.4 4,120,153 + +0.5 4,120,154 - +1.3 4,120,155 + -0.2 4,120,156 - +0.1 4,120,156 - +0.7 4,120,156 - +1.1 4,120,204 + +0.2 4,120,205 - -0.5 4,120,248 - -0.7 4,120,287 - +2.4 4,120,305 - +0.5 4,120,305 - -0.7 4,120,308 - -0.1 4,120,371 - +0.5 4,120,388 - -0.5 4,120,432 + +0.1 4,120,433 - +0.3 4,120,475 + +0.1 4,120,514 + +0.4 4,120,514 + -0.2 4,120,601 + clpB OKFHMN_21265 0.12 -0.3 4,120,776 + clpB OKFHMN_21265 0.19 -0.3 4,120,779 - clpB OKFHMN_21265 0.19 -1.5 4,120,952 + clpB OKFHMN_21265 0.26 -0.3 4,120,952 + clpB OKFHMN_21265 0.26 +0.4 4,121,129 + clpB OKFHMN_21265 0.33 -0.3 4,121,129 + clpB OKFHMN_21265 0.33 +0.4 4,121,129 + clpB OKFHMN_21265 0.33 -0.9 4,121,130 - clpB OKFHMN_21265 0.33 -0.4 4,121,218 + clpB OKFHMN_21265 0.36 -0.3 4,121,218 + clpB OKFHMN_21265 0.36 +0.6 4,121,219 - clpB OKFHMN_21265 0.36 -1.2 4,121,242 - clpB OKFHMN_21265 0.37 +0.6 4,121,250 + clpB OKFHMN_21265 0.37 +0.5 4,121,381 + clpB OKFHMN_21265 0.43 +0.1 4,121,425 - clpB OKFHMN_21265 0.44 +0.5 4,121,540 + clpB OKFHMN_21265 0.49 -0.6 4,121,711 + clpB OKFHMN_21265 0.55 +0.4 4,121,712 - clpB OKFHMN_21265 0.55 -0.0 4,121,874 - clpB OKFHMN_21265 0.62 +1.4 4,121,969 + clpB OKFHMN_21265 0.65 -0.6 4,121,969 + clpB OKFHMN_21265 0.65 +2.4 4,122,029 + clpB OKFHMN_21265 0.68 -1.4 4,122,029 + clpB OKFHMN_21265 0.68 +0.6 4,122,029 + clpB OKFHMN_21265 0.68 -0.7 4,122,030 - clpB OKFHMN_21265 0.68 -3.2 4,122,150 - clpB OKFHMN_21265 0.72 +0.9 4,122,150 - clpB OKFHMN_21265 0.72 +0.2 4,122,150 - clpB OKFHMN_21265 0.72 +1.3 4,122,267 + clpB OKFHMN_21265 0.77 -1.2 4,122,297 + clpB OKFHMN_21265 0.78 +3.0 4,122,364 + clpB OKFHMN_21265 0.81 -0.2 4,122,419 + clpB OKFHMN_21265 0.83 +0.1 4,122,440 + clpB OKFHMN_21265 0.84 -0.9 4,122,486 + clpB OKFHMN_21265 0.85 +2.2 4,122,486 + clpB OKFHMN_21265 0.85 +0.1 4,122,520 + clpB OKFHMN_21265 0.87 +1.0 4,122,521 - clpB OKFHMN_21265 0.87 -0.5 4,122,521 - clpB OKFHMN_21265 0.87 +1.4 4,122,657 + +1.2 4,122,720 + +1.1 4,122,721 - +0.8 4,122,721 - -0.8 4,122,721 - -0.4 4,122,721 - +0.6 4,122,784 + +0.1 4,122,784 + -0.1 4,122,784 + -1.5 4,122,816 - +0.3 4,122,816 - +1.2 4,122,865 - -0.0 4,122,897 + +0.4 4,122,898 - +0.3 4,122,898 - -0.2 4,122,919 - +0.7 4,122,919 - +1.4 4,122,963 + +0.0
Or see this region's nucleotide sequence